Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  317  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96041385--96041424
15
2.5
16
84
8
55
35
2
0
62
1.09
96050938--96050980
21
2.0
21
82
8
52
2
20
16
60
1.46
96061097--96061130
18
1.9
18
88
5
52
64
11
11
11
1.50
96063244--96063286
21
2.2
20
80
20
54
41
2
0
55
1.12
96063246--96063286
19
2.1
20
86
13
59
41
2
0
56
1.13
96063251--96063311
26
2.2
29
88
8
92
34
1
1
62
1.15
96063251--96063325
26
2.7
28
83
10
91
36
1
2
60
1.20
96066580--96066630
3
17.0
3
100
0
102
33
0
0
66
0.92
96073780--96073814
18
1.9
18
100
0
70
28
5
20
45
1.73
96073800--96073892
26
3.6
26
91
0
132
35
4
18
41
1.70
96076663--96076718
18
3.1
18
87
12
80
44
0
0
55
0.99
96076654--96076731
19
4.1
20
77
15
94
46
0
0
53
1.00
96082608--96082636
10
2.9
10
100
0
58
41
37
10
10
1.73
96084755--96084813
19
3.3
19
79
18
81
66
15
3
15
1.39
96085760--96085803
5
8.4
5
97
2
70
22
0
0
77
0.77
96085762--96085805
13
3.3
15
76
23
53
25
0
0
75
0.81
96086101--96086174
28
2.8
27
78
11
73
33
6
2
56
1.40
96091571--96091622
23
2.3
23
89
0
77
34
17
17
30
1.93
96091649--96091703
24
2.3
24
84
3
67
32
20
23
23
1.98
96096674--96096716
2
21.5
2
100
0
86
51
0
0
48
1.00
96097465--96097526
30
2.1
30
100
0
124
11
19
12
56
1.66
96106168--96106233
21
3.2
20
76
17
64
33
4
3
59
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96106505--96106578
15
4.7
15
68
12
58
18
1
4
75
1.03
96118424--96118456
16
2.1
16
100
0
66
30
18
6
45
1.73
96124059--96124087
15
2.0
15
93
6
51
82
13
0
3
0.79
96127802--96127846
18
2.5
18
85
7
65
40
0
42
17
1.50
96140719--96140755
2
18.5
2
100
0
74
51
0
48
0
1.00
96153899--96154010
9
12.3
9
71
9
66
53
2
10
33
1.50
96153902--96153969
35
1.9
36
84
3
93
54
1
10
33
1.43
96154286--96154330
3
15.0
3
100
0
90
66
0
0
33
0.92
96154428--96154497
30
2.4
28
76
19
72
61
1
4
32
1.24
96155414--96155715
68
4.4
68
89
0
437
27
23
23
25
2.00
96155836--96156506
44
15.4
43
68
7
236
19
22
21
36
1.95
96155833--96156514
87
7.8
86
88
3
881
19
22
21
36
1.95
96156505--96157188
44
15.5
44
72
9
430
27
22
17
32
1.96
96156507--96157174
132
5.1
132
90
0
1039
27
22
17
32
1.96
96157178--96157409
88
2.6
88
94
0
394
26
28
18
26
1.98
96157209--96157346
41
3.2
41
64
22
102
30
26
18
24
1.98
96157250--96157393
47
3.2
47
65
22
126
27
29
18
25
1.98
96159278--96159343
9
7.0
9
74
16
53
6
6
6
81
0.97
96161019--96161067
23
2.1
23
100
0
98
20
26
16
36
1.93
96165289--96165340
24
2.3
22
80
12
61
55
3
1
38
1.29
96167255--96167287
17
2.1
16
88
11
50
30
0
0
69
0.88
96167334--96167392
21
2.8
22
85
7
70
23
0
6
69
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96167363--96167411
26
2.0
24
88
8
71
32
0
4
63
1.13
96167366--96167423
25
2.3
26
82
5
75
29
0
3
67
1.07
96169992--96170103
60
1.9
58
89
7
172
36
16
7
40
1.76
96169906--96170211
154
2.0
154
93
2
526
36
17
6
40
1.75
96170283--96170330
22
2.1
22
84
3
60
45
16
2
35
1.59
96170597--96170637
22
1.9
22
95
5
75
43
9
2
43
1.50
96170618--96170834
93
2.3
94
81
4
242
36
17
6
40
1.75
96171195--96171279
44
1.9
44
100
0
170
37
15
2
44
1.59
96171466--96171615
67
2.2
68
86
3
214
45
3
6
44
1.46
96181754--96181794
21
2.0
21
85
9
57
43
4
4
46
1.46
96182187--96182224
20
2.0
20
84
5
51
52
2
0
44
1.14
96183007--96183044
14
2.5
16
83
8
53
60
2
0
36
1.11
96185635--96185666
5
6.6
5
92
7
57
18
0
0
81
0.70
96185632--96185665
9
3.7
9
92
7
59
20
0
0
79
0.73
96192640--96192701
27
2.3
26
76
13
63
38
1
11
48
1.49
96199172--96199198
7
3.9
7
100
0
54
25
0
0
74
0.83
96199133--96199212
6
13.0
6
80
10
56
17
6
0
76
0.99
96200430--96200464
1
35.0
1
88
0
52
94
0
5
0
0.32
96201031--96201092
27
2.3
26
76
13
63
38
1
11
48
1.49
96201088--96201119
10
3.3
10
95
4
57
31
6
0
62
1.20
96202172--96202228
23
2.6
21
83
5
69
15
12
22
49
1.78
96208064--96208157
43
2.2
43
80
3
109
24
25
34
15
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96220531--96220614
41
2.0
41
93
0
141
39
17
9
33
1.82
96220912--96220953
13
3.0
14
86
6
59
47
0
2
50
1.14
96221732--96221793
31
2.0
31
87
6
90
33
1
3
61
1.22
96229249--96229370
3
39.3
3
69
21
65
32
3
1
62
1.21
96229249--96229420
17
9.3
18
67
23
74
31
2
2
62
1.25
96229250--96229415
30
5.3
30
73
15
124
32
3
2
62
1.24
96229698--96229723
8
3.2
8
100
0
52
26
0
0
73
0.84
96229656--96229715
23
2.7
23
82
10
63
36
5
0
58
1.20
96229674--96229761
28
3.0
29
77
9
81
34
5
1
59
1.29
96229781--96229831
17
3.2
17
73
21
56
37
1
0
60
1.08
96229779--96229843
14
4.2
14
78
13
58
40
1
0
58
1.07
96229779--96229884
31
3.3
31
74
18
90
34
5
0
58
1.28
96235744--96235789
23
2.0
24
82
4
58
36
2
21
39
1.66
96246354--96246392
17
2.3
17
100
0
78
46
10
5
38
1.60
96247275--96247305
13
2.4
13
100
0
62
77
0
6
16
0.97
96249234--96249275
10
4.1
11
79
14
54
52
0
0
47
1.00
96249761--96249954
94
2.0
95
87
3
275
45
3
2
47
1.33
96250248--96250279
13
2.3
15
89
10
50
62
0
9
28
1.26
96253126--96253176
26
2.0
26
84
0
66
37
5
23
33
1.79
96253326--96253442
9
12.7
9
70
19
73
61
0
3
34
1.19
96253276--96253347
28
2.6
26
79
12
81
51
1
2
44
1.24
96253324--96253397
27
2.7
27
76
15
89
59
0
4
36
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96253324--96253422
27
3.6
27
74
15
87
60
0
3
36
1.12
96253635--96253721
34
2.4
36
79
9
97
32
2
0
65
1.05
96253924--96253956
11
2.9
12
86
13
52
33
0
0
66
0.92
96254179--96254218
11
3.6
11
79
0
53
57
7
15
20
1.61
96255795--96255926
30
4.4
30
82
1
133
27
45
3
23
1.70
96255795--96255926
60
2.2
59
82
2
147
27
45
3
23
1.70
96256422--96256465
23
1.9
23
86
9
63
34
4
0
61
1.16
96256425--96256469
20
2.2
20
84
7
56
35
4
0
60
1.17
96256495--96256636
25
5.5
26
72
14
64
34
6
4
54
1.45
96256500--96256555
15
3.9
14
76
15
53
37
3
1
57
1.27
96256570--96256628
25
2.5
24
78
10
68
33
8
6
50
1.59
96256614--96256672
23
2.8
20
72
16
57
32
6
5
55
1.48
96256789--96256836
16
3.1
15
87
6
60
33
2
2
62
1.18
96257920--96257972
19
2.8
18
80
8
52
30
5
1
62
1.29
96257921--96257980
30
2.1
28
84
6
75
31
6
1
60
1.33
96258848--96258892
21
2.1
21
100
0
90
46
13
8
31
1.74
96259232--96259281
26
2.0
24
88
7
73
30
0
6
64
1.18
96259444--96259543
10
10.8
9
68
23
57
32
5
1
62
1.24
96259482--96259531
18
2.8
18
77
16
59
32
4
2
62
1.25
96259504--96259543
18
2.2
18
86
8
55
32
2
0
65
1.06
96259870--96259911
22
2.0
22
90
4
68
61
0
0
38
0.96
96259982--96260204
123
1.8
122
90
0
356
21
16
10
51
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96267474--96267513
19
2.1
19
95
0
71
35
22
10
32
1.87
96281489--96281513
3
8.3
3
100
0
50
68
0
32
0
0.90
96283295--96283358
25
2.6
25
97
0
119
31
12
35
20
1.90
96284610--96284671
21
2.9
21
73
7
63
38
38
0
22
1.54
96284660--96284697
14
2.7
14
88
8
51
50
31
0
18
1.47
96284743--96284827
21
3.9
21
73
11
80
47
25
1
25
1.60
96284727--96284820
46
2.0
46
93
0
161
44
25
2
27
1.65
96284990--96285076
41
2.1
41
81
6
106
18
21
18
41
1.90
96284990--96285116
40
3.1
39
83
5
137
18
19
19
42
1.89
96286384--96286414
5
6.0
5
92
7
53
38
0
0
61
0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325