genome.fa.s2.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  134  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41030848--41030935	27	3.3	27	84	7	108	25	21	18	35	1.95
41030914--41030991	27	2.9	27	79	9	97	32	11	19	37	1.87
41033056--41033274	79	2.8	79	90	4	336	22	23	28	25	1.99
41033056--41033274	118	1.9	118	88	5	336	22	23	28	25	1.99
41033056--41033274	39	5.6	41	87	7	312	22	23	28	25	1.99
41034476--41034579	27	3.9	27	78	5	111	27	8	22	41	1.83
41034530--41034593	27	2.4	27	81	0	92	29	6	23	40	1.79
41034572--41034727	27	5.8	27	90	0	222	39	10	21	28	1.86
41034546--41034719	54	3.2	54	85	0	195	40	9	18	31	1.84
41037359--41037521	70	2.3	71	98	1	319	19	28	17	34	1.94
41044895--41045053	70	2.3	71	96	2	295	20	28	16	35	1.94
41051141--41051304	71	2.3	71	100	0	328	18	28	17	35	1.94
41051141--41051338	71	2.8	70	91	3	258	20	28	17	33	1.95
41058707--41058870	71	2.3	71	100	0	328	18	28	17	35	1.94
41058707--41058904	71	2.8	70	91	3	258	20	28	17	33	1.95
41064955--41065139	79	2.3	80	82	7	216	23	21	27	27	1.99
41064956--41065139	40	4.6	39	79	9	185	23	21	27	26	1.99
41065011--41065162	79	1.9	79	80	7	175	25	19	27	27	1.99
41069562--41069696	41	3.3	40	75	5	137	22	28	14	34	1.94
41071467--41071569	29	3.5	28	79	7	91	20	16	33	29	1.94
41074038--41074104	25	2.7	25	73	0	71	35	16	20	26	1.94
41074310--41074394	42	2.0	42	100	0	170	29	4	28	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41078209--41078301	46	2.0	46	97	0	177	43	20	12	23	1.86
41080447--41080507	25	2.4	25	100	0	122	45	14	22	16	1.84
41080426--41080491	6	10.8	6	75	15	64	48	15	19	16	1.81
41080452--41080592	44	3.3	43	75	16	143	45	14	21	19	1.85
41080450--41080543	25	4.0	24	76	17	99	43	13	23	19	1.86
41080477--41080560	19	4.4	19	75	21	86	44	13	22	20	1.86
41080502--41080583	38	2.2	38	86	4	112	46	12	19	21	1.82
41080477--41080592	19	5.8	19	67	25	60	45	13	20	19	1.84
41080922--41080986	22	3.0	22	86	8	96	33	23	23	20	1.97
41081207--41081237	16	1.9	16	93	0	53	35	16	19	29	1.93
41081383--41081485	53	2.0	52	90	5	163	25	24	16	33	1.96
41081379--41081484	26	4.0	27	86	3	144	24	23	17	33	1.96
41081380--41081491	27	4.2	26	85	3	134	26	22	16	34	1.95
41092590--41092614	7	3.6	7	100	0	50	12	0	28	60	1.32
41093485--41093554	27	2.5	28	88	2	106	25	11	28	34	1.91
41099242--41099430	41	4.7	41	82	5	215	35	15	25	22	1.94
41099212--41099430	120	1.8	123	85	5	311	34	15	26	23	1.95
41099331--41099397	21	3.2	21	67	12	57	29	13	32	23	1.93
41106693--41106901	40	5.2	39	82	1	202	25	24	22	27	2.00
41106693--41106898	80	2.6	81	82	3	238	24	25	22	27	2.00
41110792--41110865	29	2.6	29	95	0	139	27	14	31	27	1.95
41110849--41110924	29	2.6	29	78	0	89	22	19	35	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41110792--41110924	58	2.3	58	80	2	133	24	17	33	24	1.96
41118664--41118737	29	2.6	29	95	0	139	27	14	31	27	1.95
41118721--41118796	29	2.6	29	78	0	89	22	19	35	22	1.96
41118664--41118796	58	2.3	58	80	2	133	24	17	33	24	1.96
41125695--41125793	28	3.5	28	81	9	112	29	25	16	29	1.96
41132118--41132335	24	9.1	24	96	1	375	36	25	17	20	1.95
41136672--41136704	12	2.6	13	85	9	50	9	45	0	45	1.35
41137492--41137521	16	1.9	15	93	6	51	53	23	20	3	1.60
41137770--41137834	28	2.3	28	91	0	103	33	26	7	32	1.85
41137950--41138040	27	3.2	28	78	4	85	20	25	20	32	1.97
41137940--41138054	55	2.1	56	80	11	130	18	23	22	35	1.95
41138493--41138531	19	2.1	19	85	0	51	15	5	7	71	1.26
41138452--41138981	268	2.0	267	86	4	755	33	12	15	38	1.85
41141704--41141789	37	2.3	37	97	0	163	23	33	19	23	1.97
41141838--41142105	48	5.6	48	93	0	428	29	27	8	33	1.87
41142083--41142252	47	3.6	47	95	0	304	30	30	8	31	1.86
41141833--41142152	144	2.2	143	83	4	349	29	27	8	34	1.86
41149906--41149970	28	2.3	28	94	0	112	33	27	7	30	1.85
41150076--41150165	27	3.2	28	81	7	112	18	24	24	32	1.97
41150086--41150176	27	3.2	28	81	4	94	20	26	20	31	1.98
41150076--41150190	55	2.1	56	82	8	137	18	24	22	34	1.96
41150629--41150667	19	2.1	19	85	0	51	15	5	7	71	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41152147--41152465	46	7.0	46	86	4	380	22	23	13	40	1.90
41152210--41152275	21	3.2	21	64	20	57	19	22	12	45	1.83
41156918--41157064	43	3.4	43	75	10	131	28	16	25	29	1.97
41160907--41160967	30	2.0	30	83	0	77	31	22	8	37	1.84
41167267--41167378	45	2.5	45	91	0	170	32	26	16	24	1.96
41171097--41171166	27	2.6	27	97	2	131	31	27	12	28	1.93
41176283--41176317	2	17.5	2	87	0	52	48	2	0	48	1.16
41184741--41184925	40	4.6	39	85	4	217	28	22	25	23	2.00
41184740--41184946	80	2.6	80	83	4	247	26	22	26	25	2.00
41184739--41184946	40	5.2	39	83	5	211	26	22	25	25	2.00
41191842--41191915	29	2.6	29	95	0	139	27	31	14	27	1.95
41191783--41191915	58	2.3	58	80	2	133	24	33	17	24	1.96
41201363--41201618	40	6.4	40	86	3	295	23	21	28	26	1.99
41201361--41201584	120	1.9	121	87	4	337	22	21	28	27	1.99
41203007--41203050	22	2.0	21	83	16	54	31	18	13	36	1.90
41205376--41205538	81	2.0	81	96	0	299	24	28	24	22	1.99
41205348--41205541	40	4.8	40	91	3	302	24	28	24	22	1.99
41208470--41208599	40	3.2	40	84	4	174	22	24	29	23	1.99
41216454--41216583	40	3.2	40	84	4	174	22	24	29	23	1.99
41220059--41220135	27	2.9	27	82	7	102	22	18	19	40	1.92
41220467--41220529	18	3.6	18	76	2	65	25	17	15	41	1.89
41225287--41225459	93	1.9	93	92	0	292	22	16	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41225283--41225495	93	2.3	92	86	2	291	23	17	27	31	1.97
41232245--41232286	21	2.0	20	86	4	57	30	19	7	42	1.78
41235592--41235672	33	2.5	33	91	4	128	29	24	20	24	1.99
41240159--41240405	40	6.2	39	88	3	327	26	28	21	23	1.99
41243396--41243544	80	1.9	80	81	2	183	22	30	24	22	1.99
41243437--41243544	40	2.7	38	85	8	128	21	29	25	23	1.99
41251369--41251617	38	6.5	39	87	6	307	26	28	21	23	1.99
41251369--41251617	77	3.2	77	87	5	319	26	28	21	23	1.99
41252779--41252963	40	4.6	40	96	1	327	25	28	23	22	1.99
41260345--41260515	92	1.8	93	93	1	299	27	29	22	21	1.99
41260337--41260511	46	3.8	46	80	11	214	28	28	21	21	1.99
41260388--41260530	46	3.1	45	73	13	139	29	28	20	20	1.98
41263501--41263649	40	3.7	40	90	3	237	25	26	23	24	2.00
41267538--41267602	28	2.3	28	94	0	112	33	27	7	30	1.85
41267719--41267797	27	2.8	28	78	5	88	21	24	22	31	1.98
41267718--41267808	27	3.2	28	76	4	76	21	25	20	31	1.98
41268261--41268299	19	2.1	19	85	0	51	15	5	7	71	1.26
41272853--41272988	60	2.3	60	82	7	152	30	20	23	25	1.99
41274484--41274520	17	2.2	17	90	0	56	16	21	40	21	1.91
41277087--41277155	28	2.5	28	95	2	122	18	10	27	43	1.82
41278784--41278821	20	1.9	20	88	0	58	52	10	2	34	1.50
41285713--41285843	30	4.5	30	86	8	171	28	25	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41285712--41285843	58	2.3	58	85	4	176	28	26	13	31	1.94
41291066--41291172	39	2.7	38	83	11	119	21	29	25	23	1.99
41291066--41291215	40	3.8	39	76	10	126	22	27	24	26	1.99
41299111--41299259	80	1.9	80	81	2	183	22	30	24	22	1.99
41299152--41299259	40	2.7	38	85	8	128	21	29	25	23	1.99
41300719--41301232	257	2.0	256	87	3	730	31	21	12	35	1.90
41310526--41310650	40	3.1	40	96	0	223	23	20	24	32	1.98
41313205--41313364	24	6.7	24	81	2	171	33	31	14	21	1.93
41314961--41315031	35	2.0	35	97	0	133	32	11	18	38	1.86
41315816--41315851	16	2.2	16	90	0	54	61	13	16	8	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318