genome.fa.s2.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  198  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62080787--62080823	16	2.2	17	86	13	51	35	0	2	62	1.10
62082594--62082643	18	2.7	19	75	6	57	32	8	10	50	1.65
62082679--62082739	18	3.4	18	79	0	77	40	4	14	39	1.68
62082666--62082739	36	2.1	36	92	0	121	40	5	14	39	1.69
62087653--62087695	17	2.4	18	76	7	52	23	0	41	34	1.55
62090390--62090512	10	12.7	9	69	15	59	31	4	2	60	1.30
62090390--62090481	29	3.1	29	76	14	73	28	4	3	64	1.28
62090466--62090525	19	3.1	19	74	13	59	38	5	0	56	1.21
62090398--62090518	19	6.2	20	68	14	72	32	4	1	61	1.27
62091072--62091631	117	4.5	126	86	4	712	36	17	17	28	1.93
62092934--62092969	18	2.0	18	100	0	72	44	5	5	44	1.50
62094925--62094977	21	2.5	21	87	0	79	5	22	47	24	1.73
62094925--62094984	21	2.9	21	80	9	68	6	21	45	26	1.77
62096219--62096490	48	5.7	48	79	7	257	30	17	24	27	1.97
62096219--62096490	96	2.8	95	83	2	321	30	17	24	27	1.97
62096219--62096490	144	1.9	144	86	1	393	30	17	24	27	1.97
62096361--62096543	96	1.9	96	81	4	224	28	18	27	25	1.98
62100683--62100736	28	1.9	28	85	14	76	14	24	44	16	1.85
62101327--62101362	15	2.4	15	90	0	63	22	22	33	22	1.97
62107068--62107492	48	8.8	48	79	2	404	28	18	26	26	1.98
62107068--62107492	96	4.4	96	81	2	467	28	18	26	26	1.98
62107068--62107424	144	2.5	144	85	0	464	28	17	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62112088--62112123	18	2.0	18	94	0	63	38	8	27	25	1.84
62113885--62113919	10	3.4	10	88	7	52	40	0	25	34	1.56
62113885--62113946	21	2.9	21	81	13	63	40	0	30	29	1.57
62113885--62113946	11	5.7	11	78	19	60	40	0	30	29	1.57
62117595--62117629	16	2.3	15	90	5	52	54	0	0	45	0.99
62118827--62118909	11	7.7	11	76	9	73	68	2	4	24	1.21
62118823--62118869	14	3.4	14	88	2	60	68	4	2	25	1.19
62118827--62118908	32	2.5	33	81	11	98	68	2	4	24	1.22
62126310--62126593	41	6.9	41	95	0	480	30	25	26	17	1.97
62126760--62126844	21	3.9	21	73	11	80	29	1	24	44	1.61
62126767--62126860	46	2.0	46	93	0	161	30	2	24	42	1.66
62128086--62128257	93	1.8	93	96	0	317	27	30	22	20	1.98
62128078--62128253	46	3.8	46	81	10	232	28	29	21	20	1.98
62135384--62135556	43	4.1	43	81	1	179	28	16	26	27	1.97
62136871--62136911	18	2.2	20	86	8	59	58	4	0	36	1.20
62136871--62136914	19	2.2	20	84	11	56	56	4	0	38	1.20
62151183--62151448	47	5.7	47	76	9	199	28	19	28	23	1.98
62151230--62151448	47	4.7	46	80	8	212	28	18	29	23	1.98
62151227--62151448	93	2.4	94	79	8	238	28	18	29	23	1.98
62153002--62153028	14	1.9	14	100	0	54	14	0	7	77	0.97
62153382--62153422	13	3.1	14	82	10	50	73	4	0	21	1.02
62158225--62158303	28	2.9	27	77	9	79	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62158240--62158305	27	2.6	25	76	9	69	62	0	0	37	0.96
62164697--62164728	2	16.0	2	100	0	64	50	0	0	50	1.00
62172870--62172918	23	2.1	23	100	0	98	20	4	24	51	1.65
62174354--62174393	20	2.0	20	85	0	53	57	5	0	37	1.21
62179133--62179194	24	2.6	24	84	0	70	30	27	6	35	1.82
62180809--62180844	17	2.1	18	90	10	58	41	5	0	52	1.24
62186418--62186458	14	3.0	14	80	16	50	53	0	0	46	1.00
62186694--62186744	20	2.5	20	75	25	54	45	1	9	43	1.48
62187597--62187623	2	13.5	2	100	0	54	51	0	0	48	1.00
62202641--62202685	24	1.9	24	95	4	83	60	13	0	26	1.34
62202718--62203291	69	8.3	69	76	2	391	35	21	19	23	1.96
62202718--62203252	138	3.9	137	75	5	447	34	21	19	23	1.96
62203305--62203512	58	3.6	59	81	6	248	34	17	9	38	1.83
62203321--62203571	113	2.2	114	81	10	271	33	17	10	38	1.83
62205655--62205879	50	4.5	50	77	8	224	25	18	26	29	1.98
62209003--62209045	22	2.0	22	90	0	68	37	16	27	18	1.92
62209004--62209051	22	2.2	22	84	0	60	37	16	25	20	1.93
62210186--62210266	35	2.2	36	89	6	128	37	11	13	38	1.80
62210178--62210266	19	4.8	19	89	8	148	37	10	14	38	1.80
62210558--62210592	18	2.0	17	88	5	52	31	0	0	68	0.90
62215692--62217414	859	2.0	860	96	0	3189	32	14	26	26	1.95
62219555--62219717	89	1.9	87	84	5	220	30	18	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62219750--62220199	78	5.8	78	91	1	695	32	18	23	24	1.97
62220228--62220376	44	3.4	44	81	0	181	32	14	26	26	1.95
62220913--62221010	35	2.7	37	87	12	150	37	10	16	35	1.82
62220913--62221003	19	4.9	19	92	8	161	37	10	15	36	1.83
62220913--62221026	19	5.8	22	87	10	96	36	9	15	37	1.81
62221293--62221327	18	2.0	17	88	5	52	31	0	0	68	0.90
62222799--62222837	20	2.0	20	100	0	78	30	10	10	48	1.70
62230650--62230696	22	2.1	21	84	11	58	27	21	31	19	1.97
62232360--62232747	50	7.7	50	75	6	354	29	23	17	28	1.97
62232363--62232750	151	2.6	150	91	0	623	29	23	17	28	1.97
62236083--62236249	40	4.2	40	82	2	185	24	26	22	26	2.00
62244100--62244266	40	4.2	40	82	2	185	24	26	22	26	2.00
62246499--62246557	15	3.9	15	93	4	84	50	13	22	13	1.76
62250058--62250448	50	7.8	50	75	5	344	29	23	19	27	1.98
62250061--62250448	151	2.6	149	89	0	569	30	23	19	27	1.98
62251896--62251926	15	2.1	15	100	0	62	6	38	25	29	1.81
62251890--62251928	15	2.8	13	82	14	51	5	46	23	25	1.73
62253143--62253417	48	5.8	48	76	3	259	23	29	19	27	1.98
62253144--62253427	96	3.0	96	80	2	320	24	28	18	27	1.98
62254636--62254695	5	11.2	5	76	13	57	38	1	25	35	1.66
62254641--62254695	22	2.5	22	87	0	83	38	1	25	34	1.67
62254631--62254695	22	2.6	25	74	18	73	38	1	26	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62254636--62254707	12	6.5	11	76	12	60	36	4	25	34	1.75
62262483--62262579	50	1.9	50	93	0	167	22	22	22	31	1.98
62267110--62267242	38	3.5	38	83	4	135	33	17	20	28	1.95
62272154--62272180	2	13.5	2	100	0	54	48	0	0	51	1.00
62273825--62273852	13	2.2	13	100	0	56	57	14	0	28	1.38
62277427--62277525	50	2.0	50	100	0	198	18	28	12	41	1.86
62279831--62279878	25	1.9	24	84	16	62	62	0	0	37	0.95
62280884--62280940	29	1.9	30	82	3	71	47	8	3	40	1.52
62289093--62289137	13	3.5	13	96	0	81	13	28	24	33	1.93
62292404--62292445	22	1.9	22	85	9	59	38	21	30	9	1.85
62293164--62293208	18	2.5	17	82	10	54	75	2	0	22	0.91
62293181--62293222	22	1.9	22	90	9	68	69	4	0	26	1.08
62312742--62312781	19	2.1	19	100	0	80	32	10	15	42	1.79
62315725--62315852	40	3.2	39	82	8	143	21	25	25	27	2.00
62315725--62315903	80	2.2	81	80	4	193	23	25	24	26	2.00
62337423--62337573	40	3.8	40	74	11	114	27	23	25	23	2.00
62337476--62337589	40	2.8	40	76	5	115	24	25	28	21	1.99
62344770--62344867	30	3.5	26	79	18	83	6	4	16	73	1.19
62344774--62344867	31	3.1	30	86	10	122	5	4	14	75	1.13
62345683--62345744	30	2.1	30	90	6	99	41	29	9	19	1.83
62345767--62345933	85	1.9	89	79	9	175	38	17	17	26	1.92
62345864--62346762	71	11.8	72	71	16	524	32	20	18	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62345888--62346762	230	3.8	221	78	15	660	32	20	18	28	1.96
62346309--62346479	86	2.0	84	86	8	240	35	19	18	26	1.95
62346081--62346989	313	3.0	312	80	14	979	34	20	17	27	1.95
62346400--62346535	70	1.9	70	88	7	186	27	22	19	30	1.98
62346536--62346570	14	2.5	14	90	0	52	57	5	20	17	1.60
62346554--62346989	70	6.2	71	73	14	336	36	21	17	24	1.95
62346550--62346982	71	6.2	70	72	15	324	35	21	17	24	1.95
62346989--62347252	70	3.7	71	84	4	356	37	22	14	25	1.92
62346989--62347252	71	3.7	69	84	4	339	37	22	14	25	1.92
62346828--62347418	256	2.3	255	94	2	1020	36	22	14	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318