Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  12  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3041556--3041630
32
2.4
31
82
10
98
12
6
18
62
1.50
3041545--3041624
15
5.6
14
72
21
51
11
5
18
65
1.43
3041556--3041630
31
2.4
32
82
10
93
12
6
18
62
1.50
3042032--3042137
35
3.0
35
95
0
194
22
12
49
16
1.78
3042793--3042823
2
15.5
2
100
0
62
48
0
0
51
1.00
3042916--3042953
16
2.3
17
86
4
51
34
2
2
60
1.24
3054041--3054116
30
2.5
30
87
4
109
40
26
22
10
1.86
3054397--3054446
22
2.3
23
77
19
54
56
0
4
40
1.18
3057968--3058007
21
2.0
20
85
5
53
42
25
0
32
1.55
3057972--3058014
21
2.0
21
81
0
50
44
25
0
30
1.55
3058052--3058466
208
2.0
211
91
1
674
34
15
15
33
1.90
3059204--3059236
9
3.7
9
91
0
57
24
12
24
39
1.89
3059202--3059236
18
1.9
18
100
0
70
28
11
22
37
1.89
3060575--3060651
26
3.0
26
74
0
73
35
22
24
18
1.96
3069139--3069178
15
2.7
16
85
11
50
40
2
0
57
1.12
3071015--3071058
22
2.0
23
82
13
56
52
9
11
27
1.67
3071814--3071843
3
10.3
3
92
7
53
70
0
0
30
0.88
3073472--3073536
15
4.4
15
81
9
80
9
15
13
61
1.56
3073470--3073536
30
2.3
29
84
7
91
8
14
16
59
1.59
3076893--3076928
2
18.0
2
88
11
56
47
2
0
50
1.15
3077350--3077384
3
11.3
3
87
6
52
62
0
0
37
0.95
3081086--3081115
6
4.8
6
95
4
51
16
0
0
83
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3083544--3083640
48
2.0
48
97
0
185
37
8
22
31
1.84
3083905--3083942
18
2.1
18
85
9
51
44
13
2
39
1.57
3091196--3091543
132
2.6
133
83
5
388
35
19
18
27
1.95
3094221--3094344
45
2.8
43
77
11
126
27
23
20
29
1.99
3106230--3106579
132
2.7
132
84
4
420
35
19
17
27
1.94
3109687--3109734
6
7.8
6
82
13
62
18
2
0
79
0.84
3109687--3109734
13
3.9
12
81
13
62
18
2
0
79
0.84
3120193--3120294
33
3.2
33
67
27
101
42
6
14
36
1.73
3120176--3120295
63
1.9
63
98
0
231
43
7
13
35
1.72
3124114--3124242
35
3.5
36
82
12
147
32
10
24
32
1.90
3131569--3131734
35
4.6
35
82
8
172
31
10
24
33
1.90
3131569--3131739
75
2.4
75
85
7
221
31
11
23
33
1.90
3148322--3148349
3
9.3
3
100
0
56
64
0
35
0
0.94
3149047--3149071
10
2.5
10
100
0
50
0
0
8
92
0.40
3151724--3151785
31
2.0
31
90
0
97
37
9
8
45
1.67
3168362--3168458
48
2.0
48
100
0
194
37
13
10
39
1.79
3176388--3176418
16
2.0
16
93
6
55
29
12
25
32
1.93
3176958--3177050
47
2.0
47
100
0
186
34
23
11
30
1.91
3191387--3191411
11
2.3
11
100
0
50
32
16
0
52
1.44
3199641--3199684
18
2.5
18
96
3
81
50
27
4
18
1.66
3200862--3200887
2
13.0
2
100
0
52
50
0
0
50
1.00
3201386--3201410
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3202836--3202872
16
2.3
16
100
0
74
37
5
8
48
1.56
3202843--3202881
16
2.4
16
86
0
51
43
5
7
43
1.55
3207423--3207598
46
3.8
46
81
10
232
20
21
29
28
1.98
3207419--3207590
93
1.8
93
96
0
317
20
22
30
27
1.98
3215060--3215117
28
2.0
31
86
10
86
60
10
5
24
1.49
3224705--3224746
21
2.0
21
90
9
68
45
4
33
16
1.69
3224997--3225138
27
5.3
27
86
0
185
35
19
20
24
1.95
3224997--3225136
54
2.6
54
88
0
208
36
17
20
25
1.95
3225139--3225192
27
2.0
26
85
3
72
22
18
20
38
1.93
3225792--3225843
27
2.0
26
84
3
68
17
26
21
34
1.95
3226071--3226158
43
2.1
43
93
2
151
12
17
21
48
1.79
3232552--3232720
27
6.3
27
89
0
239
36
20
19
23
1.95
3233372--3233423
27
2.0
26
84
3
68
17
26
21
34
1.95
3237432--3237464
2
16.5
2
100
0
66
51
0
0
48
1.00
3240646--3240678
14
2.3
15
89
5
50
48
12
6
33
1.65
3240806--3240831
13
2.0
13
100
0
52
30
7
7
53
1.57
3247850--3247883
16
2.1
17
89
10
54
44
0
0
55
0.99
3248090--3248181
38
2.4
38
85
1
121
30
19
22
27
1.98
3248269--3248323
28
1.9
29
82
10
69
34
1
5
58
1.32
3248679--3248753
7
10.4
7
76
11
53
26
0
42
30
1.56
3248657--3248727
29
2.4
30
79
6
74
25
0
36
38
1.56
3248878--3248917
15
2.6
16
88
7
57
15
5
30
50
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3249168--3249235
26
2.6
27
93
4
113
42
7
4
45
1.52
3249348--3249382
17
2.0
17
88
5
52
34
0
0
65
0.93
3251730--3251789
19
3.2
19
73
19
63
25
6
5
63
1.39
3253655--3253718
33
1.9
33
90
0
101
53
12
1
32
1.48
3253634--3254077
9
49.1
9
67
12
92
45
16
1
35
1.58
3253646--3254060
130
3.2
129
92
2
672
46
15
1
36
1.58
3253911--3253978
33
2.1
33
91
0
109
52
13
1
32
1.49
3255852--3255876
12
2.1
12
100
0
50
32
8
28
32
1.86
3259165--3259193
14
2.1
14
93
6
51
34
0
6
58
1.25
3259605--3259675
21
3.4
21
86
0
97
28
19
49
2
1.62
3259603--3259697
21
4.6
21
77
12
65
31
18
45
4
1.69
3259907--3259984
30
2.6
30
83
2
84
14
5
20
60
1.53
3260044--3260151
43
2.6
42
85
5
148
29
29
18
22
1.97
3261163--3261206
20
2.3
19
80
4
52
54
2
9
34
1.44
3268914--3268974
16
3.8
16
80
4
52
72
0
6
21
1.07
3268802--3269121
164
2.0
163
96
2
590
64
1
6
27
1.25
3268968--3269216
49
5.1
49
72
15
187
63
1
5
29
1.26
3269078--3269165
21
4.4
21
69
22
73
68
1
3
27
1.13
3268942--3269235
145
2.0
147
97
1
556
63
1
6
27
1.27
3269316--3269688
26
14.7
26
66
14
131
58
2
8
31
1.41
3273006--3273060
20
2.9
18
78
10
56
61
1
5
30
1.29
3277068--3277441
54
6.9
54
87
1
466
40
20
26
13
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3277068--3277512
108
4.0
108
83
5
482
41
20
25
13
1.88
3277172--3277263
27
3.4
27
67
16
73
43
15
28
13
1.83
3277281--3277425
27
5.4
27
65
12
91
40
20
26
13
1.89
3277068--3277512
54
8.1
53
84
7
426
41
20
25
13
1.88
3277524--3277622
51
1.9
51
85
4
137
45
20
20
14
1.85
3277575--3277769
63
3.1
63
91
0
309
42
28
15
12
1.84
3277354--3277709
186
1.9
189
80
5
427
43
25
19
12
1.85
3279431--3279491
31
2.0
31
83
6
79
24
21
18
36
1.95
3291483--3291516
15
2.2
16
89
5
52
58
5
2
32
1.37
3294505--3294538
16
2.1
16
89
10
52
52
0
0
47
1.00
3294726--3294794
23
2.8
25
78
10
63
49
0
0
50
1.00
3295168--3295209
21
2.0
21
85
0
57
50
4
2
42
1.36
3296665--3296689
13
1.9
13
100
0
50
32
0
4
64
1.12
3303214--3303254
5
8.4
5
89
5
66
43
0
0
56
0.99
3303215--3303258
19
2.4
18
88
7
70
43
0
0
56
0.99
3303784--3303823
3
13.0
3
84
5
53
37
0
2
60
1.11
3304261--3304304
22
1.9
24
86
9
65
54
2
20
22
1.56
3304908--3305018
38
2.9
37
75
6
105
20
20
28
29
1.98
3304910--3305003
41
2.4
40
77
7
95
22
20
29
27
1.98
3305971--3306066
45
2.1
45
98
0
183
54
7
6
32
1.53
3326901--3326954
27
2.0
27
96
0
99
35
11
24
29
1.90
3328987--3329028
19
2.2
19
86
0
57
47
7
2
42
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3329076--3329102
13
2.1
13
100
0
54
48
7
7
37
1.59
3335263--3335296
17
2.0
17
94
0
59
50
0
0
50
1.00
3335994--3336027
17
2.0
17
94
0
59
50
0
0
50
1.00
3336142--3336201
29
2.0
29
83
6
75
53
10
10
26
1.66
3339072--3339112
16
2.6
16
84
0
55
31
0
12
56
1.36
3340131--3340193
30
2.1
30
91
5
101
25
3
15
55
1.55
3342339--3342653
46
6.8
46
91
2
463
40
14
23
20
1.90
3342742--3342836
26
3.6
26
75
13
70
38
4
20
36
1.72
3343647--3343699
25
2.1
24
82
6
61
66
1
9
22
1.31
3343660--3343713
24
2.2
25
80
9
67
64
1
7
25
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318