genome.fa.s2.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  118  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36129170--36129207	19	2.0	20	85	15	53	36	0	23	39	1.55
36134255--36134416	29	5.6	29	87	1	209	25	32	16	25	1.96
36142206--36142367	29	5.6	29	87	1	209	25	32	16	25	1.96
36148534--36148625	42	2.2	42	88	0	139	18	25	33	22	1.97
36150627--36150756	46	2.8	45	78	6	145	28	28	20	23	1.98
36156108--36156149	2	21.0	2	90	0	66	52	2	0	45	1.13
36166730--36166799	28	2.6	27	93	6	115	31	27	14	27	1.95
36170799--36170945	43	3.5	42	83	3	152	25	14	23	35	1.94
36170850--36170961	43	2.6	41	79	8	109	27	16	24	32	1.96
36173754--36173792	20	2.0	20	84	0	51	12	5	33	48	1.63
36175710--36175762	20	3.0	17	77	17	54	50	1	0	47	1.12
36175759--36175801	17	2.5	17	80	3	50	46	4	4	44	1.45
36178881--36178913	16	2.1	15	94	5	57	75	0	6	18	1.00
36183278--36183314	19	1.9	19	94	0	65	35	13	21	29	1.92
36186600--36186768	43	4.0	43	67	20	104	28	29	17	24	1.97
36188363--36188407	22	2.0	22	95	0	81	28	22	15	33	1.95
36188691--36189010	160	2.0	160	97	0	604	31	18	17	32	1.94
36190624--36190721	28	3.5	28	84	4	108	29	16	24	29	1.96
36198152--36198249	28	3.5	28	84	4	108	29	16	24	29	1.96
36201062--36201269	48	4.4	48	72	12	160	26	20	25	27	1.99
36203504--36203609	38	2.9	35	69	13	88	30	22	17	29	1.97
36203511--36203619	35	3.0	35	69	12	94	30	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36203504--36203639	73	1.9	73	85	3	193	30	22	18	28	1.97
36206282--36206457	46	3.8	46	78	10	205	19	20	30	28	1.97
36206278--36206450	93	1.9	93	93	0	301	20	20	31	27	1.98
36208387--36208440	27	2.0	27	92	0	90	38	20	12	27	1.89
36209481--36209530	4	12.5	4	82	0	55	46	0	52	2	1.12
36209481--36209530	6	8.3	6	77	0	55	46	0	52	2	1.12
36210858--36210884	13	2.1	13	100	0	54	55	0	14	29	1.40
36214267--36214328	31	2.0	31	100	0	124	29	16	22	32	1.95
36215499--36215541	21	2.0	21	82	8	52	62	13	11	11	1.54
36218040--36218090	25	2.0	26	92	3	86	49	33	7	9	1.65
36221453--36221478	12	2.2	12	100	0	52	7	30	42	19	1.79
36223793--36223879	37	2.3	36	94	5	147	26	33	19	20	1.97
36223948--36224247	49	6.1	49	98	0	537	29	27	10	34	1.89
36227083--36227221	40	3.5	40	83	8	158	25	25	24	25	2.00
36227965--36228316	40	8.8	40	92	0	560	27	26	18	27	1.98
36230197--36230269	37	2.0	37	100	0	146	24	32	20	21	1.97
36230352--36230797	49	9.1	49	95	0	759	29	26	9	34	1.88
36234432--36234456	13	1.9	13	100	0	50	28	32	32	8	1.86
36237032--36237162	47	2.8	48	88	1	183	24	15	26	33	1.95
36238663--36238914	137	1.8	137	88	0	387	30	25	22	22	1.99
36240569--36240641	29	2.5	29	75	4	76	20	35	21	21	1.96
36240628--36240700	29	2.6	29	93	2	130	27	30	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36246014--36246178	40	4.2	40	89	2	244	23	20	27	28	1.99
36246007--36246178	79	2.2	79	86	5	249	24	20	26	28	1.99
36254125--36254158	17	2.1	16	88	5	50	76	14	0	8	1.01
36255869--36255900	14	2.3	14	94	0	55	34	0	3	62	1.11
36257587--36257655	9	7.4	9	73	9	50	57	1	4	36	1.27
36270947--36271094	43	3.4	44	80	3	167	31	14	21	33	1.93
36281125--36281398	136	2.0	136	97	0	521	32	11	17	38	1.86
36283723--36283749	7	3.9	7	100	0	54	88	0	0	11	0.50
36284536--36284603	35	2.0	35	88	8	104	42	2	0	54	1.15
36284789--36284828	2	20.5	2	84	5	55	47	2	0	50	1.14
36285567--36285591	2	12.5	2	100	0	50	52	0	0	48	1.00
36286784--36286835	24	2.1	25	82	10	63	34	1	13	50	1.53
36287204--36287253	24	2.1	24	100	0	100	60	4	0	36	1.16
36290021--36290094	29	2.6	29	95	0	139	27	14	31	27	1.95
36290078--36290152	28	2.6	28	78	2	87	22	20	36	21	1.96
36290021--36290152	58	2.3	57	80	3	131	25	17	33	24	1.96
36303528--36303686	29	5.5	29	82	5	171	25	31	16	26	1.97
36305983--36306188	40	5.2	40	91	2	326	24	21	25	29	1.99
36305968--36306188	80	2.8	80	93	2	365	25	21	24	28	1.99
36312669--36312696	13	2.2	13	100	0	56	28	0	14	57	1.38
36314114--36314319	40	5.2	40	92	2	344	24	22	25	28	1.99
36319206--36319372	43	3.9	43	77	8	162	34	24	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36319206--36319369	86	1.9	85	80	8	190	34	24	14	26	1.94
36321846--36321900	21	2.6	21	82	5	58	23	34	27	14	1.94
36324129--36324184	28	2.0	28	89	0	85	33	17	14	33	1.90
36332401--36332561	30	5.5	30	86	7	204	28	25	14	31	1.95
36332459--36332561	28	3.6	28	85	6	109	27	27	14	31	1.95
36334977--36335023	24	2.0	23	87	4	67	29	23	27	19	1.98
36337009--36337046	20	1.9	20	88	0	58	39	23	23	13	1.90
36339881--36339922	20	2.1	20	95	0	75	9	7	23	59	1.53
36342876--36342939	13	4.9	13	78	0	74	29	6	26	37	1.81
36342876--36342940	26	2.5	26	79	2	85	30	6	26	36	1.81
36344695--36344740	21	2.2	20	88	7	74	32	0	13	54	1.39
36346002--36346072	29	2.5	30	84	9	103	60	2	4	32	1.30
36346146--36346183	19	2.0	19	89	0	58	50	13	10	26	1.73
36346598--36346728	10	13.8	10	72	18	68	56	0	3	38	1.23
36346577--36346737	37	4.3	36	72	17	112	53	1	3	41	1.27
36346590--36346737	29	5.3	27	74	11	84	54	0	3	41	1.22
36346590--36346662	29	2.5	31	82	10	91	56	0	1	42	1.08
36346590--36346739	38	4.0	37	74	15	130	55	0	3	40	1.21
36347325--36347426	10	9.9	10	75	15	84	36	3	1	57	1.28
36347306--36347369	9	6.6	9	76	15	56	32	1	0	65	1.02
36347323--36347423	20	4.9	20	80	10	96	35	3	1	58	1.28
36347325--36347371	9	4.9	9	82	12	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36347514--36347574	21	3.1	20	75	17	65	27	3	1	67	1.16
36347514--36347574	19	3.1	19	74	25	56	27	3	1	67	1.16
36351118--36351146	14	2.1	14	93	6	51	37	31	3	27	1.73
36355229--36355258	14	2.1	14	93	0	51	46	0	0	53	1.00
36360266--36360450	40	4.6	39	85	4	217	28	22	25	23	2.00
36360265--36360471	80	2.6	80	83	4	247	26	22	26	25	2.00
36360264--36360471	40	5.2	39	83	5	211	26	22	25	25	2.00
36362058--36362097	21	1.9	21	100	0	80	17	0	35	47	1.48
36365773--36365995	46	4.7	46	76	14	181	24	31	17	25	1.97
36368515--36368584	27	2.5	28	97	2	133	28	12	27	31	1.93
36376443--36376512	27	2.5	28	90	2	115	27	12	30	30	1.93
36376443--36376524	27	3.0	27	78	8	85	28	14	26	30	1.95
36379679--36379780	29	3.5	29	95	0	186	29	14	29	26	1.95
36379679--36379840	29	5.6	29	84	2	107	26	16	32	25	1.96
36379675--36379801	58	2.2	59	85	4	179	29	14	30	25	1.95
36379873--36379903	2	15.5	2	100	0	62	48	0	0	51	1.00
36392326--36392353	14	2.0	14	100	0	56	35	21	7	35	1.81
36409616--36409666	13	4.3	11	85	14	66	50	1	0	47	1.12
36409616--36409666	24	2.1	24	92	0	84	50	1	0	47	1.12
36409766--36409822	15	3.5	15	71	17	51	47	3	1	47	1.29
36417283--36417408	40	3.2	40	91	1	200	23	20	27	28	1.99
36424092--36424161	27	2.5	28	86	2	97	27	14	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36429476--36429657	40	4.6	40	83	4	181	23	26	22	28	1.99
36437582--36437749	40	4.2	40	80	5	173	23	26	21	28	1.99
36442671--36442731	30	2.0	30	100	0	122	36	22	13	27	1.92
36449882--36449940	30	2.0	30	93	0	100	32	22	16	28	1.96
36459322--36459368	22	2.1	22	84	0	58	8	25	31	34	1.86
36461429--36461497	28	2.5	28	95	2	122	43	27	10	18	1.82
36462957--36462999	13	3.3	13	81	12	61	25	0	6	67	1.15
36463920--36464058	49	2.8	50	81	6	156	46	15	9	28	1.76
36467600--36467630	16	1.9	16	93	0	53	0	25	0	74	0.82
36468397--36468429	14	2.3	15	89	5	50	33	15	0	51	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318