Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  179  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55506491--55506556
28
2.4
28
86
0
87
46
16
9
27
1.77
55510286--55510324
16
2.4
16
87
8
53
15
0
5
79
0.90
55514581--55514608
2
14.0
2
100
0
56
50
0
0
50
1.00
55515316--55515493
80
2.2
80
84
4
225
26
23
25
24
2.00
55515314--55515493
40
4.5
40
80
7
179
26
23
25
24
2.00
55515436--55515519
40
2.1
40
82
4
98
26
27
26
20
1.99
55515350--55515532
80
2.3
79
77
8
183
28
22
24
23
1.99
55523333--55523512
40
4.5
40
82
6
204
26
23
26
24
2.00
55523335--55523512
79
2.2
81
85
4
236
25
23
26
24
2.00
55523369--55523552
79
2.3
79
81
4
199
28
23
25
23
2.00
55525644--55525746
40
2.6
40
83
6
122
31
21
25
22
1.98
55525685--55525793
38
2.8
38
84
8
130
28
20
28
22
1.99
55533643--55533813
40
4.3
39
77
10
159
28
21
26
23
1.99
55536798--55536870
29
2.5
29
93
0
101
26
31
16
26
1.96
55541044--55541104
28
2.2
28
93
0
104
16
22
45
14
1.84
55545947--55546005
17
3.5
16
81
6
55
74
3
5
16
1.13
55545957--55546009
6
8.8
6
77
8
54
77
3
3
15
1.06
55547493--55547539
21
2.1
21
84
7
58
10
17
44
27
1.81
55555945--55556341
47
8.3
47
94
2
623
29
30
8
31
1.87
55555995--55556073
25
3.3
25
66
16
67
31
30
5
32
1.79
55555945--55556341
143
2.8
143
93
1
654
29
30
8
31
1.87
55557643--55557686
2
22.0
2
100
0
88
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55563467--55563594
49
2.6
49
83
2
159
28
21
28
21
1.99
55564126--55564176
3
18.0
3
77
18
56
62
1
0
35
1.06
55565089--55565141
6
8.8
6
95
0
97
18
16
15
49
1.80
55571392--55571416
9
2.8
9
100
0
50
24
24
0
52
1.48
55577599--55577699
45
2.2
45
96
0
193
22
17
30
28
1.97
55577919--55578037
56
2.1
56
96
0
220
39
8
21
31
1.83
55581103--55581161
31
1.9
31
82
6
75
77
1
15
5
1.01
55587414--55587466
24
2.3
23
93
3
88
56
0
0
43
0.99
55587750--55587782
14
2.3
15
89
5
50
57
12
0
30
1.35
55591077--55591206
40
3.3
39
81
4
154
23
28
24
23
2.00
55598396--55598433
19
2.0
19
89
0
58
34
10
0
55
1.34
55598681--55598737
7
8.4
7
78
18
50
38
0
0
61
0.96
55599909--55600055
48
3.1
42
72
18
105
65
2
24
6
1.30
55601674--55601700
9
3.0
9
100
0
54
33
22
11
33
1.89
55603725--55603807
43
1.9
43
90
0
130
24
25
1
49
1.58
55615076--55615255
40
4.5
40
82
6
204
26
23
25
24
2.00
55615078--55615255
79
2.2
81
85
4
236
25
24
25
24
2.00
55615198--55615281
40
2.1
40
82
4
98
26
27
26
20
1.99
55623104--55623256
40
3.8
40
80
4
173
26
22
25
25
2.00
55623106--55623274
40
4.2
39
77
8
151
27
22
25
24
2.00
55633728--55633837
34
3.2
34
84
2
132
35
21
18
24
1.95
55635416--55635466
18
2.8
18
93
3
84
49
17
0
33
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55641167--55641244
40
2.0
40
94
0
138
21
19
29
29
1.98
55643947--55644127
40
4.5
40
82
6
190
35
25
16
22
1.95
55643947--55644120
80
2.1
82
85
2
235
35
26
16
21
1.95
55644621--55644659
21
1.9
20
84
5
51
48
25
0
25
1.51
55645530--55645590
30
2.0
30
100
0
122
19
18
13
49
1.79
55651930--55651997
27
2.5
27
100
0
136
36
32
11
19
1.88
55654886--55654979
44
2.1
44
86
7
127
35
26
4
34
1.76
55654961--55655015
16
3.4
16
90
5
76
29
23
9
38
1.85
55677905--55677977
29
2.5
29
93
0
101
26
31
16
26
1.96
55692505--55692605
28
3.5
28
86
6
114
29
26
13
29
1.94
55702261--55702301
19
2.2
19
86
8
57
60
0
2
36
1.10
55702241--55702301
9
6.1
9
75
20
59
60
1
3
34
1.23
55702893--55702949
24
2.4
24
85
5
71
70
0
22
7
1.11
55714310--55714471
39
4.2
39
91
2
254
22
20
32
24
1.98
55714327--55714507
39
4.6
40
87
1
154
22
22
32
22
1.98
55722203--55722365
39
4.2
39
91
0
245
23
20
31
23
1.98
55722223--55722401
39
4.6
40
87
0
148
22
21
32
22
1.98
55725438--55725470
17
2.1
16
88
11
50
69
0
12
18
1.18
55725438--55725495
27
2.2
26
80
17
66
72
0
8
18
1.10
55725463--55725495
17
1.9
17
93
0
57
75
0
6
18
1.00
55726429--55726459
2
15.5
2
100
0
62
51
0
0
48
1.00
55731618--55731720
29
3.6
29
87
0
143
25
33
15
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55733633--55733657
6
4.2
6
100
0
50
84
0
0
16
0.63
55739801--55739855
29
1.9
28
82
10
67
34
7
5
52
1.52
55746977--55747139
29
5.6
29
88
1
202
28
26
15
29
1.96
55750472--55750652
46
3.9
46
81
9
233
20
21
29
27
1.98
55750474--55750644
93
1.8
93
96
0
315
20
22
29
27
1.98
55753617--55753696
15
5.4
15
77
7
83
10
18
13
57
1.64
55753608--55753695
30
3.0
30
80
11
92
10
18
15
55
1.68
55757361--55757570
40
5.2
40
87
2
305
25
24
28
21
1.99
55765497--55765706
40
5.2
40
87
2
305
25
24
28
21
1.99
55767533--55767713
46
3.9
46
81
9
233
20
21
29
27
1.98
55767535--55767705
93
1.8
93
96
0
315
20
22
29
27
1.98
55769718--55769758
20
2.0
20
95
0
73
34
9
19
36
1.85
55769721--55769764
20
2.2
20
87
0
61
34
4
18
43
1.70
55774535--55774564
16
1.9
15
93
6
51
26
0
3
70
1.03
55778723--55778781
31
1.9
31
93
6
102
15
30
35
18
1.92
55780682--55781215
47
11.4
47
92
0
881
28
31
8
32
1.87
55783971--55784042
29
2.5
28
84
4
81
31
33
13
20
1.92
55791217--55791304
43
2.0
43
82
4
106
28
29
18
23
1.98
55791928--55791998
25
2.9
25
85
2
90
45
19
9
25
1.81
55793491--55793520
16
1.9
16
93
6
53
50
20
0
30
1.49
55801980--55802097
43
2.8
43
73
11
109
26
17
22
33
1.96
55805592--55805654
28
2.2
28
94
0
108
28
26
11
33
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55811779--55811816
20
1.9
20
94
0
67
36
13
26
23
1.91
55818759--55818937
80
2.2
81
84
3
227
25
25
23
26
2.00
55818759--55818939
40
4.5
40
79
4
186
25
24
23
26
2.00
55819647--55819688
2
21.0
2
100
0
84
50
0
0
50
1.00
55822788--55822857
33
2.2
33
86
2
97
37
20
8
34
1.83
55837836--55837860
9
2.8
9
100
0
50
52
0
24
24
1.48
55838193--55838310
42
2.8
42
73
8
114
29
21
22
27
1.99
55846432--55846599
40
4.2
40
77
3
158
25
28
21
25
1.99
55854408--55854559
40
3.8
40
83
5
164
23
28
22
26
1.99
55857476--55857596
47
2.6
47
80
8
140
28
16
30
23
1.96
55861752--55861853
26
3.9
26
79
7
91
45
24
13
16
1.84
55863333--55863402
27
2.5
28
86
2
97
32
25
14
27
1.94
55863410--55863515
42
2.5
42
95
1
187
22
33
15
29
1.94
55865537--55865565
8
3.6
8
100
0
58
10
24
10
55
1.65
55869213--55869354
40
3.5
40
83
1
124
27
23
26
21
1.99
55869251--55869380
40
3.2
40
82
2
163
23
23
27
25
2.00
55875842--55876037
40
4.9
40
87
5
272
25
28
22
24
2.00
55875842--55876037
80
2.5
80
88
3
304
25
28
22
24
2.00
55877101--55877139
20
2.1
19
90
9
62
76
0
15
7
0.99
55878468--55878539
29
2.5
29
91
6
112
29
13
27
29
1.95
55884934--55884974
22
2.0
21
86
13
59
78
0
14
7
0.96
55886279--55886379
28
3.5
28
86
6
114
28
13
27
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55886308--55886379
29
2.5
28
91
6
110
29
13
27
29
1.95
55893902--55894000
28
3.5
29
83
6
114
30
27
15
27
1.96
55901913--55901986
28
2.6
28
91
4
114
31
25
14
28
1.95
55907772--55907839
27
2.5
28
95
2
120
27
11
26
33
1.91
55913142--55913170
2
14.5
2
100
0
58
51
0
0
48
1.00
55919820--55919858
20
2.0
20
95
5
71
41
5
2
51
1.38
55923418--55923742
48
6.7
48
82
0
380
23
28
20
27
1.99
55923418--55923742
96
3.4
96
90
1
481
23
28
20
27
1.99
55925217--55925279
31
2.0
31
96
0
117
26
4
19
49
1.68
55928183--55928310
70
1.9
67
90
4
202
19
25
6
48
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318