Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  19  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4427248--4427280
16
2.0
17
94
5
59
69
6
0
24
1.10
4433806--4433898
5
18.8
5
75
20
81
75
0
6
18
1.01
4433816--4433879
12
5.8
11
79
15
62
75
0
6
18
1.01
4433831--4433898
19
3.5
19
84
15
86
77
0
5
16
0.95
4433838--4433897
14
4.2
15
89
10
83
78
0
5
16
0.92
4452058--4452087
13
2.4
12
94
5
51
90
0
10
0
0.47
4456112--4456136
5
5.0
5
100
0
50
80
0
0
20
0.72
4457765--4457801
19
1.9
19
88
0
56
43
2
16
37
1.62
4457977--4458006
15
1.9
16
93
6
53
40
0
3
56
1.16
4458110--4458427
142
2.2
140
79
9
315
45
2
9
41
1.52
4459221--4459277
15
3.9
15
88
2
89
35
0
12
52
1.39
4459712--4459781
27
2.5
28
82
15
90
15
2
35
45
1.61
4459763--4459807
23
1.9
24
95
4
83
6
4
40
48
1.49
4461389--4461580
52
3.8
50
80
10
189
24
17
29
29
1.97
4468722--4468834
42
2.7
42
90
0
172
29
25
14
30
1.95
4468806--4468928
47
2.7
46
83
5
149
30
26
15
28
1.96
4468953--4469101
31
4.8
31
87
3
210
26
27
18
26
1.98
4469077--4469205
50
2.5
51
88
5
190
26
22
15
35
1.94
4471806--4471958
52
2.9
52
80
2
173
26
18
27
28
1.98
4471822--4472013
52
3.8
50
78
10
180
25
17
28
29
1.97
4474591--4474881
24
12.1
24
97
0
519
36
25
17
20
1.94
4482650--4482940
24
12.1
24
97
0
510
36
25
18
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4494640--4494670
13
2.3
14
94
5
55
51
6
0
41
1.27
4495740--4495810
22
3.2
23
88
6
101
8
5
53
32
1.54
4497195--4497222
14
2.0
14
100
0
56
42
14
7
35
1.73
4497231--4497311
40
2.0
40
100
0
162
45
12
7
34
1.70
4497726--4497757
8
4.0
8
100
0
64
37
0
25
37
1.56
4498311--4498344
18
1.9
17
88
5
50
61
5
2
29
1.34
4501558--4501608
12
3.6
13
76
23
50
64
0
5
29
1.17
4505422--4505515
35
2.8
33
83
9
129
76
13
5
4
1.11
4505709--4505747
17
2.3
17
86
8
53
17
10
0
71
1.12
4506097--4506121
2
12.5
2
100
0
50
48
0
0
52
1.00
4512126--4512159
17
2.1
16
89
10
52
52
0
0
47
1.00
4514959--4514998
16
2.5
16
79
0
53
75
5
0
20
0.99
4515128--4515173
19
2.4
19
85
7
58
56
4
2
36
1.31
4516526--4516615
39
2.2
40
88
3
128
52
6
2
38
1.40
4516913--4516965
20
2.8
18
81
13
70
49
0
1
49
1.12
4521226--4521380
83
1.9
84
90
1
249
25
27
12
34
1.92
4524100--4524158
30
2.0
30
89
0
91
57
13
3
25
1.52
4525155--4525187
16
2.1
16
94
0
57
51
0
0
48
1.00
4533066--4533114
3
16.3
3
100
0
98
32
0
0
67
0.91
4533256--4533308
21
2.5
21
75
9
54
33
0
0
66
0.92
4533620--4533657
3
12.7
3
100
0
76
68
0
0
31
0.90
4536197--4536221
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4541575--4541606
17
1.9
16
93
6
55
59
0
3
37
1.13
4545683--4545800
31
3.8
31
94
1
191
44
19
11
25
1.83
4549358--4549420
28
2.4
26
80
15
67
28
6
6
58
1.47
4557482--4558073
302
2.0
302
97
0
1123
32
17
19
30
1.95
4558381--4558428
16
3.0
15
79
11
51
52
0
2
45
1.12
4558431--4558465
17
2.0
18
88
5
54
77
5
8
8
1.13
4558455--4558508
21
2.6
19
72
16
54
68
1
24
5
1.21
4558483--4558512
15
2.0
15
93
0
51
70
0
26
3
1.03
4558450--4558507
27
2.1
28
81
9
66
70
1
20
6
1.19
4559363--4559411
6
8.2
6
81
0
53
20
18
16
44
1.86
4568960--4569004
20
2.2
20
96
0
81
44
4
6
44
1.50
4569116--4569196
41
2.0
42
85
2
110
13
19
0
66
1.24
4574161--4574194
2
17.0
2
93
0
59
50
2
0
47
1.16
4577110--4577150
21
2.0
21
90
0
64
19
29
21
29
1.98
4580430--4580466
19
1.9
19
94
0
65
59
0
18
21
1.38
4587804--4587867
31
2.0
32
84
3
85
20
10
9
59
1.58
4589722--4589760
19
2.1
19
100
0
78
35
10
23
30
1.88
4592222--4592292
37
1.9
37
100
0
142
33
8
14
43
1.75
4594829--4594871
22
2.0
20
86
8
59
39
0
0
60
0.97
4594863--4594888
7
3.7
7
100
0
52
15
0
0
84
0.62
4595356--4595387
2
16.0
2
100
0
64
50
0
0
50
1.00
4596758--4596818
23
2.3
28
76
23
69
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4601225--4601251
5
5.4
5
100
0
54
0
22
0
77
0.76
4603956--4603988
2
16.5
2
100
0
66
51
0
48
0
1.00
4608563--4608689
42
3.0
42
86
6
170
29
26
14
29
1.95
4608606--4608773
88
1.9
90
80
10
200
29
25
15
29
1.96
4608649--4608773
47
2.7
46
82
4
153
30
25
16
28
1.96
4608796--4608944
31
4.8
31
89
0
226
26
26
18
28
1.98
4608926--4609041
50
2.5
45
83
12
137
27
22
15
34
1.94
4608938--4609036
50
2.0
50
95
0
180
27
22
15
35
1.94
4613550--4613608
22
2.7
22
78
0
64
18
22
16
42
1.89
4615722--4615772
18
2.8
19
79
5
61
35
13
17
33
1.89
4619054--4619354
35
8.7
35
82
5
227
31
23
14
29
1.95
4619055--4619354
104
2.9
104
76
4
271
31
24
15
30
1.95
4619061--4619354
139
2.1
139
78
6
308
30
23
15
30
1.95
4623839--4623885
25
2.0
25
83
8
62
27
14
4
53
1.60
4624194--4624411
46
4.9
46
87
8
308
22
25
15
36
1.93
4624146--4624410
92
3.0
92
85
5
296
22
24
14
38
1.91
4624325--4624400
38
2.0
38
100
0
152
23
26
18
31
1.97
4624353--4624477
62
2.0
62
100
0
250
27
24
16
32
1.96
4624672--4624810
61
2.3
62
89
1
208
25
23
19
30
1.98
4629381--4629485
53
2.0
53
94
0
183
37
21
22
18
1.94
4630605--4630652
11
4.9
10
83
16
57
2
25
2
70
1.09
4630575--4630649
25
3.2
25
73
17
63
5
28
1
65
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4631618--4631723
53
2.0
53
98
0
203
32
16
11
40
1.83
4656949--4657033
44
1.9
44
87
0
125
45
14
9
30
1.76
4658747--4658808
30
2.1
31
81
6
74
37
3
14
45
1.61
4662966--4663020
17
3.2
17
71
19
51
65
1
5
27
1.25
4663473--4663511
14
2.6
15
84
12
53
58
7
0
33
1.26
4663539--4663585
18
2.7
18
87
6
62
59
0
2
38
1.09
4665644--4665679
18
2.1
17
89
5
54
69
2
11
16
1.29
4665487--4665808
175
1.9
166
81
10
391
35
18
16
29
1.93
4665697--4666039
73
4.5
73
78
11
258
33
22
15
28
1.95
4665827--4665988
88
1.9
87
89
1
252
37
22
14
26
1.92
4672114--4672150
4
9.2
4
100
0
74
75
0
24
0
0.80
4682761--4682815
17
3.2
17
71
19
51
65
1
5
27
1.25
4683267--4683305
14
2.6
15
84
12
53
58
7
0
33
1.26
4683333--4683379
18
2.7
18
87
6
62
59
0
2
38
1.09
4683840--4683873
16
2.1
16
100
0
68
50
0
50
0
1.00
4688807--4688935
44
2.9
44
96
2
233
42
13
14
28
1.84
4691582--4691610
13
2.2
13
100
0
58
13
6
6
72
1.26
4695830--4695869
20
2.0
21
90
5
64
47
5
12
35
1.63
4699122--4699193
20
3.5
20
78
9
74
59
2
5
31
1.35
4699161--4699199
20
2.0
20
89
0
60
64
5
2
28
1.28
4699368--4699426
19
3.0
20
80
16
79
28
5
3
62
1.32
4699682--4699847
85
1.9
87
83
2
219
37
9
15
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4702605--4702632
13
2.2
13
100
0
56
50
28
7
14
1.69
4706964--4707291
165
2.0
166
92
1
552
22
30
10
35
1.89
4710164--4710251
43
2.0
43
97
0
167
37
12
17
32
1.87
4718073--4718111
21
1.9
21
89
5
62
66
2
0
30
1.05
4719424--4719483
23
2.8
22
81
18
65
55
0
0
45
0.99
4721010--4721114
28
3.7
27
80
11
90
65
2
3
27
1.24
4721073--4721150
20
3.9
19
75
9
66
64
2
1
32
1.15
4721073--4721150
40
2.0
40
84
5
104
64
2
1
32
1.15
4729089--4729136
19
2.6
19
78
18
57
60
0
2
37
1.09
4735593--4735752
26
6.2
26
90
5
245
35
24
6
34
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325