genome.fa.s2.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  135  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41318003--41318120	55	2.2	53	83	8	150	40	13	24	21	1.89
41318218--41318339	28	4.3	28	80	2	127	15	13	24	46	1.81
41320668--41320770	29	3.6	28	80	5	116	29	33	16	21	1.95
41327497--41327540	20	2.2	20	95	0	79	31	15	11	40	1.83
41328051--41329167	561	2.0	559	98	0	2173	33	12	18	35	1.88
41329901--41330076	46	3.8	46	79	12	216	20	21	29	28	1.98
41329898--41330069	93	1.8	93	96	0	317	20	21	29	27	1.98
41338773--41338874	29	3.5	29	90	0	150	27	15	33	23	1.95
41346631--41346732	29	3.5	29	90	0	150	27	15	33	23	1.95
41352283--41352427	43	3.4	42	83	8	161	33	26	17	22	1.96
41353504--41353548	20	2.3	20	85	11	58	68	0	11	20	1.19
41353200--41354241	545	1.9	540	81	6	1145	36	9	18	35	1.83
41356290--41356413	39	3.2	39	90	0	194	22	21	29	26	1.99
41357163--41357206	19	2.2	20	80	15	56	25	15	15	43	1.87
41357336--41357380	6	7.7	6	80	14	58	20	0	2	77	0.87
41357336--41357380	11	3.9	11	88	11	72	20	0	2	77	0.87
41357332--41357391	24	2.5	24	94	2	102	18	0	8	73	1.08
41358843--41358988	40	3.7	40	90	3	206	26	24	26	22	2.00
41361040--41361137	39	2.5	40	83	5	137	26	23	29	20	1.99
41362020--41362187	40	4.2	40	78	1	149	23	27	23	26	2.00
41362036--41362185	80	1.9	80	83	5	196	22	27	24	26	1.99
41369308--41369476	40	4.2	40	83	1	187	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373352--41373418	27	2.5	27	92	4	109	19	10	25	44	1.82
41379263--41379360	28	3.5	28	84	4	108	29	16	24	29	1.96
41386941--41387038	28	3.5	28	84	4	108	29	16	24	29	1.96
41388614--41388720	40	2.7	41	84	5	130	23	27	26	23	2.00
41389481--41389505	2	12.5	2	100	0	50	52	0	0	48	1.00
41399919--41399943	2	12.5	2	100	0	50	52	0	0	48	1.00
41403261--41403405	27	5.4	27	88	0	209	24	22	18	34	1.96
41408623--41408789	40	4.2	40	78	6	160	25	22	27	24	2.00
41416631--41416797	40	4.2	40	78	6	160	25	22	27	24	2.00
41423443--41423584	43	3.3	42	77	8	119	26	18	24	30	1.98
41424351--41424393	22	2.0	22	86	9	61	23	2	25	48	1.62
41429516--41429733	40	5.5	40	90	4	327	23	23	27	24	2.00
41431085--41431194	43	2.6	43	84	4	134	24	18	27	30	1.98
41450403--41450531	40	3.3	39	82	7	111	23	26	25	24	2.00
41450438--41450584	78	1.9	80	85	5	210	24	27	23	24	2.00
41450419--41450584	40	4.2	37	77	9	125	24	27	24	24	2.00
41458470--41458598	40	3.3	39	82	7	111	23	26	25	24	2.00
41458505--41458651	78	1.9	80	85	5	210	24	27	23	24	2.00
41458486--41458651	40	4.2	37	77	9	125	24	27	24	24	2.00
41463409--41463433	9	2.8	9	100	0	50	36	12	0	52	1.39
41465655--41465950	27	11.0	27	84	2	337	41	20	6	31	1.78
41465664--41465950	54	5.3	54	87	1	389	41	20	6	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41465664--41465952	81	3.6	81	85	1	384	41	20	6	31	1.78
41465881--41466131	27	9.3	27	87	2	283	36	20	17	25	1.94
41466477--41466536	22	2.7	22	76	5	59	20	26	25	28	1.99
41466694--41466758	27	2.4	27	79	5	69	20	21	23	35	1.96
41466924--41467047	6	19.8	6	67	19	58	20	19	13	46	1.83
41466901--41467038	31	4.5	31	84	8	158	19	18	12	49	1.79
41466961--41467029	27	2.6	27	93	4	115	20	23	11	44	1.83
41468812--41469002	40	4.8	39	78	7	172	23	28	24	24	1.99
41468852--41469002	78	1.9	80	85	5	209	23	28	23	25	1.99
41476837--41477027	40	4.8	39	78	7	172	23	28	24	24	1.99
41476877--41477027	78	1.9	80	85	5	209	23	28	23	25	1.99
41484151--41484260	28	4.0	28	90	2	152	36	20	24	18	1.95
41484367--41484424	26	2.2	26	84	6	73	27	10	24	37	1.88
41493570--41493650	33	2.4	34	77	8	94	28	18	23	29	1.98
41493570--41493663	32	2.9	30	73	12	71	26	20	25	27	1.99
41504501--41504673	93	1.9	93	93	0	301	27	30	21	20	1.98
41504494--41504672	46	3.9	46	82	10	220	27	30	21	20	1.98
41511328--41511513	49	3.8	48	84	3	246	24	17	28	29	1.98
41511317--41511501	99	1.9	99	94	2	327	24	17	29	28	1.97
41514540--41514567	2	14.0	2	100	0	56	50	0	0	50	1.00
41519232--41519278	17	2.7	17	83	12	51	29	2	14	53	1.53
41526101--41527157	539	2.0	519	94	3	1555	35	14	20	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41528567--41529081	270	1.9	270	93	0	888	38	21	13	26	1.90
41533482--41533535	22	2.5	22	96	0	99	46	22	9	22	1.80
41543915--41543948	12	2.8	12	95	0	59	23	0	5	70	1.09
41544201--41544240	16	2.6	16	81	18	57	67	5	0	27	1.11
41544503--41544559	29	2.0	28	86	3	78	57	7	0	35	1.26
41546375--41546549	38	4.6	38	90	0	206	34	28	18	18	1.95
41546428--41546538	22	5.6	22	63	23	75	35	29	18	17	1.93
41546369--41546549	76	2.4	76	82	0	227	34	28	17	18	1.94
41547934--41548144	108	2.0	108	91	0	341	23	29	29	17	1.97
41549251--41549378	42	3.0	42	77	6	134	28	25	17	28	1.98
41551826--41551857	16	2.0	16	100	0	64	31	6	0	62	1.20
41552226--41552276	23	2.3	23	87	9	72	23	1	27	47	1.63
41558800--41558904	29	3.6	29	77	2	86	25	33	17	23	1.96
41558838--41558960	58	2.1	59	86	3	169	24	30	15	29	1.96
41558859--41558960	29	3.5	29	93	0	177	25	29	14	30	1.95
41566780--41566884	29	3.6	29	77	2	86	25	33	17	23	1.96
41566818--41566940	58	2.1	59	87	3	178	25	30	15	28	1.96
41566839--41566940	29	3.5	29	95	0	186	26	29	14	29	1.95
41569057--41569100	23	1.9	23	90	0	70	54	11	2	31	1.48
41569057--41569106	23	2.1	23	85	3	64	54	14	2	30	1.51
41569755--41569799	21	2.1	21	91	0	72	26	4	15	53	1.61
41573517--41573571	10	5.2	10	77	12	56	72	1	7	18	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41574200--41574575	152	2.5	151	86	3	515	41	10	5	42	1.61
41575176--41575252	22	3.5	22	96	0	145	16	31	40	11	1.85
41578191--41578221	16	1.9	16	100	0	62	51	3	19	25	1.62
41578228--41578716	42	11.3	42	79	8	439	38	22	18	20	1.93
41578346--41578376	16	1.9	16	93	0	53	54	9	16	19	1.68
41578229--41578507	142	2.0	142	92	2	463	41	20	16	21	1.90
41578262--41578465	100	2.0	100	81	5	234	42	18	16	22	1.89
41578362--41578712	126	2.8	126	86	3	510	37	23	19	19	1.94
41587215--41587253	19	2.1	19	85	0	51	71	7	5	15	1.26
41587713--41587801	28	3.2	27	84	7	108	32	22	24	20	1.98
41587907--41587971	28	2.3	28	91	0	103	32	7	27	32	1.85
41595062--41595100	19	2.1	19	85	0	51	71	7	5	15	1.26
41595564--41595652	27	3.2	26	87	7	115	32	23	23	20	1.98
41595758--41595822	28	2.3	28	94	0	112	30	7	27	33	1.85
41602588--41602664	37	2.1	37	97	0	145	32	12	11	42	1.80
41604013--41604077	4	16.5	4	72	15	55	52	1	21	24	1.56
41607615--41607658	3	14.7	3	100	0	88	31	0	0	68	0.90
41611763--41612017	55	4.8	54	81	7	256	21	25	17	36	1.95
41611810--41612007	108	1.8	110	89	4	312	22	25	17	33	1.96
41615055--41615133	25	3.3	25	66	16	67	31	30	5	32	1.79
41615019--41615405	49	8.0	49	94	1	638	30	31	8	29	1.87
41621291--41621369	25	3.3	25	66	16	67	31	30	5	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41621255--41621592	49	7.0	49	94	2	549	29	31	8	30	1.87
41624283--41624511	24	9.6	24	94	1	363	21	19	25	34	1.96
41624283--41624511	47	4.8	47	93	1	368	21	19	25	34	1.96
41630238--41630265	13	2.2	13	100	0	56	39	0	46	14	1.44
41632058--41632204	24	6.2	24	94	4	264	21	20	25	33	1.97
41632058--41632191	69	1.9	70	98	1	261	20	20	26	33	1.97
41634304--41634690	40	9.7	40	90	0	526	25	21	28	24	1.99
41636747--41636879	69	1.9	70	92	1	223	32	13	17	36	1.89
41638196--41638448	47	5.4	47	91	0	380	35	8	28	28	1.86
41644499--41644563	34	1.9	34	83	0	85	24	26	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318