Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  315  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97765020--97765047
2
14.0
2
100
0
56
50
0
0
50
1.00
97765694--97765735
18
2.2
20
87
8
61
33
21
2
42
1.66
97769984--97770147
86
2.0
82
92
4
274
31
14
15
39
1.87
97792983--97793046
31
2.0
32
93
3
112
39
14
9
37
1.78
97794103--97794127
7
3.6
7
100
0
50
84
0
0
16
0.63
97798772--97798835
26
2.5
26
87
5
85
42
14
10
32
1.80
97800053--97800098
22
2.1
22
96
4
85
19
4
4
71
1.20
97800059--97800106
22
2.2
22
88
3
71
27
4
4
64
1.30
97800292--97800377
37
2.4
36
75
12
88
68
3
5
22
1.26
97816832--97816859
5
5.6
5
100
0
56
78
0
21
0
0.75
97817907--97817972
21
3.2
20
76
6
78
60
1
4
33
1.26
97817907--97817987
42
2.0
41
82
7
101
62
2
4
29
1.29
97818070--97818135
20
3.3
20
85
2
80
48
3
3
45
1.33
97818302--97818345
22
2.0
23
86
4
63
29
6
9
54
1.58
97820103--97820141
14
2.9
13
80
3
51
48
2
0
48
1.15
97830305--97830480
46
3.8
46
79
12
216
20
21
29
28
1.98
97830302--97830473
93
1.8
93
96
0
317
20
21
29
27
1.98
97832175--97832356
46
4.0
46
86
1
222
20
21
15
41
1.89
97832175--97832351
92
1.9
92
85
0
246
20
22
15
42
1.89
97834296--97834330
17
2.2
15
90
10
52
0
20
0
80
0.72
97836031--97836060
5
6.0
5
100
0
60
40
0
0
60
0.97
97844955--97844983
12
2.5
12
94
5
51
37
0
20
41
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97851075--97851122
21
2.3
21
78
3
62
54
2
0
43
1.12
97856438--97856480
18
2.4
18
88
7
61
44
2
0
53
1.13
97856619--97856670
25
2.0
26
81
11
61
59
5
3
30
1.39
97869047--97869085
17
2.2
19
86
9
55
41
10
0
48
1.37
97871861--97871885
11
2.3
11
100
0
50
12
16
0
72
1.13
97875491--97875538
25
1.9
25
82
0
60
64
0
8
27
1.22
97876488--97876569
31
2.7
31
80
14
84
41
9
8
40
1.69
97877845--97877885
21
1.9
22
90
5
66
26
4
14
53
1.61
97878616--97878695
31
2.6
30
84
9
92
30
5
15
50
1.65
97881412--97881474
30
2.1
30
88
2
92
50
6
6
36
1.53
97882214--97882371
78
2.0
78
92
2
264
36
19
9
34
1.84
97885756--97885786
14
2.2
14
100
0
62
48
0
6
45
1.28
97886171--97886205
8
4.4
8
96
0
52
51
5
0
42
1.25
97886175--97886208
2
17.0
2
93
0
59
50
2
0
47
1.16
97889669--97889797
50
2.5
51
82
5
172
34
14
24
27
1.94
97889773--97889952
31
5.8
31
90
0
261
27
18
26
27
1.98
97889974--97890145
49
3.6
49
86
6
185
28
15
25
30
1.95
97890021--97890185
49
3.6
45
81
10
133
31
14
24
29
1.95
97889962--97890145
47
3.8
49
81
9
191
27
15
25
31
1.95
97890113--97890195
42
2.0
43
87
2
123
37
14
25
22
1.92
97892503--97892532
10
3.0
10
95
0
51
20
0
6
73
1.05
97892501--97892530
15
1.9
16
93
6
53
20
0
6
73
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97901220--97901434
114
1.9
112
88
1
322
20
21
16
41
1.90
97902473--97902551
39
2.0
39
100
0
158
40
7
7
44
1.61
97902895--97902944
24
2.1
24
92
0
82
44
18
4
34
1.68
97909824--97909868
21
2.0
23
83
8
58
42
6
11
40
1.67
97910910--97910958
21
2.4
20
86
3
62
24
0
2
73
0.94
97911420--97911471
26
1.9
28
84
7
72
40
3
0
55
1.18
97911497--97911540
22
2.0
22
86
0
61
52
0
0
47
1.00
97913315--97913345
16
1.9
16
93
0
53
35
3
12
48
1.58
97919258--97919301
2
22.5
2
95
4
81
47
0
0
52
1.00
97919778--97919843
29
2.2
30
81
2
80
39
4
12
43
1.62
97923412--97923454
19
2.2
20
83
4
52
51
0
2
46
1.13
97942884--97943019
69
2.0
69
94
0
236
54
14
10
20
1.69
97944311--97944349
2
19.5
2
94
0
69
48
0
51
0
1.00
97948311--97948338
13
2.2
13
100
0
56
21
17
7
53
1.67
97948599--97948657
18
3.3
18
75
18
61
47
0
1
50
1.11
97948609--97948641
15
2.1
16
88
5
50
48
0
3
48
1.17
97948601--97948647
16
2.9
16
78
12
51
48
0
2
48
1.13
97961357--97961387
16
1.9
16
93
0
53
29
16
12
41
1.85
97961961--97962027
18
3.9
18
71
15
61
49
0
5
44
1.27
97962001--97962043
21
2.1
20
82
4
50
48
0
2
48
1.14
97963019--97963067
23
2.1
23
88
0
71
48
14
12
24
1.77
97965773--97965896
39
3.2
39
94
0
221
13
25
22
37
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97968384--97968534
53
2.8
53
89
4
214
25
16
27
29
1.97
97970674--97970720
22
2.2
21
88
3
67
25
2
8
63
1.34
97974704--97974986
18
15.3
18
71
11
151
36
14
12
36
1.83
97974704--97974986
36
7.6
36
69
12
178
36
14
12
36
1.83
97974785--97974986
72
2.8
72
79
5
203
37
14
11
36
1.83
97975154--97975353
45
4.3
45
83
8
240
41
20
18
19
1.91
97975174--97975353
95
1.9
95
90
2
290
41
21
18
19
1.91
97975763--97975797
10
3.5
10
88
0
52
31
28
0
40
1.57
97976949--97976978
14
2.2
13
94
5
51
13
13
0
73
1.10
97978282--97978340
27
2.2
27
96
0
109
40
13
20
25
1.89
97981558--97981616
3
20.0
3
92
3
102
32
1
0
66
1.02
97989867--97989919
20
2.7
20
96
0
97
66
15
0
18
1.26
97991707--97991750
20
2.1
22
83
8
56
43
0
0
56
0.99
97992283--97992312
15
1.9
16
93
6
53
73
0
3
23
0.98
97994379--97994465
25
3.4
25
82
4
102
18
11
13
56
1.67
97995558--97995597
21
2.0
20
85
14
55
37
0
10
52
1.35
97997461--97997505
23
2.0
22
87
8
65
17
2
6
73
1.15
98001202--98001257
28
2.0
28
96
3
105
32
3
10
53
1.53
98005099--98005132
15
2.2
16
89
5
52
67
2
2
26
1.19
98014627--98014653
14
1.9
14
100
0
54
14
11
37
37
1.82
98015346--98015409
32
2.0
32
100
0
128
25
3
25
46
1.67
98023115--98023152
16
2.4
16
95
0
67
50
7
0
42
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98023115--98023152
18
2.1
18
95
0
67
50
7
0
42
1.31
98024382--98024420
19
2.1
19
90
0
60
33
5
15
46
1.68
98029101--98029161
31
2.0
31
90
0
95
52
21
1
24
1.56
98029457--98029501
23
2.0
23
87
12
67
44
26
8
20
1.80
98030016--98030062
7
7.5
6
77
17
51
29
0
6
63
1.19
98030015--98030062
13
3.8
13
88
5
71
29
0
8
62
1.24
98030015--98030047
6
5.0
7
85
14
52
30
0
9
60
1.27
98030151--98030230
31
2.6
30
90
6
115
57
11
1
30
1.41
98031031--98031067
11
3.4
11
88
0
56
67
5
0
27
1.12
98031019--98031068
22
2.3
22
82
0
73
68
8
0
24
1.16
98031019--98031051
14
2.4
14
94
0
57
69
6
0
24
1.10
98031019--98031089
11
6.5
11
80
1
54
66
12
1
19
1.32
98033779--98033904
62
2.0
62
100
0
252
30
9
20
39
1.84
98038638--98038663
2
13.0
2
100
0
52
50
0
0
50
1.00
98039141--98039204
30
2.1
30
100
0
128
42
0
23
34
1.55
98040774--98040824
2
26.0
2
84
4
68
47
3
1
47
1.32
98040762--98040813
8
6.2
8
82
8
59
50
9
0
40
1.35
98040766--98040813
10
4.8
10
89
0
69
50
8
0
41
1.33
98044630--98044662
2
16.5
2
100
0
66
51
0
0
48
1.00
98048082--98048119
18
2.1
18
95
0
67
36
10
31
21
1.87
98059615--98059778
80
2.0
80
96
0
301
57
4
7
29
1.46
98060256--98060288
16
2.1
16
100
0
66
51
18
6
24
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98060312--98060511
97
2.1
97
98
0
382
36
21
11
31
1.89
98062070--98062103
16
2.1
16
94
0
59
29
14
23
32
1.94
98077341--98077401
28
2.2
28
80
13
65
44
1
3
50
1.28
98079154--98079213
25
2.4
25
85
0
84
58
8
3
30
1.44
98079176--98079232
27
2.2
25
84
6
69
50
12
3
33
1.57
98094658--98094709
20
2.6
20
87
6
70
34
1
7
55
1.39
98111524--98111553
13
2.3
13
100
0
60
46
16
13
23
1.82
98111629--98111662
15
2.3
15
89
0
50
35
2
29
32
1.73
98121374--98121907
195
2.7
193
88
3
759
26
8
22
43
1.81
98126286--98126328
17
2.5
17
88
3
59
18
0
2
79
0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318