genome.fa.s4.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  108  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32045280--32045521	24	10.1	24	95	0	405	20	18	25	35	1.95
32053279--32053490	93	2.2	95	92	4	347	20	17	25	36	1.94
32053279--32053496	24	9.1	24	93	3	343	20	17	25	36	1.94
32060249--32060318	27	2.5	28	95	2	124	30	27	14	28	1.95
32062277--32062334	25	2.3	25	96	0	107	15	24	6	53	1.66
32077671--32077695	13	1.9	13	100	0	50	48	8	20	24	1.76
32079415--32079512	42	2.3	42	89	0	142	20	15	25	38	1.92
32079445--32079589	42	3.5	41	83	3	164	18	15	23	42	1.88
32080394--32080697	145	2.1	141	84	6	407	40	4	10	44	1.60
32080413--32080723	143	2.2	145	83	6	393	41	5	9	43	1.61
32081533--32081599	27	2.5	26	90	7	107	35	11	11	40	1.79
32081993--32082030	3	12.7	3	100	0	76	68	0	0	31	0.90
32085925--32086081	27	5.8	27	84	0	179	28	23	8	38	1.85
32085898--32086027	54	2.4	54	81	0	143	30	24	10	35	1.88
32085931--32086080	81	1.9	81	85	0	210	29	21	9	40	1.84
32086074--32086201	27	4.7	27	89	3	179	42	21	7	28	1.79
32086071--32086289	27	8.0	27	80	6	127	41	19	8	30	1.82
32086330--32086407	27	2.9	27	77	11	88	37	21	19	21	1.95
32087566--32087612	24	2.0	24	91	0	76	34	25	14	25	1.94
32087651--32087707	9	5.9	9	73	15	51	35	8	21	35	1.84
32087649--32087719	20	3.5	20	94	0	124	35	11	21	32	1.89
32087660--32087714	11	5.4	11	70	16	55	36	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32087766--32087929	23	7.0	24	90	6	248	27	20	22	29	1.99
32087766--32087929	47	3.5	47	91	5	253	27	20	22	29	1.99
32087767--32087908	70	2.0	69	93	4	241	27	20	21	30	1.98
32091033--32091099	25	2.6	25	80	4	71	47	2	0	49	1.16
32094699--32094870	93	1.8	93	96	0	317	27	29	21	20	1.98
32094691--32094866	46	3.8	46	80	12	225	28	28	21	21	1.98
32097244--32097332	30	3.0	30	80	8	101	57	15	16	10	1.65
32097244--32097323	15	5.4	15	80	7	92	58	13	17	10	1.62
32097255--32097332	15	5.2	15	78	9	79	56	15	16	11	1.67
32100281--32100452	93	1.8	93	96	0	317	27	29	21	20	1.98
32100273--32100448	46	3.8	46	80	12	225	28	28	21	21	1.98
32104868--32105181	27	11.8	27	89	2	420	33	16	14	35	1.89
32105175--32105288	27	4.2	27	81	2	122	42	18	19	20	1.90
32105324--32105373	23	2.2	23	86	13	68	24	14	20	42	1.88
32116147--32116200	12	4.7	11	86	11	56	48	0	3	48	1.19
32116272--32116324	25	2.1	26	89	3	81	49	7	0	43	1.31
32116393--32116491	49	2.0	51	90	4	157	33	28	6	32	1.82
32116473--32116527	16	3.4	16	84	0	65	29	27	9	34	1.87
32117047--32117096	18	2.7	18	84	3	64	20	28	10	42	1.84
32120552--32120858	43	7.1	43	91	1	490	11	25	32	30	1.91
32126012--32126075	31	2.1	31	93	0	110	23	23	15	37	1.93
32126297--32126366	26	2.8	26	89	4	99	28	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32126478--32126524	24	2.0	24	86	0	67	27	14	23	34	1.94
32131904--32131995	27	3.4	26	86	3	112	27	18	9	44	1.81
32132027--32132428	54	7.4	54	85	4	463	38	21	10	29	1.87
32132027--32132438	27	15.2	27	79	6	336	38	20	10	30	1.87
32132468--32132627	54	3.0	54	90	0	248	36	18	18	25	1.94
32132467--32132627	27	6.0	27	87	0	196	36	18	19	25	1.94
32132833--32132902	25	2.8	25	93	0	113	27	25	21	25	1.99
32132832--32132915	25	3.4	24	83	8	98	29	22	21	26	1.99
32132833--32132927	50	1.9	50	80	8	113	28	24	22	25	1.99
32135450--32135626	40	4.4	40	85	4	234	25	27	22	23	2.00
32144285--32144347	24	2.6	24	100	0	126	20	17	26	34	1.95
32152118--32152204	24	3.6	24	96	0	165	21	17	25	35	1.95
32152118--32152226	48	2.3	48	91	3	175	24	17	23	33	1.96
32152118--32152226	24	4.5	24	90	2	157	24	17	23	33	1.96
32157337--32157507	86	2.0	87	81	5	204	29	25	18	26	1.98
32157346--32157504	42	3.7	43	74	12	130	28	25	18	27	1.98
32160864--32161067	75	2.7	76	85	4	261	43	9	3	43	1.55
32163652--32163696	23	2.0	23	86	8	65	15	4	20	60	1.52
32166494--32166534	21	1.9	22	85	5	57	39	0	21	39	1.54
32172441--32172629	48	3.9	48	88	1	290	17	17	30	33	1.94
32175512--32175555	13	3.5	13	75	12	56	56	6	2	34	1.38
32177531--32177582	24	2.2	24	85	0	68	51	7	5	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32179408--32179570	83	2.0	83	97	0	308	31	16	13	38	1.87
32184104--32184173	27	2.5	28	93	2	115	27	14	28	30	1.95
32191164--32191199	13	2.8	13	84	16	56	22	5	2	69	1.22
32191164--32191203	14	3.0	14	82	10	57	22	5	2	70	1.19
32198607--32198661	23	2.4	22	76	8	56	45	0	18	36	1.49
32198704--32198789	30	2.9	31	79	6	97	38	9	24	27	1.86
32199987--32200029	21	2.0	21	100	0	86	30	9	27	32	1.88
32200004--32200089	43	2.0	43	100	0	172	30	11	25	32	1.91
32201555--32201740	48	3.9	47	87	4	248	24	17	29	28	1.97
32201558--32201779	48	4.6	47	85	3	230	25	16	29	28	1.97
32214603--32214745	70	2.0	70	89	0	214	20	24	25	29	1.99
32218594--32218757	71	2.3	71	98	0	319	18	28	17	34	1.94
32218594--32218791	71	2.8	70	91	3	267	20	28	17	33	1.95
32223131--32223328	71	2.8	70	92	3	294	33	17	28	20	1.95
32223197--32223314	41	3.1	41	60	28	98	32	17	28	21	1.96
32223165--32223328	71	2.3	71	100	0	328	35	17	28	18	1.94
32230697--32230894	71	2.8	70	92	3	294	33	17	28	20	1.95
32230763--32230880	41	3.1	41	60	28	98	32	17	28	21	1.96
32230731--32230894	71	2.3	71	100	0	328	35	17	28	18	1.94
32239466--32239637	93	1.8	93	93	0	299	27	30	21	20	1.98
32239458--32239633	46	3.8	46	79	10	214	28	30	21	20	1.98
32243190--32243408	45	5.0	45	85	5	261	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32262760--32262826	34	2.0	34	96	0	125	31	25	13	29	1.94
32269122--32269149	2	14.0	2	100	0	56	50	0	0	50	1.00
32272816--32273000	40	4.7	39	80	10	189	24	22	28	24	2.00
32272869--32273033	79	2.1	79	80	8	176	26	21	27	24	1.99
32280932--32281109	80	2.2	80	82	7	204	25	21	26	25	1.99
32280933--32281077	40	3.6	40	83	9	188	24	22	27	26	1.99
32283730--32283905	40	4.4	40	83	6	225	26	27	22	23	1.99
32292856--32293033	40	4.5	40	88	6	229	23	22	28	25	1.99
32294939--32295115	40	4.4	40	85	4	234	25	27	22	23	2.00
32303640--32303846	53	3.8	54	74	1	191	20	22	17	39	1.93
32305236--32305294	31	1.9	31	86	3	84	47	3	20	28	1.66
32306329--32306392	31	2.1	31	87	0	92	25	25	14	35	1.93
32306584--32306726	24	6.0	24	91	4	209	26	22	22	28	1.99
32306584--32306725	47	3.0	48	90	5	207	26	22	22	28	1.99
32306583--32306726	71	2.0	72	89	4	220	26	22	22	29	1.99
32306776--32306836	20	3.0	20	92	0	104	32	21	11	34	1.89
32308168--32308565	80	4.9	80	87	3	521	39	8	23	28	1.84
32308168--32308565	27	14.8	27	87	2	514	39	8	23	28	1.84
32308516--32308739	27	8.3	27	81	3	193	32	8	20	37	1.84
32308479--32308638	54	3.0	54	80	3	142	35	11	21	31	1.89
32308642--32308757	53	2.2	54	89	6	175	31	6	19	41	1.78
32308643--32308756	27	4.3	26	82	3	129	31	7	19	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32318058--32318109	19	3.0	19	65	26	51	36	21	30	11	1.89
32320712--32320844	49	2.7	49	82	6	153	30	21	24	22	1.99
32328213--32328388	40	4.4	40	94	2	284	24	28	23	23	1.99
32336110--32336243	40	3.4	40	88	5	175	23	27	24	23	2.00
32337554--32337601	9	5.0	9	76	14	51	14	12	0	72	1.11
32339716--32339839	48	2.7	46	79	5	133	29	16	29	23	1.97
32339902--32340029	49	2.6	49	86	3	168	28	22	27	21	1.99
32343290--32343496	46	4.5	45	77	12	149	27	20	28	23	1.99
32352395--32352527	51	2.7	50	82	4	171	24	19	27	27	1.99
32352395--32352538	49	2.9	48	81	4	180	25	20	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325