Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  171  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52643373--52643467
24
4.0
24
85
10
124
26
24
21
28
1.99
52643373--52643466
47
2.0
49
85
12
133
26
24
21
27
1.99
52643518--52643577
20
3.0
20
85
0
93
31
18
11
38
1.87
52643620--52643667
25
1.9
25
86
0
69
25
16
25
33
1.96
52650124--52650208
30
2.8
30
76
0
107
27
17
27
28
1.98
52651060--52651315
132
1.9
132
98
0
494
35
20
12
31
1.90
52652779--52652807
15
1.9
15
100
0
58
55
13
6
24
1.63
52652959--52653055
30
3.2
30
71
8
90
27
15
28
27
1.96
52654843--52654870
13
2.2
13
100
0
56
50
14
7
28
1.69
52656109--52656242
64
2.1
64
98
1
261
20
17
20
40
1.92
52657542--52657596
20
2.7
19
78
10
56
30
18
29
21
1.97
52659184--52659222
18
2.1
19
85
4
53
7
23
2
66
1.30
52659186--52659289
48
2.2
49
79
8
115
12
27
0
58
1.40
52659240--52659289
18
2.8
18
87
0
73
14
28
0
58
1.37
52659215--52659296
24
3.4
24
77
0
101
12
26
0
60
1.31
52663510--52663563
20
2.7
19
75
11
54
27
20
31
20
1.97
52664195--52664242
15
3.3
15
73
5
53
31
0
25
43
1.55
52669728--52669783
27
2.1
26
90
9
87
39
17
8
33
1.81
52675858--52675954
30
3.2
30
68
13
74
27
16
28
26
1.97
52677799--52677842
19
2.4
18
81
7
52
68
2
4
25
1.20
52678557--52678618
32
1.9
32
96
0
115
29
9
22
38
1.86
52684856--52684889
12
2.8
12
81
0
50
17
38
0
44
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52684818--52684897
38
2.2
36
82
8
90
13
30
0
56
1.38
52687000--52687039
11
3.6
11
82
0
53
17
5
5
72
1.21
52686998--52687039
12
3.7
12
78
12
52
19
4
4
71
1.22
52687573--52687620
14
3.4
14
79
0
51
41
6
31
20
1.77
52693905--52693952
14
3.4
14
82
0
51
43
4
31
20
1.71
52704428--52704452
12
2.1
12
100
0
50
76
0
16
8
1.02
52704422--52704477
18
3.1
18
76
5
51
69
3
19
7
1.27
52704428--52704509
30
2.7
31
81
5
105
64
1
21
12
1.33
52706219--52706316
30
3.3
30
75
0
97
29
16
26
27
1.97
52708597--52708641
12
3.8
12
81
0
54
8
24
0
66
1.20
52708592--52708641
24
2.1
24
84
0
64
14
24
0
62
1.32
52708715--52708771
5
11.0
5
75
20
55
3
17
1
77
1.00
52708715--52708771
16
3.7
14
82
15
60
3
17
1
77
1.00
52708715--52708776
21
3.0
21
75
15
58
3
16
3
77
1.03
52709644--52709695
11
4.4
12
88
9
72
15
7
7
69
1.35
52709644--52709695
12
4.3
12
83
9
61
15
7
7
69
1.35
52710132--52710226
30
3.2
29
72
3
82
27
26
16
29
1.97
52713781--52713836
27
2.1
26
90
9
87
33
8
17
39
1.81
52719335--52719382
15
3.3
15
73
5
53
43
25
0
31
1.55
52721274--52721312
11
3.6
11
93
6
71
15
5
7
71
1.26
52721262--52721312
13
4.3
13
80
19
51
15
5
7
70
1.30
52721275--52721311
10
3.6
10
85
7
56
16
5
8
70
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52721274--52721314
21
2.0
21
100
0
82
17
4
9
68
1.35
52725613--52725709
30
3.2
30
71
8
90
27
15
28
27
1.96
52734743--52734790
14
3.4
14
85
0
60
43
6
31
18
1.75
52736392--52736481
24
3.7
25
89
5
141
36
31
12
20
1.89
52736347--52736478
48
2.7
49
83
2
151
36
28
12
23
1.90
52736345--52736481
72
1.9
72
86
3
195
35
29
11
22
1.90
52737656--52737689
17
2.0
17
94
0
59
38
5
0
55
1.24
52740220--52740271
27
2.0
26
84
3
68
17
26
21
34
1.95
52745403--52745427
10
2.5
10
100
0
50
40
32
8
20
1.81
52748329--52748449
39
3.1
39
80
3
136
28
23
25
22
1.99
52748296--52748479
79
2.3
79
76
12
189
26
23
27
22
2.00
52751163--52751331
45
3.7
45
78
14
202
21
20
28
28
1.98
52751158--52751326
92
1.8
92
96
0
311
21
20
29
28
1.98
52762930--52763027
30
3.3
30
71
4
81
27
24
16
31
1.96
52766204--52766267
18
3.7
18
72
16
55
6
29
1
62
1.29
52766822--52766859
17
2.2
17
86
9
51
81
2
7
7
0.96
52768338--52768413
30
2.5
30
70
8
73
27
27
17
27
1.97
52774468--52774564
30
3.2
30
71
8
90
27
15
28
27
1.96
52775986--52776045
29
2.1
29
90
0
93
41
28
0
30
1.56
52775992--52776039
15
3.3
15
73
5
53
43
25
0
31
1.55
52776274--52776307
12
2.7
13
86
4
52
76
8
0
14
1.01
52776260--52776317
14
4.3
14
78
6
50
79
6
1
12
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52777347--52777402
30
1.9
28
85
7
76
53
3
30
12
1.55
52780601--52780648
15
3.3
15
73
5
53
43
25
0
31
1.55
52782883--52782972
42
2.2
41
84
9
112
12
23
1
63
1.35
52782923--52782950
12
2.3
12
100
0
56
14
28
0
57
1.38
52782916--52782967
12
4.4
12
80
4
52
11
23
1
63
1.37
52782975--52783005
12
2.6
12
94
0
53
25
16
9
48
1.76
52783053--52783121
5
13.0
5
80
17
61
2
17
4
75
1.09
52783082--52783121
12
3.5
11
84
15
55
0
17
7
75
1.03
52785719--52785815
30
3.2
30
74
8
99
28
15
27
27
1.96
52788265--52788448
101
1.8
99
88
2
278
28
27
19
25
1.98
52791798--52791853
27
2.1
26
87
9
78
33
10
17
37
1.85
52796238--52796314
24
3.0
25
70
16
68
72
1
18
7
1.15
52800923--52800979
2
28.5
2
96
0
105
50
0
0
49
1.00
52803829--52803925
30
3.2
30
73
2
97
27
27
15
28
1.96
52806585--52806687
30
3.5
30
73
6
102
27
23
16
33
1.96
52808377--52808507
48
2.7
48
84
2
165
22
29
22
25
1.99
52813912--52813945
15
2.3
15
90
10
52
5
11
0
82
0.83
52816040--52816065
13
2.0
13
100
0
52
23
7
0
69
1.14
52819017--52819076
29
2.0
29
84
12
77
35
16
1
46
1.57
52821818--52821858
23
1.9
20
85
14
55
48
14
0
36
1.44
52824205--52824238
17
2.0
17
94
0
59
55
0
5
38
1.24
52825731--52825778
14
3.4
14
85
0
60
43
6
31
18
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52826999--52827095
30
3.2
30
76
5
99
29
15
25
28
1.96
52829295--52829364
30
2.3
29
83
9
79
15
21
0
62
1.32
52829368--52829395
12
2.3
12
100
0
56
21
14
14
50
1.78
52829448--52829493
11
4.3
11
81
10
51
2
13
2
82
0.85
52829446--52829504
16
3.8
16
75
18
52
1
13
5
79
0.97
52830328--52830375
14
3.4
14
85
0
60
43
6
31
18
1.75
52831796--52831856
24
2.5
24
83
0
68
21
16
32
29
1.95
52839158--52839197
21
2.0
20
85
14
55
35
12
22
30
1.91
52849727--52849934
40
5.2
39
84
1
209
25
25
22
26
2.00
52849727--52849932
80
2.6
81
84
3
247
24
26
22
26
2.00
52861151--52861235
30
2.8
29
83
13
109
14
22
0
63
1.30
52861186--52861241
18
3.1
18
79
5
60
8
19
1
69
1.24
52861211--52861235
12
2.1
12
100
0
50
8
16
0
76
1.02
52861306--52861351
15
2.9
16
80
6
58
6
17
0
76
1.00
52867887--52867971
18
4.6
17
69
15
62
70
2
20
7
1.22
52870219--52870391
46
3.8
45
77
10
179
22
19
27
30
1.98
52870216--52870386
93
1.8
93
89
0
270
22
19
28
29
1.98
52875166--52875259
6
15.3
6
72
16
77
48
14
17
19
1.81
52875180--52875259
31
2.6
31
89
0
115
48
15
17
18
1.81
52875399--52875460
31
2.0
31
83
3
79
35
20
24
19
1.96
52875765--52876093
27
12.1
27
88
1
426
39
7
21
30
1.82
52875990--52876239
27
9.3
27
77
9
134
32
8
21
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52876088--52876239
54
2.8
54
77
10
159
28
9
23
38
1.86
52875774--52876239
27
17.2
28
81
8
118
36
8
21
33
1.85
52878676--52878850
46
3.8
45
76
7
172
28
29
20
21
1.98
52878683--52878855
93
1.9
93
91
0
283
27
29
20
21
1.98
52884142--52884315
46
3.8
44
79
9
188
28
29
21
20
1.98
52884149--52884320
92
1.9
93
93
1
301
27
30
21
20
1.98
52888358--52888508
40
3.8
40
77
13
134
27
23
26
22
2.00
52888394--52888524
40
3.3
40
79
2
156
25
23
27
23
2.00
52898663--52898868
39
5.3
39
91
0
324
31
28
21
18
1.97
52902792--52902835
22
2.0
22
100
0
88
13
0
18
68
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325