Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  20  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5255714--5256108
126
3.1
126
86
2
544
29
16
14
39
1.88
5256234--5256304
28
2.5
27
77
8
79
40
18
2
38
1.65
5256690--5256729
15
2.7
15
84
11
55
30
2
2
65
1.19
5260307--5260666
46
7.8
46
91
0
488
40
13
23
21
1.90
5263148--5263256
43
2.5
44
84
4
139
33
13
22
29
1.93
5268380--5268453
29
2.7
29
78
12
86
47
1
0
51
1.09
5273708--5273785
40
2.0
39
85
11
108
43
15
7
33
1.75
5275097--5275178
40
2.0
40
100
0
164
50
10
9
29
1.70
5281258--5281304
6
7.5
6
77
17
51
29
2
0
68
1.02
5290888--5290990
29
3.6
29
81
2
118
21
16
33
29
1.95
5293603--5293688
42
2.0
42
100
0
172
32
6
27
32
1.84
5306934--5306969
3
12.0
3
100
0
72
66
0
0
33
0.92
5310311--5310335
12
2.1
12
100
0
50
40
8
16
36
1.77
5314474--5314523
24
2.1
24
100
0
100
50
24
0
26
1.50
5316727--5316772
22
2.1
22
95
0
83
54
21
10
13
1.69
5318538--5318788
43
5.8
43
83
2
261
29
26
18
25
1.98
5319626--5319654
13
2.1
14
93
6
51
55
10
0
34
1.34
5323319--5323359
15
2.8
15
75
17
50
65
0
0
34
0.93
5327473--5327542
9
8.1
9
77
15
76
32
0
21
45
1.52
5327473--5327542
18
4.1
18
82
12
85
32
0
21
45
1.52
5327487--5327555
33
2.0
35
91
5
115
34
1
20
43
1.61
5331562--5331656
32
3.0
32
90
0
136
28
25
10
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5331708--5331778
28
2.5
28
80
8
74
29
30
15
23
1.95
5334145--5334196
15
3.3
15
81
5
59
48
36
1
13
1.54
5334272--5334305
15
2.3
15
100
0
68
52
32
0
14
1.42
5334276--5334342
14
4.7
14
75
1
53
49
26
1
22
1.59
5335416--5335465
14
3.4
15
75
10
50
30
0
18
52
1.46
5335568--5335676
41
2.6
42
88
4
150
21
18
24
35
1.95
5336682--5336730
24
2.0
25
88
4
73
36
2
12
48
1.52
5343204--5343253
14
3.4
15
75
10
50
30
0
18
52
1.46
5343355--5343464
42
2.6
42
91
0
175
21
17
25
35
1.95
5343359--5343498
42
3.4
40
82
6
140
20
18
25
35
1.95
5345304--5345357
15
3.7
15
72
5
56
24
0
29
46
1.53
5345337--5345391
14
3.8
14
78
7
56
27
0
21
50
1.49
5345320--5345393
37
2.0
36
84
2
94
27
0
24
48
1.51
5345681--5345742
29
2.1
29
84
0
79
25
24
22
27
2.00
5345710--5345864
41
3.9
41
80
8
183
25
21
21
31
1.98
5349126--5349194
33
2.1
33
97
0
129
24
17
17
40
1.90
5352676--5352713
3
12.7
3
100
0
76
31
0
0
68
0.90
5353851--5353896
22
2.0
23
83
4
58
28
4
34
32
1.77
5354486--5354638
39
3.9
39
93
1
236
47
3
19
29
1.65
5354486--5354638
79
1.9
79
89
3
238
47
3
19
29
1.65
5356531--5356610
41
1.9
42
87
2
117
65
6
1
27
1.25
5358167--5358191
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5364893--5364978
3
28.3
3
73
19
65
65
1
3
30
1.17
5364893--5364975
12
6.8
12
76
16
73
65
1
3
30
1.17
5364898--5364978
18
4.4
18
79
13
76
65
1
3
29
1.17
5364893--5364979
27
3.4
27
71
19
78
65
1
3
29
1.16
5365306--5365405
21
4.7
21
74
14
78
57
32
1
10
1.39
5365310--5365348
20
2.0
19
90
5
60
66
25
0
7
1.18
5365306--5365355
22
2.3
21
86
3
64
62
28
0
10
1.27
5365980--5367251
132
9.6
132
94
1
2001
25
22
19
31
1.98
5366066--5367251
264
4.5
264
97
0
2212
25
22
19
31
1.98
5366032--5367251
396
3.1
396
96
0
2235
26
22
19
31
1.98
5367304--5367491
68
2.8
69
85
7
267
25
22
21
30
1.99
5367515--5367853
88
3.9
88
75
7
289
21
21
21
35
1.96
5367607--5367902
132
2.2
132
93
0
493
19
21
22
35
1.96
5367520--5368069
175
3.2
174
81
5
544
20
22
21
35
1.96
5367520--5368115
43
13.7
43
74
6
371
20
22
21
35
1.96
5369472--5369501
6
5.0
6
91
0
51
3
33
13
50
1.58
5372288--5372334
19
2.5
20
89
6
71
42
8
21
27
1.81
5375034--5375119
3
28.3
3
73
19
65
65
1
3
30
1.17
5375034--5375116
12
6.8
12
76
16
73
65
1
3
30
1.17
5375039--5375119
18
4.4
18
79
13
76
65
1
3
29
1.17
5375034--5375120
27
3.4
27
71
19
78
65
1
3
29
1.16
5375450--5375546
21
4.5
22
74
18
78
58
30
1
9
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5375446--5375546
22
4.6
22
77
10
91
57
31
0
9
1.38
5376467--5376680
46
4.6
46
81
12
233
22
30
19
26
1.98
5376467--5376683
94
2.3
93
85
9
282
23
30
19
26
1.98
5376996--5377052
30
1.9
30
92
0
96
28
22
17
31
1.97
5384622--5384660
19
2.1
19
100
0
78
30
33
10
25
1.89
5385592--5385625
16
2.0
18
88
11
54
76
2
2
17
1.04
5391020--5391058
18
2.2
18
86
9
53
61
12
0
25
1.31
5391143--5391201
30
2.0
30
86
0
82
55
13
5
25
1.58
5392935--5393029
42
2.2
42
94
1
163
44
12
14
28
1.82
5393203--5393227
2
12.5
2
100
0
50
48
0
0
52
1.00
5399091--5399115
2
12.5
2
100
0
50
52
0
0
48
1.00
5399202--5399241
21
2.0
21
85
9
57
57
2
0
40
1.12
5399531--5399580
3
16.7
3
100
0
100
66
0
0
34
0.92
5399730--5400040
101
3.1
101
77
16
354
60
3
4
31
1.35
5399853--5399991
3
45.3
3
75
11
122
59
2
5
32
1.33
5400016--5400048
16
2.1
16
88
5
50
66
0
0
33
0.92
5400593--5400637
19
2.3
20
88
3
65
53
0
46
0
1.00
5406841--5406880
2
20.5
2
94
5
73
50
0
0
50
1.00
5409717--5409807
45
2.1
43
83
8
112
43
2
1
52
1.20
5410174--5410227
27
2.0
27
96
0
99
18
27
11
42
1.84
5411735--5411834
42
2.4
42
80
9
114
19
25
15
41
1.89
5411816--5411872
21
2.7
21
72
0
51
17
19
19
43
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5411768--5411872
42
2.5
43
84
6
135
16
21
17
44
1.86
5411844--5411884
21
2.0
21
90
0
64
14
9
21
53
1.70
5429163--5429204
18
2.3
18
91
0
66
23
26
4
45
1.73
5429607--5429705
32
3.3
29
78
9
92
42
14
1
42
1.52
5435409--5435436
13
2.2
13
100
0
56
35
7
21
35
1.81
5436045--5436117
19
3.7
19
77
12
67
64
0
6
28
1.19
5436339--5436394
19
3.0
19
81
5
69
32
3
5
58
1.37
5436384--5436486
48
2.1
48
82
7
120
38
2
0
57
1.20
5436694--5436723
7
4.3
7
91
0
51
76
0
23
0
0.78
5436939--5436985
20
2.3
20
88
0
67
40
0
0
59
0.97
5436935--5436985
12
4.0
13
87
7
52
43
0
0
56
0.99
5436941--5436985
6
7.2
6
87
9
54
40
0
0
60
0.97
5449025--5449074
22
2.3
22
86
6
66
26
26
36
12
1.91
5456645--5456678
2
17.0
2
100
0
68
50
0
0
50
1.00
5456844--5456895
16
3.2
15
78
19
52
38
1
1
57
1.21
5456844--5456890
18
2.8
17
84
12
53
38
2
2
57
1.23
5463174--5463217
3
14.7
3
100
0
88
31
0
0
68
0.90
5463971--5464009
16
2.2
16
86
13
51
30
5
7
56
1.49
5464808--5464857
22
2.4
20
83
9
64
28
24
4
44
1.72
5464982--5465070
40
2.3
40
80
5
103
31
25
16
25
1.97
5466426--5466476
14
3.5
14
82
15
59
80
0
0
19
0.71
5466417--5466476
24
2.4
25
81
18
79
78
1
0
20
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5466427--5466473
10
4.8
10
92
2
78
80
0
0
19
0.70
5467320--5467353
9
3.8
9
92
0
59
0
23
0
76
0.79
5468505--5468536
5
6.6
5
92
7
57
18
0
0
81
0.70
5468505--5468535
9
3.3
9
91
8
53
19
0
0
80
0.71
5472943--5472974
5
6.6
5
92
7
57
18
0
0
81
0.70
5472943--5472973
9
3.3
9
91
8
53
19
0
0
80
0.71
5473532--5475023
144
9.7
158
81
9
1585
35
12
11
40
1.79
5473532--5475045
310
4.9
309
80
9
1583
35
13
10
40
1.79
5473715--5475023
161
8.5
152
80
9
1026
35
12
11
40
1.79
5474551--5475053
162
3.1
160
83
7
594
34
12
9
42
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318