genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  100  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30450815--30451018	43	4.7	43	87	4	270	25	15	28	30	1.96
30453173--30453358	40	4.7	40	86	5	218	25	22	26	25	2.00
30453226--30453381	80	2.0	79	82	8	192	27	20	26	25	1.99
30456134--30456309	46	3.8	46	81	10	232	20	21	29	28	1.98
30456130--30456301	93	1.8	93	96	0	317	20	22	30	27	1.98
30459258--30459326	15	4.6	15	83	0	84	11	17	13	57	1.64
30459249--30459336	30	3.0	30	81	8	99	10	17	15	56	1.66
30461720--30461895	46	3.8	46	81	10	232	20	21	29	28	1.98
30461716--30461887	93	1.8	93	96	0	317	20	22	30	27	1.98
30469673--30469818	40	3.7	40	82	7	172	23	23	27	26	2.00
30469673--30469841	80	2.1	80	80	7	184	24	22	26	26	2.00
30474383--30474426	18	2.4	18	96	0	79	22	25	11	40	1.87
30478562--30478627	14	4.3	15	73	19	55	45	0	0	54	0.99
30489937--30490004	28	2.4	28	92	4	111	29	27	16	26	1.97
30491710--30491778	28	2.5	28	95	2	122	18	10	27	43	1.82
30493386--30493424	20	2.0	20	89	0	60	51	10	2	35	1.50
30496987--30497087	28	3.5	28	86	6	114	29	13	26	29	1.94
30509646--30509746	28	3.5	28	86	6	114	29	13	26	29	1.94
30514883--30514951	28	2.5	28	92	2	113	20	10	26	43	1.83
30516569--30516607	20	2.0	20	89	0	60	51	10	2	35	1.50
30517002--30517123	43	2.8	44	80	9	137	33	24	17	24	1.96
30518931--30519121	41	4.7	41	86	2	278	28	26	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30518931--30519121	81	2.3	82	89	2	278	28	26	23	21	1.99
30527128--30527269	44	3.3	42	80	6	126	24	19	26	29	1.99
30527173--30527276	43	2.4	43	80	4	113	25	21	25	27	1.99
30535616--30535670	28	2.0	28	82	10	69	50	1	1	45	1.22
30535622--30535675	27	2.0	27	86	13	76	46	1	1	50	1.23
30547746--30547779	16	2.2	15	89	5	50	55	2	0	41	1.15
30550331--30550362	2	16.0	2	100	0	64	50	0	0	50	1.00
30551147--30551204	21	2.7	21	86	2	80	24	36	5	34	1.78
30555277--30555447	49	3.5	49	76	3	182	30	28	14	26	1.95
30555681--30555734	27	2.0	27	85	0	72	38	14	7	38	1.75
30559878--30559965	33	2.7	33	89	0	131	27	22	20	29	1.99
30564461--30564663	40	5.1	40	91	0	316	17	18	28	35	1.93
30566402--30566427	2	13.0	2	100	0	52	50	0	0	50	1.00
30570656--30570759	37	2.8	37	92	2	174	26	30	19	23	1.98
30570899--30571094	48	4.0	48	92	2	329	31	28	6	34	1.82
30570908--30571094	98	1.9	98	96	0	347	31	27	6	34	1.82
30575647--30575769	63	2.0	63	100	0	246	19	16	18	45	1.86
30577018--30577135	41	3.1	41	60	28	98	32	17	28	21	1.96
30576986--30577149	71	2.3	71	100	0	328	35	17	28	18	1.94
30583647--30583764	41	3.1	41	60	28	98	32	17	28	21	1.96
30583615--30583778	71	2.3	71	100	0	328	35	17	28	18	1.94
30589556--30589751	40	4.9	40	90	2	304	17	18	28	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30589556--30589773	40	5.4	40	88	2	303	18	20	27	33	1.96
30593078--30593226	80	1.9	80	81	2	183	22	30	24	22	1.99
30593119--30593226	40	2.7	38	85	8	128	21	29	25	23	1.99
30601204--30601367	77	2.1	78	82	9	194	23	28	22	26	1.99
30607345--30607530	40	4.7	39	84	2	185	25	27	20	26	1.99
30611755--30611925	40	4.3	39	77	10	159	28	21	26	23	1.99
30613900--30613928	8	3.6	8	100	0	58	10	24	10	55	1.65
30616043--30616082	21	2.0	20	85	5	53	27	25	32	15	1.95
30617202--30617472	47	5.9	44	73	13	140	25	28	17	28	1.98
30623382--30623481	33	3.0	34	78	10	100	25	22	24	29	1.99
30637747--30637952	40	5.2	40	88	4	285	26	28	21	22	1.99
30637747--30637952	78	2.6	78	87	6	281	26	28	21	22	1.99
30645739--30645906	40	4.2	40	83	2	196	27	27	20	23	1.99
30652297--30652416	41	2.9	42	76	8	127	25	16	25	32	1.96
30652427--30652615	56	3.4	55	82	8	233	25	13	26	33	1.94
30653942--30653974	13	2.4	14	90	5	50	24	0	12	63	1.28
30665353--30665471	29	4.2	29	86	2	143	31	26	12	29	1.93
30673213--30673392	51	3.5	51	92	0	288	27	28	21	22	1.99
30676327--30676462	40	3.4	40	87	2	184	22	17	27	33	1.96
30679106--30679415	47	6.5	48	78	9	264	29	26	15	28	1.96
30685467--30685583	46	2.5	46	95	0	207	23	18	26	30	1.98
30689972--30690105	40	3.3	40	92	0	205	23	18	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30691328--30691368	22	1.9	22	95	5	75	21	24	43	9	1.83
30693257--30693426	46	3.7	45	78	10	139	23	30	20	25	1.98
30693349--30693498	47	3.3	48	75	18	165	24	29	20	26	1.99
30693305--30693498	90	2.1	93	89	5	297	24	29	19	26	1.98
30702970--30703120	40	3.8	40	76	6	146	27	24	27	21	1.99
30708079--30708294	46	4.6	48	74	17	179	23	28	19	28	1.98
30708127--30708331	47	4.4	46	75	17	174	23	28	20	26	1.99
30708127--30708345	94	2.3	94	91	3	359	23	29	20	26	1.99
30714684--30714714	14	2.2	14	94	0	53	61	6	0	32	1.21
30716503--30716537	18	2.0	18	88	5	54	20	40	22	17	1.92
30719314--30719473	29	5.5	29	82	4	180	26	16	31	25	1.97
30724392--30724451	27	2.2	27	90	0	93	31	21	23	23	1.98
30727818--30727855	20	1.9	20	88	0	58	52	10	2	34	1.50
30729410--30729434	10	2.5	10	100	0	50	36	20	0	44	1.52
30733798--30733864	29	2.3	30	84	7	84	29	22	0	47	1.51
30735170--30735289	44	2.8	43	80	6	154	25	15	27	32	1.95
30741941--30742000	27	2.3	26	85	2	75	35	20	23	21	1.96
30741968--30742109	67	2.1	67	86	5	194	30	21	28	19	1.97
30742039--30742090	27	2.0	26	84	3	68	34	21	26	17	1.95
30742741--30742821	27	3.0	27	83	0	108	24	20	17	37	1.94
30742715--30742821	54	2.0	54	81	3	126	24	21	19	34	1.96
30742805--30742903	27	3.7	27	70	8	67	30	10	22	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30742866--30743171	27	11.4	27	78	4	237	29	8	20	40	1.83
30742872--30743171	107	2.8	107	81	4	309	30	9	20	40	1.83
30752620--30752786	40	4.2	40	81	2	176	23	26	22	26	2.00
30753605--30753650	17	2.5	19	74	22	53	34	23	17	23	1.96
30758004--30758183	40	4.5	39	77	10	161	27	22	26	23	1.99
30766029--30766199	40	4.3	39	77	10	159	28	21	26	23	1.99
30771138--30771164	2	13.5	2	100	0	54	48	0	0	51	1.00
30777221--30777254	18	1.9	17	94	5	59	8	17	8	64	1.47
30778376--30778422	24	2.0	24	82	0	58	31	23	19	25	1.98
30778460--30778519	9	6.2	9	74	14	57	36	11	18	33	1.87
30778459--30778524	20	3.3	20	93	0	114	37	12	18	31	1.87
30778470--30778524	11	5.4	11	79	16	73	38	12	18	30	1.88
30778576--30778718	23	6.1	23	90	3	214	28	20	18	31	1.97
30778576--30778718	47	3.1	46	90	3	214	28	20	18	31	1.97
30778933--30778996	31	2.1	31	90	0	101	35	15	23	25	1.94
30782376--30782423	24	2.0	24	91	0	78	35	4	29	31	1.76
30783548--30783686	46	3.0	46	84	4	163	30	18	28	22	1.97
30785524--30785598	22	3.4	22	90	0	114	18	40	20	21	1.92
30797742--30797791	3	16.7	3	100	0	100	68	0	0	32	0.90
30800897--30801043	48	3.0	46	83	8	179	23	15	27	32	1.95
30806429--30806503	31	2.4	30	78	6	78	30	16	10	42	1.81
30806429--30806506	15	5.1	15	79	4	75	30	16	10	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30807725--30807792	24	2.8	24	95	0	118	36	17	22	23	1.94
30807828--30808026	51	3.9	51	85	3	267	31	13	23	31	1.93
30810261--30810353	24	3.9	24	77	13	102	25	23	22	27	2.00
30810449--30810545	42	2.3	42	78	7	106	41	13	11	34	1.80
30810478--30810611	66	2.0	66	95	0	241	35	14	13	36	1.85
30814330--30814360	15	2.1	15	100	0	62	32	22	6	38	1.80
30814607--30814876	46	5.7	50	75	12	187	27	20	28	22	1.99
30814702--30814876	99	1.8	94	87	8	262	26	19	29	24	1.98
30821390--30821414	7	3.6	7	100	0	50	76	0	12	12	1.04
30824959--30825080	46	2.7	44	86	8	149	27	21	28	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318