genome.fa.s2.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  167  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51774256--51774366	47	2.4	47	84	6	154	25	16	23	35	1.95
51779548--51779617	27	2.6	27	95	2	122	30	27	14	28	1.95
51781840--51781940	28	3.5	30	82	6	118	29	14	26	28	1.95
51781869--51781944	29	2.7	28	76	13	75	30	14	26	28	1.95
51789731--51789831	28	3.5	30	82	6	118	29	14	26	28	1.95
51789760--51789835	29	2.7	28	76	13	75	30	14	26	28	1.95
51792927--51792962	14	2.6	14	90	0	63	36	5	27	30	1.80
51796986--51797034	26	1.9	25	87	4	71	40	6	14	38	1.71
51797162--51797209	24	2.0	24	100	0	96	45	8	16	29	1.76
51800416--51800465	17	2.8	18	90	6	75	62	0	4	34	1.14
51800510--51800540	2	15.5	2	100	0	62	48	0	0	51	1.00
51800841--51800875	9	3.8	9	92	3	52	42	0	0	57	0.99
51803220--51803274	9	6.1	9	82	0	74	36	21	10	30	1.88
51803220--51803274	18	3.1	18	89	0	83	36	21	10	30	1.88
51803221--51803272	27	1.9	27	92	0	86	38	23	11	26	1.89
51811931--51812138	40	5.2	40	85	2	258	25	21	26	26	1.99
51816177--51816358	24	7.6	24	94	0	285	34	25	18	21	1.96
51816155--51816358	48	4.3	47	86	5	218	33	24	18	23	1.97
51816809--51816838	2	15.0	2	100	0	60	50	0	0	50	1.00
51823010--51823216	40	5.2	40	83	4	240	24	21	27	26	1.99
51824983--51825043	30	2.0	30	83	0	77	31	22	8	37	1.84
51827633--51827759	67	1.9	66	84	7	170	37	6	13	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51838284--51838344	30	2.0	30	87	0	86	29	22	9	37	1.87
51840280--51840393	57	2.0	57	98	0	219	28	19	20	31	1.97
51843243--51843352	55	2.0	55	98	0	211	20	34	11	32	1.89
51857113--51857357	49	4.9	49	81	3	283	28	26	18	26	1.98
51857129--51857357	100	2.3	98	83	3	287	29	27	17	25	1.98
51858004--51858063	30	2.0	30	83	6	77	28	25	8	38	1.84
51859201--51859261	30	2.0	30	87	0	86	31	22	8	37	1.84
51862942--51863093	40	3.8	40	89	1	207	23	23	28	24	1.99
51862942--51863128	40	4.7	40	87	1	205	25	23	28	22	1.99
51871216--51871347	29	4.6	29	91	0	192	27	15	31	25	1.95
51878378--51878538	29	5.6	29	93	0	259	26	14	32	26	1.95
51880614--51880780	40	4.2	40	78	3	176	25	22	27	25	2.00
51880614--51880780	80	2.1	80	83	3	203	25	22	27	25	2.00
51888840--51888885	22	2.1	22	83	0	56	47	8	6	36	1.60
51890570--51890639	27	2.6	27	90	2	113	30	25	14	30	1.95
51891137--51891162	2	13.0	2	100	0	52	50	0	0	50	1.00
51893303--51893348	22	2.1	22	87	0	65	45	10	6	36	1.65
51907133--51907261	44	3.0	44	79	5	138	21	18	31	28	1.97
51910053--51910203	40	3.8	40	77	13	134	27	23	26	22	2.00
51910090--51910219	40	3.2	40	77	4	138	24	23	27	23	2.00
51918037--51918187	40	3.8	40	77	13	134	27	23	26	22	2.00
51918074--51918203	40	3.2	40	77	4	138	24	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51923056--51923089	16	2.1	16	100	0	68	23	26	32	17	1.97
51925537--51925687	40	3.8	40	77	13	134	27	23	26	22	2.00
51925574--51925703	40	3.2	40	77	4	138	24	23	27	23	2.00
51939182--51939250	34	2.0	34	100	0	138	40	14	2	42	1.61
51941515--51941700	40	4.7	40	86	5	225	25	22	26	26	2.00
51945926--51946085	56	2.9	56	79	10	168	20	18	35	26	1.95
51957289--51957332	23	1.9	23	85	0	61	29	18	27	25	1.98
51958292--51958326	18	1.9	18	88	11	54	54	11	0	34	1.37
51961409--51961616	40	5.2	39	81	2	209	25	26	22	25	2.00
51961409--51961614	80	2.6	81	81	7	233	25	27	22	24	2.00
51964481--51964509	14	2.1	14	100	0	58	34	0	0	65	0.93
51965895--51965948	27	2.0	27	85	7	74	59	0	37	3	1.15
51966188--51966247	29	2.1	29	100	0	120	48	16	6	28	1.71
51972085--51972234	77	1.9	80	83	6	200	22	28	23	25	1.99
51972045--51972234	40	4.8	39	77	7	161	22	28	24	24	1.99
51978269--51978367	28	3.5	28	81	9	112	29	25	16	29	1.96
51982629--51982727	28	3.5	28	81	9	112	29	25	16	29	1.96
51987340--51987489	77	1.9	80	83	6	200	22	28	23	25	1.99
51987310--51987489	40	4.6	39	77	10	154	22	28	24	24	2.00
51993795--51993897	52	2.0	53	84	5	138	35	14	13	35	1.86
52012104--52012139	13	3.0	12	92	8	56	83	0	0	16	0.65
52012104--52012143	17	2.5	16	88	8	55	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52012104--52012139	6	6.0	6	87	12	56	83	0	0	16	0.65
52015638--52015698	30	2.0	30	87	0	86	42	6	21	29	1.78
52016363--52016529	68	2.5	64	77	10	151	29	16	27	25	1.97
52016512--52016703	50	3.9	49	82	2	213	27	17	25	29	1.98
52021036--52021231	50	3.9	49	83	2	230	26	18	26	29	1.98
52021042--52021234	99	1.9	100	85	2	262	26	17	25	30	1.97
52026556--52026613	24	2.5	24	80	8	66	6	27	1	63	1.29
52026599--52026757	74	2.1	74	95	1	282	9	24	6	59	1.51
52026619--52026774	74	2.1	74	83	4	190	13	23	8	54	1.67
52029785--52029885	38	2.6	38	87	3	130	36	5	5	51	1.51
52031175--52031348	52	3.4	50	72	10	145	35	15	15	33	1.89
52032312--52032347	14	2.5	14	86	4	54	36	0	13	50	1.43
52033115--52033196	35	2.4	34	87	2	119	20	50	8	20	1.74
52033564--52033594	12	2.6	12	100	0	62	80	6	0	12	0.89
52033688--52033722	11	3.2	11	88	11	54	0	54	0	45	0.99
52034193--52034268	3	25.3	3	97	0	143	31	0	1	67	0.99
52034374--52034418	3	15.0	3	100	0	90	33	0	0	66	0.92
52034456--52034487	14	2.1	16	88	11	50	28	6	0	65	1.16
52034635--52034707	33	2.3	30	82	11	92	36	5	2	54	1.38
52040829--52040956	40	3.2	40	80	13	131	22	29	25	22	1.99
52044754--52044799	24	1.9	24	86	0	65	30	23	21	23	1.99
52045311--52045340	3	10.0	3	92	0	51	3	33	0	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52047527--52047571	18	2.5	17	82	7	54	15	0	8	75	1.03
52054902--52054934	8	4.2	8	88	7	50	66	0	0	33	0.92
52054819--52054934	20	5.5	20	70	17	65	60	4	0	34	1.22
52057149--52057329	94	1.9	94	87	2	265	25	23	20	30	1.98
52058721--52058806	44	2.0	44	81	4	102	33	23	15	27	1.94
52068206--52068230	11	2.3	11	100	0	50	92	0	8	0	0.40
52070711--52070760	25	2.0	26	84	11	68	42	2	2	54	1.23
52070835--52070881	13	3.6	13	83	8	60	61	0	2	36	1.08
52073013--52073118	40	2.7	40	83	0	131	22	27	23	26	2.00
52074537--52074733	70	2.8	69	88	5	263	32	17	28	20	1.96
52074571--52074733	70	2.3	71	96	1	301	34	18	28	19	1.95
52080680--52080889	40	5.2	40	87	2	305	25	24	28	21	1.99
52092666--52092875	40	5.2	40	87	2	305	25	24	28	21	1.99
52097167--52097364	71	2.8	70	88	3	265	33	17	28	20	1.96
52097201--52097364	71	2.3	71	96	0	301	34	18	28	18	1.95
52106417--52106526	40	2.8	40	85	0	148	23	26	23	26	2.00
52111599--52111806	40	5.2	40	85	2	260	25	27	22	24	2.00
52114394--52114461	27	2.6	27	92	2	111	32	17	14	35	1.91
52114876--52116208	662	2.0	663	86	2	1863	36	18	11	32	1.87
52128729--52128936	53	3.9	54	75	4	195	22	22	17	37	1.94
52131229--52131320	42	2.2	42	82	3	114	27	26	22	23	2.00
52140635--52140750	43	2.7	43	90	4	191	24	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52141317--52141349	16	1.9	18	88	11	52	18	12	18	51	1.76
52141813--52141838	2	13.0	2	100	0	52	50	0	0	50	1.00
52141836--52141878	21	2.0	21	82	8	52	18	2	2	76	1.00
52141863--52141932	27	2.6	26	84	8	86	24	4	2	68	1.21
52142319--52142371	25	2.1	25	82	0	61	62	5	16	15	1.51
52144196--52144239	2	22.0	2	100	0	88	0	50	0	50	1.00
52144670--52144699	3	10.0	3	100	0	60	33	0	0	66	0.92
52154406--52154591	40	4.7	40	85	5	164	26	26	22	25	2.00
52154406--52154591	80	2.3	82	81	10	224	26	26	22	25	2.00
52162514--52162698	40	4.6	39	86	5	221	25	26	21	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318