genome.fa.s2.2.7.7.80.10.50.1000.285.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  285  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90172488--90172579	26	3.4	26	73	8	103	53	2	0	44	1.12
90172486--90172601	55	2.1	57	91	3	191	51	2	0	45	1.14
90172500--90172621	57	2.2	53	84	9	165	51	3	0	45	1.17
90173149--90173186	16	2.4	16	86	4	51	18	10	0	71	1.14
90175946--90176086	21	6.7	21	71	4	97	48	17	19	14	1.81
90175935--90176086	42	3.6	41	78	7	153	47	16	20	15	1.83
90175935--90176086	63	2.4	63	74	2	153	47	16	20	15	1.83
90176389--90176446	28	2.1	28	100	0	116	43	15	6	34	1.74
90179177--90179227	2	25.5	2	100	0	102	50	0	49	0	1.00
90189254--90189281	14	2.0	14	100	0	56	35	14	7	42	1.73
90190416--90190521	51	2.1	51	100	0	212	42	13	13	31	1.82
90191288--90191559	69	4.0	66	79	5	206	25	22	16	35	1.95
90195893--90195952	25	2.4	25	94	2	102	25	15	11	48	1.78
90199074--90199112	18	2.2	18	86	9	53	66	2	7	23	1.30
90199815--90199858	2	22.5	2	90	4	72	50	0	0	50	1.00
90203738--90204012	27	10.1	27	81	2	237	40	22	16	20	1.91
90203738--90203928	55	3.5	53	79	9	208	42	24	14	18	1.87
90203738--90203984	136	1.8	136	82	3	318	41	22	16	19	1.90
90212647--90212683	14	2.6	15	79	12	51	56	2	0	40	1.13
90222806--90223256	46	9.8	46	90	1	591	41	14	23	20	1.89
90222814--90223256	139	3.2	138	89	1	638	41	14	23	20	1.89
90222806--90223220	185	2.2	185	91	0	670	40	14	24	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90224697--90224727	11	2.8	11	95	0	53	32	9	19	38	1.84
90227830--90228281	46	9.8	46	90	1	584	41	14	23	20	1.89
90227839--90228281	139	3.2	138	90	2	647	41	14	23	20	1.89
90227831--90228281	231	2.0	231	89	1	690	41	14	23	20	1.89
90232786--90232828	22	1.9	23	85	4	61	18	18	9	53	1.70
90253173--90253244	28	2.5	28	80	10	83	51	2	0	45	1.15
90254365--90254392	5	5.6	5	100	0	56	21	0	57	21	1.41
90260536--90260562	2	13.5	2	100	0	54	51	0	0	48	1.00
90260771--90260836	31	2.2	30	83	8	80	45	1	3	50	1.26
90261301--90261349	23	2.1	23	85	7	64	34	8	6	51	1.57
90274336--90274392	28	2.0	28	96	0	105	29	7	29	33	1.84
90277753--90277791	19	2.1	18	85	9	51	56	2	12	28	1.50
90277906--90277930	13	1.9	13	100	0	50	68	0	0	32	0.90
90277936--90277973	20	1.9	20	89	10	60	73	0	15	10	1.09
90277946--90278029	31	3.2	25	74	19	80	70	2	22	4	1.18
90277945--90278029	10	7.9	10	70	17	55	70	2	22	4	1.17
90281426--90281482	28	2.0	28	96	0	105	22	8	31	36	1.85
90284670--90284857	77	2.5	77	84	4	256	40	19	5	34	1.74
90284698--90284884	77	2.5	76	87	2	252	40	19	5	34	1.75
90284972--90285096	9	13.4	9	70	17	69	68	0	3	28	1.04
90284970--90285096	29	4.6	26	71	21	89	69	0	3	27	1.04
90285321--90285381	18	3.4	17	73	10	50	29	3	1	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90286886--90286948	30	2.1	30	91	5	101	25	4	11	58	1.51
90292670--90292725	21	2.7	21	78	10	55	39	1	0	58	1.08
90292679--90292724	21	2.1	22	84	8	58	34	2	0	63	1.07
90293588--90293621	2	17.0	2	100	0	68	50	0	0	50	1.00
90315046--90315097	24	2.2	24	92	0	86	55	7	1	34	1.39
90319277--90319310	17	2.0	17	88	11	52	50	0	0	50	1.00
90319281--90319319	19	2.1	18	85	4	51	46	0	2	51	1.14
90320870--90320909	21	1.9	21	84	0	53	32	20	12	35	1.90
90321144--90321185	2	21.0	2	100	0	84	50	0	0	50	1.00
90327846--90327886	20	2.2	18	86	8	55	53	0	4	41	1.22
90328836--90328874	19	2.1	19	90	0	60	51	2	0	46	1.14
90333060--90333193	26	5.2	26	95	2	218	36	23	5	34	1.78
90336955--90337238	134	2.1	137	96	2	520	31	25	18	24	1.97
90339017--90339150	26	5.2	26	95	2	218	36	23	5	34	1.78
90339800--90339935	26	5.2	26	95	0	227	37	23	5	33	1.77
90342044--90342236	95	2.1	94	92	3	318	47	9	16	26	1.77
90346414--90346475	3	21.0	3	79	9	65	32	1	4	61	1.27
90347374--90347407	3	11.3	3	100	0	68	32	0	0	67	0.91
90349772--90349854	23	3.5	24	73	8	71	55	2	0	42	1.13
90351246--90351274	2	14.5	2	100	0	58	51	0	0	48	1.00
90353265--90353312	21	2.2	22	77	3	53	2	12	12	72	1.20
90371562--90371694	66	2.0	66	92	2	223	26	18	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90373167--90373274	26	4.2	26	93	2	173	35	4	24	36	1.76
90374894--90374980	27	3.2	27	86	1	120	17	22	25	34	1.96
90374894--90374998	27	3.9	27	81	12	117	19	23	22	34	1.96
90376775--90376811	19	1.9	19	88	0	56	43	8	18	29	1.79
90380832--90381068	39	6.1	39	89	0	348	23	27	19	29	1.98
90390557--90390624	28	2.5	28	88	9	97	20	5	27	45	1.74
90392252--90392289	20	1.9	20	88	0	58	52	10	2	34	1.50
90398573--90398628	28	2.0	28	96	3	105	17	8	26	46	1.78
90400255--90400292	20	1.9	20	88	0	58	52	10	2	34	1.50
90402853--90402934	35	2.4	34	87	2	119	20	50	8	20	1.74
90403302--90403329	11	2.5	11	100	0	56	78	7	0	14	0.95
90403920--90403956	3	12.3	3	94	0	65	29	0	2	67	1.04
90404058--90404136	3	26.3	3	97	0	149	31	0	1	67	0.99
90403920--90404282	186	2.0	180	96	3	663	30	3	7	58	1.44
90404244--90404282	3	13.0	3	100	0	78	33	0	0	66	0.92
90404497--90404566	33	2.2	30	82	9	86	38	5	2	52	1.40
90416934--90417860	74	12.6	74	88	4	1254	32	15	19	31	1.94
90416934--90417854	293	3.1	294	90	3	1354	32	15	19	31	1.94
90418876--90418910	10	3.4	10	92	4	52	80	5	0	14	0.89
90418987--90419021	11	3.2	11	88	11	54	0	54	0	45	0.99
90419506--90419572	3	22.3	3	96	0	125	31	0	1	67	1.00
90419677--90419719	3	14.3	3	86	13	54	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90419521--90419853	155	2.2	155	91	7	545	30	3	7	57	1.45
90419829--90419853	13	1.9	13	100	0	50	32	0	0	68	0.90
90420124--90420153	2	15.5	2	93	6	53	46	0	0	53	1.00
90420979--90421030	25	2.1	25	96	0	95	17	38	15	28	1.90
90424420--90424448	14	2.0	15	93	6	51	20	6	17	55	1.65
90424568--90424692	50	2.5	51	89	3	182	34	16	22	27	1.95
90424668--90424839	31	5.8	31	83	13	227	27	18	29	25	1.98
90424868--90424987	47	2.6	45	81	6	141	27	15	25	30	1.96
90426827--90426869	21	2.1	20	82	4	50	41	2	18	37	1.63
90442065--90442102	15	2.5	15	86	0	58	10	44	28	15	1.80
90442270--90442335	18	3.5	19	74	15	66	16	9	0	74	1.06
90442272--90442337	25	2.6	25	77	13	66	15	7	0	77	0.98
90442295--90442363	24	2.7	27	73	24	69	17	11	1	69	1.25
90451978--90452023	22	2.1	22	100	0	92	63	0	17	19	1.32
90452749--90452792	21	2.0	22	91	4	72	54	0	11	34	1.36
90459454--90459507	21	2.6	21	87	0	81	27	7	35	29	1.84
90462781--90462823	17	2.4	18	76	7	52	51	0	6	41	1.29
90463793--90463818	6	4.3	6	100	0	52	19	19	15	46	1.85
90471520--90471582	5	12.8	5	96	3	119	41	0	0	58	0.98
90471489--90471531	17	2.4	18	80	7	61	53	0	4	41	1.21
90471664--90471699	16	2.2	16	90	0	54	69	0	30	0	0.89
90472544--90472577	6	5.7	6	89	0	50	23	17	8	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90479668--90479775	26	4.2	26	93	0	189	36	24	7	32	1.83
90487830--90487937	26	4.2	26	93	0	189	36	24	7	32	1.83
90490677--90490725	13	3.7	13	76	12	55	20	0	0	79	0.73
90490676--90490736	25	2.3	26	76	15	63	24	0	0	75	0.80
90490683--90490726	19	2.3	19	96	0	79	22	0	0	77	0.77
90490676--90490736	12	4.6	14	76	21	53	24	0	0	75	0.80
90491350--90491389	15	2.5	17	77	22	50	62	5	0	32	1.17
90496634--90496659	13	2.0	13	100	0	52	38	0	23	38	1.55
90498399--90498429	8	3.9	8	100	0	62	90	0	0	9	0.46
90498967--90499015	25	2.0	25	95	0	89	34	16	2	46	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318