genome.fa.s2.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  43  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12047272--12047413	47	3.0	48	89	9	220	28	21	21	28	1.99
12047605--12047668	31	2.1	31	90	0	101	35	15	23	25	1.94
12054029--12054062	18	1.9	17	94	5	59	8	17	8	64	1.47
12055277--12055332	11	5.5	11	71	16	57	37	14	19	28	1.91
12055266--12055332	20	3.3	20	89	0	98	35	13	20	29	1.91
12055381--12055523	47	3.0	48	86	10	195	29	20	20	29	1.98
12055381--12055523	23	6.0	24	87	8	195	29	20	20	29	1.98
12055716--12055779	31	2.1	31	90	0	101	35	15	23	25	1.94
12057832--12057915	37	2.5	34	84	11	102	27	13	28	30	1.94
12062632--12062865	48	4.9	48	74	4	193	30	18	23	26	1.98
12062633--12062874	96	2.5	96	80	4	254	30	19	23	26	1.98
12063486--12063524	21	1.9	19	85	10	51	53	2	10	33	1.48
12067737--12067866	39	3.2	40	82	3	111	24	22	26	26	2.00
12067780--12067866	39	2.2	39	95	0	156	22	24	26	26	2.00
12067780--12067879	39	2.6	39	90	3	139	23	23	27	27	2.00
12075755--12075938	40	4.6	39	75	6	138	26	23	27	22	2.00
12075795--12075983	80	2.4	81	77	4	186	23	24	29	22	1.99
12081820--12082003	40	4.6	39	75	6	138	26	23	27	22	2.00
12081860--12082048	80	2.4	81	77	4	186	23	24	29	22	1.99
12084155--12084183	14	2.0	15	93	6	51	51	20	0	27	1.47
12088490--12088687	71	2.8	70	92	3	294	33	17	28	20	1.95
12088556--12088673	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12088524--12088687	71	2.3	71	100	0	328	35	17	28	18	1.94
12093074--12093161	28	3.2	28	83	3	108	35	21	25	18	1.95
12096647--12096716	27	2.5	28	86	2	97	32	25	14	27	1.94
12096724--12096830	42	2.5	42	95	0	187	23	32	14	28	1.95
12099890--12099920	15	2.1	15	100	0	62	51	29	0	19	1.47
12103060--12103087	2	14.0	2	100	0	56	50	0	0	50	1.00
12103687--12103950	40	6.6	40	86	7	347	24	24	25	25	2.00
12110834--12110878	22	2.0	22	100	0	90	22	13	17	46	1.83
12112114--12112175	22	2.8	22	87	7	81	17	1	1	79	0.90
12112119--12112177	6	10.0	6	85	7	77	18	1	1	77	0.93
12112114--12112206	17	5.7	15	77	16	80	20	3	1	75	1.01
12112114--12112206	5	17.2	5	73	22	57	20	3	1	75	1.01
12112114--12112176	28	2.2	28	86	8	92	17	1	1	79	0.89
12112119--12112208	35	2.5	36	84	10	114	21	3	2	73	1.09
12112120--12112206	11	7.3	12	75	16	67	20	3	1	74	1.03
12112813--12112926	58	1.9	59	96	1	212	38	9	14	37	1.78
12115143--12115190	17	2.8	17	77	0	51	47	6	6	39	1.54
12125221--12125271	22	2.2	23	82	10	68	35	3	33	27	1.75
12125231--12125276	22	2.1	22	100	0	92	32	4	32	30	1.77
12125328--12125429	50	2.0	50	96	0	186	34	4	10	50	1.59
12128905--12128986	39	2.1	39	86	4	112	24	18	26	30	1.98
12132970--12133071	6	16.8	6	76	17	95	50	12	16	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12132970--12133071	30	3.4	29	87	6	141	50	12	16	20	1.78
12133207--12133262	27	2.1	27	83	6	69	35	23	25	16	1.94
12133427--12133485	22	2.7	22	81	0	64	32	22	25	20	1.98
12133573--12133655	27	3.1	26	87	5	112	37	21	21	19	1.94
12133854--12134022	27	6.3	27	82	4	180	26	19	18	35	1.95
12134034--12134195	27	6.0	27	82	2	209	40	10	22	27	1.86
12134034--12134224	81	2.4	81	86	1	249	38	10	23	28	1.87
12134015--12134183	54	3.1	54	78	7	200	40	10	20	27	1.86
12138381--12138411	11	2.8	11	100	0	62	29	0	0	70	0.87
12141985--12142152	40	4.2	40	80	4	169	23	27	23	25	2.00
12146146--12146267	37	3.3	37	97	0	226	21	33	19	25	1.97
12146369--12146583	49	4.4	49	95	0	340	28	33	9	28	1.89
12149211--12149432	29	7.7	29	97	0	417	23	32	17	26	1.96
12151520--12151641	37	3.3	37	95	0	208	22	32	18	26	1.97
12151743--12151957	49	4.4	49	94	0	340	28	33	9	28	1.89
12158085--12158125	20	2.0	22	85	9	59	31	4	14	48	1.65
12159946--12160045	39	2.4	43	81	14	154	28	27	12	33	1.92
12160046--12160161	40	2.9	40	87	5	137	31	20	17	30	1.95
12160573--12160637	29	2.3	29	81	7	71	30	24	1	43	1.64
12161560--12161629	35	2.0	35	88	0	104	40	8	22	28	1.84
12163564--12163616	26	2.0	26	85	7	72	20	16	22	39	1.92
12165331--12165406	29	2.6	29	85	0	98	27	17	32	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12168927--12169066	23	6.0	24	91	7	218	28	22	20	28	1.98
12169112--12169178	20	3.3	20	91	0	107	31	20	13	34	1.92
12176761--12176824	31	2.1	31	90	0	101	25	23	15	35	1.94
12177016--12177157	24	6.0	24	91	7	220	28	21	21	28	1.99
12177037--12177156	23	5.1	23	94	5	206	29	20	20	29	1.98
12177016--12177157	47	3.0	49	88	10	222	28	21	21	28	1.99
12177206--12177261	11	5.5	11	71	16	57	28	19	14	37	1.91
12177206--12177272	20	3.3	20	89	0	98	29	20	13	35	1.91
12177309--12177356	25	1.9	25	86	0	69	25	16	25	33	1.96
12178478--12178511	18	1.9	17	94	5	59	64	8	17	8	1.47
12181558--12181775	40	5.5	40	90	2	307	25	23	26	24	2.00
12197327--12197360	16	2.1	16	89	10	52	55	0	8	35	1.31
12197716--12197906	18	10.6	18	75	10	104	35	10	14	38	1.82
12197716--12197906	54	3.6	52	75	9	179	35	10	14	38	1.82
12197707--12197999	36	7.9	36	70	14	186	35	11	15	37	1.83
12197944--12197999	18	3.2	18	79	2	60	35	10	16	37	1.83
12202633--12202739	27	3.9	27	82	11	121	37	22	23	16	1.94
12202630--12202739	54	2.0	54	84	6	143	38	21	23	16	1.93
12203155--12203186	16	2.1	15	94	5	55	3	18	28	50	1.62
12210478--12210578	27	3.7	26	83	8	112	37	19	23	18	1.94
12210478--12210589	54	2.1	54	81	6	129	37	20	24	17	1.94
12213250--12213437	40	4.7	40	91	1	279	25	29	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12213230--12213441	80	2.7	79	88	3	318	26	28	21	23	1.99
12216348--12216400	16	3.2	16	82	17	65	43	0	0	56	0.99
12216356--12216398	2	23.5	2	82	17	58	44	0	0	55	0.99
12219657--12219911	40	6.5	40	88	3	340	25	27	23	22	2.00
12227746--12228002	40	6.5	40	88	2	324	25	28	22	22	1.99
12229739--12229882	18	8.0	18	73	11	98	35	13	14	36	1.85
12229741--12229877	54	2.5	55	79	9	147	35	13	14	36	1.85
12234514--12234766	55	4.7	55	80	8	251	22	26	16	33	1.96
12234559--12234758	108	1.8	110	88	4	307	24	26	17	32	1.97
12235352--12235416	31	2.1	31	91	0	103	50	26	1	21	1.57
12235706--12235767	31	2.0	31	96	0	115	27	12	14	45	1.82
12235765--12235804	19	2.1	19	100	0	80	35	20	10	35	1.86
12240302--12240326	9	2.8	9	100	0	50	36	20	0	44	1.52
12242084--12242114	16	1.9	16	93	0	53	35	22	0	41	1.54
12242081--12242120	20	2.0	20	85	0	53	37	22	0	40	1.54
12242307--12242559	55	4.8	53	78	9	234	21	25	17	35	1.95
12247300--12247517	40	5.5	40	90	2	325	24	27	23	24	2.00
12247755--12247783	14	2.0	15	93	6	51	51	20	0	27	1.47
12253820--12254016	48	4.1	48	74	6	175	24	23	22	29	1.99
12253831--12254012	96	1.9	96	83	2	240	24	22	22	30	1.99
12258151--12258282	29	4.6	29	92	0	201	27	15	32	24	1.96
12258151--12258339	87	2.2	86	80	5	202	24	16	33	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12265707--12265881	46	3.8	46	78	13	196	28	29	21	20	1.98
12265715--12265885	93	1.8	93	92	0	288	28	29	21	20	1.98
12272973--12273123	40	3.8	40	77	13	134	27	23	26	22	2.00
12273010--12273139	40	3.2	40	77	4	138	24	23	27	23	2.00
12277390--12277557	40	4.2	40	80	7	162	23	26	23	26	2.00
12277406--12277557	80	1.9	80	83	5	200	23	26	23	26	2.00
12282927--12282973	23	2.1	23	81	14	55	38	4	10	46	1.58
12290209--12290417	49	4.3	49	94	1	341	30	31	7	31	1.85
12293171--12293290	40	3.0	40	84	6	152	25	25	23	25	2.00
12294034--12294338	40	7.8	40	90	5	480	26	27	19	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318