genome.fa.s4.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  182  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55909420--55909527	40	2.7	38	85	8	128	21	29	25	23	1.99
55915856--55916026	93	1.8	93	96	0	315	28	29	21	21	1.98
55915848--55916023	46	3.8	46	80	12	225	28	28	21	21	1.98
55918394--55918482	30	3.0	30	80	8	101	57	15	16	10	1.65
55918394--55918473	15	5.4	15	80	7	92	58	13	17	10	1.62
55918405--55918482	15	5.2	15	78	9	79	56	15	16	11	1.67
55921393--55921563	93	1.8	93	96	0	315	28	29	21	21	1.98
55921385--55921560	46	3.8	46	80	12	225	28	28	21	21	1.98
55923972--55924031	28	2.2	26	77	11	66	26	26	11	35	1.91
55923987--55924057	28	2.5	28	86	0	88	30	28	9	30	1.89
55925881--55926190	96	3.2	96	83	2	365	24	28	19	27	1.98
55925880--55926190	144	2.2	144	82	5	362	24	28	19	27	1.98
55925881--55926190	48	6.5	48	79	4	304	24	28	19	27	1.98
55932221--55932377	47	3.4	48	79	6	144	24	30	19	24	1.98
55932287--55932388	46	2.2	46	84	6	127	23	30	18	27	1.98
55932312--55932486	46	3.8	46	80	6	165	24	29	18	28	1.98
55938543--55938628	23	3.2	29	67	20	78	25	25	0	48	1.51
55938536--55938636	52	2.0	51	94	2	175	26	21	0	51	1.48
55941179--55941329	40	3.8	40	77	13	141	25	24	27	22	2.00
55947251--55947417	40	4.2	40	81	2	176	24	27	22	25	2.00
55947267--55947417	80	1.9	79	83	6	198	23	27	22	25	2.00
55954670--55954836	40	4.2	40	81	2	176	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55954686--55954836	80	1.9	79	83	6	198	23	27	22	25	2.00
55969723--55969873	40	3.8	40	77	11	132	25	24	27	21	1.99
55969760--55969889	40	3.2	40	79	2	154	23	23	28	23	2.00
55969722--55969889	80	2.1	80	82	6	207	25	23	27	22	2.00
55971812--55971980	93	1.8	93	84	0	230	22	18	27	31	1.97
55977922--55977994	35	2.1	35	97	0	137	35	5	20	38	1.76
55984715--55984919	55	3.8	54	81	3	234	35	17	24	22	1.95
55984719--55984919	108	1.8	110	87	4	300	34	17	24	22	1.96
55985035--55985079	23	1.9	24	90	4	74	42	11	24	22	1.86
55985158--55985188	16	1.9	16	93	0	53	41	0	22	35	1.54
55987871--55987999	46	2.8	46	95	0	222	29	29	21	19	1.98
55987879--55988018	46	3.0	45	88	4	140	28	29	21	20	1.98
55995265--55995410	40	3.7	40	84	0	175	24	27	21	26	2.00
55995297--55995448	40	3.8	40	84	5	164	23	25	22	28	1.99
56002257--56002423	40	4.2	40	78	6	160	25	22	27	24	2.00
56010805--56010898	46	2.0	46	100	0	188	44	2	17	36	1.60
56013758--56013814	20	2.8	20	94	0	96	35	12	19	33	1.89
56013746--56013814	11	6.7	11	71	14	58	34	13	18	33	1.90
56013862--56013931	25	2.8	25	91	0	113	25	25	24	24	2.00
56014151--56014228	31	2.5	31	87	2	113	34	20	23	21	1.97
56017328--56017410	29	2.9	29	94	0	139	27	14	31	26	1.95
56019369--56019393	3	8.3	3	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56021564--56021631	20	3.4	20	95	0	127	36	11	19	32	1.88
56021575--56021631	11	5.5	11	72	16	59	36	12	19	31	1.89
56021566--56021622	9	5.9	9	73	15	51	35	8	21	35	1.84
56021679--56021748	25	2.8	25	84	0	95	27	24	22	25	2.00
56021969--56022042	31	2.4	31	93	2	123	32	18	27	21	1.97
56022881--56022982	49	2.1	50	81	5	118	28	11	21	38	1.89
56022953--56023131	50	3.6	49	81	9	195	26	8	21	43	1.81
56022988--56023113	49	2.5	50	90	1	191	29	7	22	41	1.80
56023734--56023760	2	13.5	2	100	0	54	51	0	0	48	1.00
56024408--56024570	42	3.8	42	77	8	141	31	25	15	26	1.96
56032536--56032763	49	4.6	50	81	5	225	30	26	18	25	1.98
56040026--56040255	50	4.6	49	82	8	268	29	26	18	25	1.98
56042635--56042751	42	2.7	43	82	4	146	26	17	23	32	1.96
56053023--56053228	40	5.2	40	80	4	211	25	25	22	26	2.00
56053023--56053227	79	2.6	80	80	7	222	25	25	22	25	2.00
56056604--56056920	47	6.7	47	87	5	433	32	7	31	29	1.84
56056604--56056920	96	3.3	93	86	8	424	32	7	31	29	1.84
56064516--56064676	39	4.2	39	93	1	263	22	20	32	24	1.98
56064516--56064707	39	4.9	39	90	1	253	22	21	31	23	1.98
56072466--56072628	39	4.2	39	91	0	263	22	20	33	23	1.97
56072466--56072658	39	4.9	39	88	0	251	22	21	32	23	1.98
56074509--56074576	21	3.1	21	76	19	68	55	1	1	41	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56074588--56074815	43	5.3	43	87	1	287	23	20	28	27	1.99
56074784--56074870	43	2.0	44	88	6	133	27	20	19	32	1.97
56074588--56074858	129	2.1	129	82	1	319	24	20	27	27	1.99
56074580--56074858	86	3.3	85	82	3	319	24	20	26	28	1.99
56077862--56077952	37	2.4	37	92	1	155	24	32	18	24	1.97
56078048--56078164	49	2.4	49	91	0	189	28	32	10	29	1.90
56080208--56080305	39	2.4	41	80	8	112	25	23	24	26	2.00
56080789--56081008	29	7.7	29	98	1	417	23	32	16	27	1.96
56080789--56081008	114	1.9	116	97	1	417	23	32	16	27	1.96
56083098--56083188	37	2.4	37	90	1	146	25	31	18	24	1.97
56083284--56083400	49	2.4	49	91	0	189	28	32	10	29	1.90
56092918--56093090	46	3.7	46	77	13	183	31	29	17	21	1.96
56092925--56093096	93	1.8	93	92	0	290	30	29	19	21	1.97
56093512--56093572	30	2.0	30	83	0	77	31	19	6	42	1.77
56098713--56099153	47	9.4	47	88	2	634	27	29	8	33	1.87
56098976--56099098	22	5.3	22	62	21	63	26	30	10	31	1.90
56102642--56102953	40	7.8	40	93	0	509	26	31	21	20	1.98
56104814--56105347	47	11.4	47	88	2	786	27	30	9	32	1.88
56105077--56105199	22	5.3	22	62	21	63	26	30	10	32	1.90
56104814--56105347	94	5.7	94	93	2	876	27	30	9	32	1.88
56104814--56105347	187	2.8	188	92	1	876	27	30	9	32	1.88
56113278--56113378	40	2.5	40	91	1	159	24	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56117392--56117564	44	3.7	45	72	12	145	26	28	17	28	1.97
56122548--56122587	20	2.0	20	90	4	64	55	7	7	30	1.56
56143821--56143861	2	20.5	2	100	0	82	48	0	0	51	1.00
56149348--56149469	37	3.3	37	88	4	183	23	31	18	26	1.97
56149571--56149834	49	5.4	49	97	0	483	29	32	9	28	1.88
56152218--56152327	40	2.8	40	84	0	139	26	22	26	24	2.00
56152218--56152367	40	3.8	39	78	7	124	26	22	26	25	2.00
56156241--56156274	17	2.0	17	100	0	68	17	35	23	23	1.95
56157403--56157690	42	6.8	42	83	2	337	32	23	18	25	1.97
56157403--56157683	125	2.2	126	84	2	350	32	24	18	24	1.97
56157453--56157690	83	2.8	84	85	1	325	34	23	17	23	1.96
56164252--56164560	42	7.5	42	80	8	316	33	23	18	24	1.96
56164342--56164402	32	1.9	32	96	0	113	40	19	16	22	1.90
56170482--56170651	46	3.7	46	80	13	158	27	18	31	22	1.98
56176306--56176496	39	4.8	40	85	3	192	24	31	20	24	1.98
56176350--56176506	39	4.0	39	89	4	212	21	31	19	27	1.98
56176310--56176506	78	2.5	79	83	4	238	22	31	20	25	1.98
56184424--56184575	79	1.9	79	88	7	229	23	31	21	23	1.98
56184424--56184586	38	4.2	39	85	12	217	24	31	20	23	1.98
56188143--56188332	39	4.8	40	88	1	208	24	31	21	22	1.98
56188179--56188340	39	4.2	39	91	2	254	24	32	20	23	1.98
56188187--56188342	77	2.0	78	92	1	260	22	31	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56196253--56196441	38	4.8	40	88	1	199	23	31	21	22	1.98
56196297--56196451	38	4.0	38	93	1	247	21	31	20	25	1.98
56198119--56198204	43	2.0	43	88	0	127	29	32	19	18	1.96
56198854--56199014	40	4.0	40	93	1	252	27	31	21	19	1.97
56210037--56210191	39	4.0	39	93	0	238	25	21	27	26	1.99
56231513--56231713	51	4.0	52	78	12	206	25	16	27	30	1.97
56237237--56237344	26	4.2	26	91	0	180	37	24	6	32	1.81
56243024--56243051	13	2.2	13	100	0	56	28	0	14	57	1.38
56243596--56243877	40	7.2	40	93	4	477	23	21	27	27	1.99
56250379--56250406	13	2.2	13	100	0	56	28	0	14	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325