genome.fa.s2.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  182  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56801768--56801794	14	1.9	14	100	0	54	14	3	7	74	1.18
56801746--56801798	25	2.2	24	82	3	61	16	1	5	75	1.08
56806094--56806153	26	2.3	26	100	0	120	48	3	6	41	1.46
56806286--56806310	5	5.0	5	100	0	50	80	0	0	20	0.72
56807694--56807808	29	4.0	29	82	8	130	29	29	13	26	1.95
56809339--56809378	16	2.5	16	95	0	71	10	5	32	52	1.56
56818360--56818501	40	3.5	40	82	1	124	27	24	26	21	1.99
56818398--56818527	40	3.3	39	78	11	147	23	24	26	24	2.00
56826269--56826617	47	7.3	48	91	2	483	30	8	31	28	1.88
56844823--56844919	44	2.2	44	83	3	115	29	24	18	26	1.98
56844884--56845341	177	2.6	176	86	1	601	28	24	18	28	1.98
56846933--56847123	39	4.9	39	95	0	319	24	23	31	20	1.98
56848554--56848893	177	1.9	177	86	0	482	29	25	15	29	1.96
56851602--56851797	40	4.9	40	84	5	245	26	27	21	24	2.00
56851602--56851791	80	2.4	80	89	1	274	26	27	22	23	1.99
56859132--56859233	29	3.6	27	77	6	96	28	31	16	23	1.96
56860541--56860579	20	2.1	19	86	13	55	7	15	0	76	0.99
56866005--56866134	40	3.3	39	76	8	136	23	27	23	24	2.00
56866021--56866171	40	3.8	40	78	6	146	22	26	23	27	1.99
56866021--56866169	80	1.9	79	83	6	194	22	26	23	27	1.99
56872015--56872187	40	4.4	39	75	7	136	27	22	27	22	1.99
56876689--56876999	39	8.0	39	93	0	496	21	26	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56888685--56888725	21	2.0	21	100	0	82	29	19	12	39	1.88
56890637--56890674	17	2.2	17	95	0	67	18	42	7	31	1.79
56896539--56896623	42	2.0	42	100	0	170	60	9	16	14	1.59
56899301--56899353	26	2.0	26	100	0	106	33	3	26	35	1.75
56899880--56899911	2	16.0	2	100	0	64	0	50	0	50	1.00
56901612--56901791	40	4.5	40	78	7	177	26	23	25	24	2.00
56901614--56901791	80	2.2	81	80	3	198	26	23	25	24	2.00
56901734--56901817	40	2.1	40	82	4	98	26	27	26	20	1.99
56901647--56901817	80	2.1	80	78	2	173	28	24	24	22	2.00
56903197--56903235	2	19.5	2	100	0	78	0	51	0	48	1.00
56903891--56903933	21	2.1	20	91	4	68	20	4	16	58	1.56
56904747--56904802	22	2.5	22	100	0	112	35	8	16	39	1.80
56907969--56908149	40	4.5	40	88	1	256	24	22	28	24	1.99
56907965--56908149	80	2.3	80	89	1	282	24	22	28	24	1.99
56914409--56914591	40	4.6	39	85	7	210	25	21	26	25	2.00
56914409--56914626	80	2.8	80	79	12	236	26	21	26	25	1.99
56921684--56921833	40	3.8	40	84	6	164	28	22	24	25	1.99
56921652--56921835	80	2.3	81	80	10	227	26	21	26	25	2.00
56921652--56921868	80	2.7	80	76	16	220	26	21	26	25	2.00
56932989--56933118	43	3.1	42	78	8	147	17	16	12	53	1.72
56938640--56938675	18	2.1	18	90	10	58	27	0	0	72	0.85
56939259--56939315	27	2.1	27	87	6	80	22	28	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56947869--56948225	180	2.0	180	86	2	502	32	18	8	40	1.81
56948791--56949127	50	6.7	50	84	0	422	29	26	16	26	1.97
56957115--56957592	48	9.9	48	79	4	467	28	17	27	26	1.98
56957115--56957592	146	3.3	146	91	1	780	28	17	27	26	1.98
56959675--56959706	16	2.0	16	93	0	55	34	18	0	46	1.49
56959909--56960301	151	2.6	151	88	0	599	31	23	17	26	1.97
56959909--56960299	101	3.9	101	74	6	256	31	23	17	26	1.97
56959908--56960300	50	7.8	50	77	3	349	31	23	17	26	1.97
56968031--56968193	39	4.2	39	91	0	263	23	33	20	22	1.97
56975912--56976074	39	4.2	39	91	0	263	23	33	20	22	1.97
56979131--56979155	12	2.1	12	100	0	50	16	8	40	36	1.77
56979782--56980259	48	9.9	48	76	9	434	29	19	26	24	1.98
56979792--56980261	98	4.8	98	78	6	465	29	19	26	24	1.98
56979782--56980259	146	3.3	145	90	1	733	29	19	26	24	1.98
56980883--56980925	21	1.9	24	86	13	65	18	4	34	41	1.71
56988162--56988186	13	1.9	13	100	0	50	64	8	8	20	1.46
56988331--56988381	25	2.0	25	96	0	93	43	11	29	15	1.82
56997652--56997743	44	2.1	44	83	4	114	36	22	19	20	1.95
56999250--56999321	5	14.4	5	100	0	144	40	0	0	59	0.97
56999390--56999425	11	3.1	12	88	8	56	72	0	27	0	0.85
56999355--56999416	30	2.0	33	84	9	85	69	4	24	1	1.17
57000238--57000372	40	3.4	40	72	9	125	24	17	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57000539--57000569	14	2.1	15	94	5	55	41	0	19	38	1.51
57003400--57003526	27	4.7	27	83	1	146	18	24	22	34	1.96
57005634--57005801	47	3.6	47	76	16	195	30	29	17	21	1.96
57005588--57005850	93	2.8	93	94	0	445	29	29	19	21	1.98
57005579--57005847	46	5.8	46	74	16	259	29	28	19	21	1.98
57012732--57012941	45	4.7	43	76	13	194	29	30	20	20	1.97
57012732--57012941	88	2.3	88	91	4	323	29	30	20	20	1.97
57012874--57012941	20	3.3	20	71	15	66	29	30	20	19	1.97
57014946--57015016	37	1.9	37	94	0	124	25	32	19	22	1.98
57015149--57015445	48	6.2	48	92	0	497	31	25	6	36	1.81
57015149--57015433	143	2.0	143	94	0	498	30	25	6	36	1.82
57018845--57019031	58	3.3	57	86	6	249	29	29	17	23	1.97
57018848--57019006	29	5.5	29	71	12	114	29	28	18	22	1.98
57019175--57019384	43	4.9	43	95	0	384	32	32	23	11	1.90
57021078--57021220	37	3.9	37	95	1	245	25	32	18	23	1.97
57021353--57021649	48	6.2	48	93	0	497	31	25	6	36	1.81
57021353--57021649	143	2.1	144	92	0	497	31	25	6	36	1.81
57022812--57022838	2	13.5	2	100	0	54	51	0	0	48	1.00
57027532--57027699	40	4.2	40	82	1	176	24	27	22	25	2.00
57028448--57028569	61	2.0	61	100	0	244	37	21	14	26	1.92
57042317--57042343	13	2.1	13	100	0	54	14	33	37	14	1.88
57051025--57051133	39	2.8	40	88	4	150	27	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57050987--57051149	40	4.1	40	80	7	179	25	20	28	25	1.99
57057976--57058126	40	3.8	40	77	13	134	27	23	26	22	2.00
57058013--57058142	40	3.2	40	77	4	138	24	23	27	23	2.00
57062301--57062464	40	4.1	40	79	6	179	25	21	28	25	1.99
57068279--57068462	40	4.6	40	82	4	174	28	22	26	23	1.99
57076390--57076573	40	4.6	40	82	4	174	28	22	26	23	1.99
57081818--57081981	40	4.1	40	80	7	181	25	20	27	26	1.99
57089465--57089658	47	4.1	47	89	0	280	33	10	29	26	1.90
57089489--57089565	22	3.4	22	66	22	59	35	12	28	23	1.92
57089539--57089614	23	3.2	25	62	24	63	28	13	34	23	1.92
57089628--57089762	52	2.7	52	85	10	192	36	7	25	31	1.83
57089911--57090001	37	2.5	37	98	0	173	23	20	31	24	1.98
57092013--57092209	25	7.9	24	75	9	139	26	18	21	33	1.96
57092033--57092170	74	1.9	74	89	0	213	26	16	21	34	1.95
57092539--57092567	15	1.9	15	100	0	58	55	13	17	13	1.70
57094540--57094578	16	2.5	16	87	4	53	5	23	2	69	1.21
57094628--57094684	16	3.6	16	74	11	55	43	1	0	54	1.10
57096176--57096301	40	3.2	39	80	6	139	22	25	23	28	1.99
57096115--57096301	80	2.3	80	78	12	204	23	27	23	25	2.00
57102309--57102377	6	11.8	6	80	6	79	78	2	2	15	1.00
57102314--57102363	17	2.9	17	93	3	82	82	2	2	14	0.86
57102292--57102374	12	7.9	10	70	16	53	75	2	3	18	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57102291--57102377	17	5.1	16	78	13	59	75	2	3	18	1.04
57102291--57102374	23	3.7	23	79	7	82	76	2	3	17	1.04
57105237--57105291	27	2.0	27	100	0	110	14	29	30	25	1.95
57112542--57112717	46	3.8	46	80	12	225	21	21	28	28	1.98
57112539--57112709	93	1.8	93	96	0	315	21	21	29	28	1.98
57115664--57115743	15	5.4	15	77	7	83	10	18	13	57	1.64
57115655--57115742	30	3.0	30	80	11	92	10	18	15	55	1.68
57117662--57117837	46	3.8	46	80	12	225	21	21	28	28	1.98
57117659--57117829	93	1.8	93	96	0	315	21	21	29	28	1.98
57125973--57126110	49	2.8	49	72	2	116	28	26	14	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318