Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  196  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61506571--61506615
19
2.3
19
84
3
54
40
8
0
51
1.33
61506627--61506658
14
2.3
14
94
0
55
46
0
0
53
1.00
61511776--61511891
42
2.8
42
84
2
126
28
16
25
29
1.97
61513542--61513780
55
4.5
53
79
9
256
37
17
24
20
1.94
61513549--61513749
108
1.8
110
88
4
309
35
16
25
22
1.95
61513988--61514018
16
1.9
16
93
0
53
41
0
22
35
1.54
61518235--61518406
93
1.8
93
96
0
317
27
30
22
20
1.98
61518227--61518402
46
3.8
46
81
10
232
28
29
21
20
1.98
61520786--61520874
30
3.0
30
80
8
101
57
15
16
10
1.65
61520786--61520865
15
5.4
15
80
7
92
58
13
17
10
1.62
61520797--61520874
15
5.2
15
78
9
79
56
15
16
11
1.67
61526326--61526414
30
3.0
30
80
8
101
57
15
16
10
1.65
61526326--61526405
15
5.4
15
80
7
92
58
13
17
10
1.62
61526337--61526414
15
5.2
15
78
9
79
56
15
16
11
1.67
61529360--61529531
93
1.8
93
96
0
317
27
30
22
20
1.98
61529352--61529527
46
3.8
46
81
10
232
28
29
21
20
1.98
61531495--61531642
80
1.9
79
81
4
181
22
30
25
21
1.99
61531536--61531685
40
3.8
40
77
8
144
22
27
24
26
2.00
61535182--61535270
30
3.0
30
80
8
101
57
15
16
10
1.65
61535182--61535261
15
5.4
15
80
7
92
58
13
17
10
1.62
61535193--61535270
15
5.2
15
78
9
79
56
15
16
11
1.67
61538207--61538378
93
1.8
93
96
0
317
27
30
22
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61538199--61538374
46
3.8
46
81
10
232
28
29
21
20
1.98
61540752--61540839
29
3.0
29
80
8
97
56
15
17
10
1.66
61540752--61540830
15
5.4
15
77
10
83
58
13
17
10
1.63
61540763--61540839
15
5.2
15
75
9
77
55
15
16
11
1.68
61546293--61546381
30
3.0
30
80
8
101
57
15
16
10
1.65
61546293--61546372
15
5.4
15
80
7
92
58
13
17
10
1.62
61546304--61546381
15
5.2
15
78
9
79
56
15
16
11
1.67
61549332--61549503
93
1.8
93
96
0
317
27
30
22
20
1.98
61549324--61549499
46
3.8
46
81
10
232
28
29
21
20
1.98
61554989--61555235
55
4.7
53
80
8
254
36
17
25
21
1.95
61554996--61555196
108
1.8
110
88
4
309
34
17
25
22
1.96
61555435--61555465
16
1.9
16
93
0
53
41
0
22
35
1.54
61558771--61558885
38
3.0
37
92
5
185
19
21
26
33
1.97
61558883--61559147
45
5.9
45
91
0
397
21
21
28
28
1.99
61558883--61559190
135
2.3
135
85
4
410
23
21
28
26
1.99
61558883--61559190
90
3.4
89
89
3
406
23
21
28
26
1.99
61569043--61569258
48
4.6
48
76
8
176
26
16
28
29
1.97
61577344--61577405
32
1.9
32
83
0
79
33
9
14
41
1.79
61580507--61580634
26
4.9
26
96
0
220
31
5
26
36
1.79
61582074--61582148
26
2.8
26
85
4
87
34
21
12
32
1.90
61582252--61582363
27
4.1
27
90
1
161
19
24
22
33
1.97
61582252--61582391
54
2.6
55
85
4
169
20
22
22
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61582252--61582384
27
4.9
27
87
9
139
20
23
21
34
1.97
61584772--61584826
16
3.4
16
80
5
67
38
9
23
29
1.85
61585128--61585179
21
2.4
22
84
12
63
61
1
0
36
1.07
61596430--61596456
6
4.5
6
100
0
54
48
0
33
18
1.49
61597008--61597058
22
2.4
22
83
3
68
17
41
29
11
1.85
61598932--61599103
46
3.7
46
82
4
211
27
20
29
23
1.99
61598932--61599143
46
4.6
46
77
11
195
27
19
28
23
1.98
61600294--61600332
21
1.9
21
89
5
62
10
33
33
23
1.88
61604628--61604671
18
2.3
20
88
7
65
31
0
4
63
1.14
61610916--61610963
25
1.9
25
100
0
96
31
20
20
27
1.98
61612951--61613048
27
3.6
27
74
10
83
22
32
21
23
1.98
61614681--61614992
46
6.6
48
73
12
229
23
28
19
28
1.98
61614682--61614992
94
3.3
93
77
11
296
23
28
19
28
1.98
61614682--61614997
140
2.2
141
79
8
349
23
28
19
28
1.98
61626640--61626701
27
2.2
29
77
11
67
50
3
3
43
1.34
61626796--61626865
33
2.1
35
84
10
92
61
1
4
32
1.24
61628431--61628952
44
11.9
44
88
0
767
26
28
14
30
1.95
61640849--61640910
27
2.2
29
77
11
67
50
3
3
43
1.34
61641039--61641114
10
7.5
10
71
17
50
61
0
3
34
1.14
61641016--61641080
18
3.8
18
70
24
50
61
0
4
33
1.16
61641055--61641128
34
2.2
32
83
9
85
58
0
5
36
1.21
61641072--61641113
19
2.1
19
86
13
57
57
0
4
38
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61655015--61655217
40
5.1
40
92
2
302
22
23
28
26
1.99
61660903--61661114
102
2.1
102
87
0
298
30
26
21
21
1.99
61661792--61661877
35
2.5
35
86
1
120
30
24
16
29
1.96
61661975--61662013
16
2.4
17
95
4
71
20
33
5
41
1.74
61667432--61667484
18
2.9
18
86
10
72
60
0
0
39
0.97
61667438--61667493
18
3.2
18
83
11
55
62
1
0
35
1.06
61669351--61669426
37
2.1
37
95
5
136
38
18
10
32
1.85
61669904--61670068
87
1.9
86
86
3
233
36
21
14
27
1.92
61671055--61671345
138
2.1
138
85
1
395
37
15
21
25
1.92
61671461--61671531
34
2.1
34
84
5
90
49
15
9
25
1.75
61671825--61672004
28
6.6
28
73
14
108
55
8
15
21
1.66
61671956--61672039
28
3.0
27
82
3
87
55
4
17
21
1.60
61672692--61672746
16
3.2
16
80
10
56
69
0
25
5
1.10
61673593--61673634
21
2.0
21
86
9
59
35
2
0
61
1.09
61680511--61680588
38
2.1
38
80
9
88
37
16
17
28
1.92
61682285--61682414
46
2.8
47
84
1
172
33
29
15
22
1.94
61684051--61684153
34
3.0
34
97
0
188
48
10
10
30
1.72
61687636--61687682
22
2.2
22
85
11
62
6
21
2
70
1.20
61704112--61704141
3
10.0
3
100
0
60
33
0
0
66
0.92
61710753--61710809
28
2.0
28
100
0
114
21
17
21
40
1.92
61710963--61711029
33
2.0
33
94
0
116
25
13
20
40
1.89
61724638--61724662
5
5.0
5
100
0
50
20
0
0
80
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61727283--61727324
21
2.0
21
100
0
84
33
14
0
52
1.42
61731796--61731834
21
1.9
20
84
5
51
56
0
2
41
1.13
61737674--61737722
21
2.3
20
80
13
53
63
4
4
28
1.31
61738141--61738183
19
2.2
20
87
4
61
32
0
0
67
0.91
61738478--61738503
12
2.2
12
100
0
52
19
15
7
57
1.62
61740645--61740750
23
4.5
23
77
12
108
19
21
19
38
1.93
61740635--61740734
47
2.1
46
85
3
128
18
22
20
40
1.92
61744425--61744473
8
6.1
8
95
0
80
12
0
16
71
1.14
61747417--61747480
21
3.1
21
67
24
64
45
15
12
26
1.82
61747400--61747480
40
2.0
40
100
0
162
43
14
12
29
1.82
61751916--61752328
48
8.8
45
74
9
303
27
20
27
24
1.99
61751966--61752324
91
3.8
93
80
6
388
27
20
27
24
1.99
61753487--61753620
35
3.8
35
88
0
160
35
22
12
29
1.91
61767948--61768008
9
7.0
8
74
17
50
31
0
1
67
1.01
61768023--61768087
25
2.6
26
83
11
82
30
1
1
66
1.10
61768423--61768517
46
2.1
46
93
0
163
36
13
17
31
1.89
61768984--61769037
21
2.6
21
80
8
58
53
1
1
42
1.22
61768985--61769047
30
2.0
31
81
6
74
52
3
1
42
1.27
61770587--61770624
20
1.9
20
88
0
58
21
23
2
52
1.59
61772471--61772505
18
1.9
18
88
0
52
22
2
8
65
1.34
61772572--61772612
18
2.3
18
86
0
55
51
4
0
43
1.23
61776394--61776430
12
3.2
12
77
14
51
29
5
5
59
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61776573--61776607
15
2.3
15
100
0
70
71
5
0
22
1.07
61779225--61779454
47
5.1
47
74
16
229
38
7
1
52
1.41
61779271--61779452
83
2.2
83
91
5
285
39
8
1
51
1.40
61779218--61779453
130
1.8
130
87
5
352
38
7
2
51
1.42
61779427--61779476
24
2.1
24
85
7
66
38
2
6
54
1.37
61786629--61786755
51
2.5
50
91
2
200
29
5
7
58
1.47
61791812--61791836
2
12.5
2
100
0
50
52
0
0
48
1.00
61796429--61796472
2
22.0
2
100
0
88
50
0
0
50
1.00
61796623--61796659
18
2.1
18
94
0
65
67
0
32
0
0.91
61798731--61798879
80
1.9
80
81
2
183
22
30
24
22
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318