genome.fa.s2.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  120  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36813240--36813404	39	4.2	39	92	0	267	23	20	32	24	1.98
36813240--36813435	39	5.0	39	89	0	257	22	21	32	23	1.98
36815411--36815483	29	2.5	29	100	0	146	28	15	28	27	1.96
36815574--36815602	2	14.5	2	100	0	58	48	0	0	51	1.00
36822295--36822421	68	1.9	66	84	7	168	21	29	15	33	1.94
36828929--36828984	18	3.1	18	84	0	85	28	21	0	50	1.49
36832682--36832731	21	2.4	21	83	3	57	14	16	26	44	1.85
36833837--36833861	13	1.9	13	100	0	50	40	12	16	32	1.84
36834757--36834795	19	2.1	19	85	0	51	71	7	5	15	1.26
36835259--36835348	27	3.2	27	81	7	101	32	24	24	18	1.97
36835454--36835517	28	2.3	28	91	5	103	29	7	29	32	1.86
36838387--36838426	21	1.9	21	89	0	62	65	5	7	22	1.38
36839348--36839429	36	2.2	36	86	2	110	13	15	32	37	1.87
36841388--36841429	21	2.0	20	82	13	50	45	19	9	26	1.80
36845480--36845651	93	1.8	93	96	0	317	27	29	21	20	1.98
36845473--36845648	46	3.8	46	79	12	216	28	29	21	20	1.98
36848034--36848122	30	3.0	30	80	8	101	57	15	16	10	1.65
36848034--36848113	15	5.4	15	80	7	92	58	13	17	10	1.62
36848045--36848122	15	5.2	15	78	9	79	56	15	16	11	1.67
36851075--36851246	93	1.8	93	94	0	308	27	29	21	21	1.99
36851068--36851243	46	3.8	46	79	12	207	28	28	21	21	1.98
36851117--36851255	47	3.0	46	75	16	144	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36853634--36853742	54	2.0	54	100	0	218	46	9	3	40	1.53
36861222--36861351	29	4.5	29	87	6	174	32	13	25	28	1.94
36862731--36862834	29	3.6	29	92	3	158	32	14	25	27	1.94
36864224--36864327	29	3.6	29	92	3	158	32	14	25	27	1.94
36865717--36865820	29	3.6	29	92	3	158	32	14	25	27	1.94
36867210--36867313	29	3.6	29	92	3	158	32	14	25	27	1.94
36868703--36868805	28	3.6	29	89	6	149	33	14	24	28	1.94
36870195--36870298	29	3.6	29	90	3	158	32	13	25	28	1.93
36874241--36874391	40	3.8	40	77	13	134	27	23	26	22	2.00
36874278--36874407	40	3.2	40	77	4	138	24	23	27	23	2.00
36882255--36882438	40	4.6	39	75	6	138	26	23	27	22	2.00
36882295--36882483	80	2.4	81	77	4	186	23	24	29	22	1.99
36883987--36884076	37	2.4	37	86	0	117	33	25	16	24	1.96
36893609--36893778	48	3.6	47	78	7	166	25	27	18	28	1.98
36893509--36893680	93	1.9	94	83	4	233	23	29	21	25	1.99
36893609--36893779	94	1.8	94	84	2	236	25	28	18	28	1.98
36900095--36900279	40	4.6	40	93	1	309	23	21	29	26	1.99
36902040--36902202	39	4.2	39	91	0	263	23	33	20	22	1.97
36909969--36910131	39	4.2	39	91	0	263	23	33	20	22	1.97
36917190--36917285	40	2.4	40	94	0	165	23	21	30	23	1.99
36924135--36924192	26	2.2	27	84	3	73	32	6	3	56	1.42
36935238--36935515	96	2.9	95	89	1	396	28	21	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36935243--36935515	144	1.9	144	84	3	370	28	21	27	21	1.99
36935243--36935567	144	2.3	143	82	2	364	29	21	26	22	1.99
36935238--36935566	96	3.4	96	85	0	392	29	20	26	23	1.99
36935246--36935567	48	6.7	48	76	4	283	29	20	26	22	1.99
36938252--36938294	20	2.2	20	83	8	52	46	2	20	30	1.63
36940063--36940401	123	2.8	123	96	0	606	30	10	25	33	1.90
36940370--36940613	40	6.1	40	88	1	301	24	21	26	27	1.99
36946632--36946970	123	2.8	123	96	0	606	30	10	25	33	1.90
36946939--36947142	40	5.1	40	87	0	237	24	21	26	26	1.99
36954359--36954655	40	7.4	40	87	3	357	28	22	25	23	1.99
36954356--36954695	159	2.1	159	78	3	353	28	22	25	23	1.99
36962526--36962666	40	3.5	40	82	8	153	26	24	24	24	2.00
36968288--36968326	19	2.1	19	100	0	78	30	25	10	33	1.89
36972311--36972434	44	2.9	42	80	12	144	33	25	15	25	1.95
36976113--36976195	37	2.2	37	91	0	130	20	32	22	24	1.98
36976313--36976797	47	10.3	47	94	0	808	27	29	9	32	1.89
36976363--36976441	25	3.3	25	67	16	76	30	29	6	34	1.82
36980059--36980908	40	21.2	40	92	0	1405	26	24	19	29	1.99
36982820--36982903	37	2.3	37	91	0	132	21	32	22	23	1.98
36983021--36983458	47	9.3	47	93	2	709	28	29	9	32	1.88
36983071--36983149	25	3.3	25	67	16	76	30	29	6	34	1.82
36988664--36988756	46	2.0	46	89	4	143	41	6	20	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36990902--36991219	47	6.7	48	76	12	243	27	19	29	23	1.98
36990902--36991172	94	2.8	93	82	7	278	26	19	29	23	1.98
36990951--36991218	96	2.8	92	79	10	247	27	19	29	23	1.98
36996081--36996278	96	2.1	95	89	2	301	31	18	13	35	1.90
37003145--37003272	37	3.4	37	96	1	229	25	32	17	23	1.97
37003312--37003511	48	4.2	48	94	0	355	31	28	6	34	1.82
37003465--37003912	49	8.4	57	77	13	260	30	27	9	33	1.88
37003527--37003562	18	2.0	18	88	0	54	33	22	11	33	1.89
37003424--37003669	123	2.0	123	98	0	474	31	26	8	32	1.87
37003626--37003914	49	5.9	49	93	3	492	29	27	8	33	1.87
37003328--37003765	219	2.0	216	81	8	512	31	27	8	32	1.86
37003626--37003916	96	3.0	96	93	3	492	29	27	8	33	1.87
37003626--37003914	145	2.0	146	93	2	490	29	27	8	33	1.87
37007688--37007857	79	2.2	80	86	5	238	27	27	20	24	1.99
37007690--37007832	40	3.6	39	92	2	232	25	27	21	25	1.99
37007761--37007949	40	4.7	40	78	7	134	28	27	20	24	1.99
37009853--37009979	37	3.4	37	96	2	229	25	33	18	23	1.97
37010019--37010217	48	4.2	48	96	1	364	31	28	6	33	1.83
37010019--37010217	95	2.1	96	96	0	364	31	28	6	33	1.83
37010163--37010419	57	4.5	57	75	11	217	31	28	8	32	1.86
37010132--37010372	120	2.0	121	98	0	466	32	26	7	33	1.84
37010171--37010617	49	8.4	57	79	11	303	30	27	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37010085--37010432	168	2.1	168	86	6	481	31	28	6	33	1.83
37010329--37010617	49	5.9	49	93	3	492	29	27	8	33	1.87
37010329--37010619	96	3.0	96	93	3	492	29	27	8	33	1.87
37010329--37010617	145	2.0	146	93	2	490	29	27	8	33	1.87
37015564--37015745	39	4.6	39	86	2	231	23	30	22	24	1.99
37022963--37023145	39	4.6	39	86	0	231	23	30	21	24	1.99
37024916--37025005	44	2.0	45	93	2	155	34	20	8	36	1.84
37034005--37034084	25	3.2	24	82	10	83	42	15	7	35	1.75
37038674--37038706	12	2.6	13	85	9	50	30	21	6	42	1.77
37038671--37038749	25	3.2	25	85	0	104	40	13	6	39	1.71
37040727--37040787	30	2.0	30	93	0	104	27	18	16	37	1.92
37055816--37055875	31	1.9	31	96	0	111	43	10	23	23	1.83
37065668--37065765	43	2.3	43	89	3	144	34	23	15	26	1.94
37066690--37067269	288	2.0	286	97	0	1106	38	17	9	34	1.82
37071861--37072259	49	8.3	49	94	1	648	32	8	29	29	1.87
37081883--37082165	18	15.3	18	70	11	115	36	14	12	36	1.85
37081883--37082165	36	7.6	36	69	12	160	36	14	12	36	1.85
37082329--37082357	6	4.8	6	100	0	58	51	17	17	13	1.76
37082339--37082494	45	3.3	45	80	10	186	42	22	17	17	1.89
37082333--37082506	51	3.5	51	81	9	225	41	21	18	17	1.90
37082903--37082939	5	7.4	5	93	0	56	37	24	0	37	1.56
37083294--37083354	21	2.9	21	79	13	63	47	18	0	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37084593--37084628	2	18.0	2	94	0	63	52	0	0	47	1.00
37095230--37095381	40	3.8	40	85	5	175	24	23	28	23	2.00
37101375--37101406	5	6.4	5	92	0	55	78	3	0	18	0.89
37107546--37107578	14	2.3	15	89	5	50	42	0	33	24	1.55
37109017--37109175	27	5.9	27	80	11	175	34	21	24	19	1.96
37109035--37109175	54	2.6	54	92	2	230	34	22	24	18	1.96
37113530--37113637	26	4.2	26	89	0	171	37	24	6	31	1.81
37117430--37117667	27	8.8	27	86	1	280	29	21	7	40	1.81
37117411--37117667	81	3.2	81	85	1	336	31	21	7	40	1.81
37117417--37117758	27	12.7	27	83	1	130	34	21	7	36	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318