Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  126  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38819839--38819897
20
3.0
20
92
0
100
37
11
20
30
1.89
38819948--38820042
24
4.0
24
85
10
124
28
21
24
26
1.99
38819949--38820042
47
2.0
49
85
12
133
27
21
24
26
1.99
38820234--38820396
38
4.4
38
84
11
232
38
17
22
22
1.93
38820258--38820373
31
3.5
31
80
15
142
41
14
20
23
1.89
38820234--38820373
69
2.0
69
98
0
271
39
15
21
23
1.92
38828104--38828151
25
1.9
25
86
0
69
33
25
16
25
1.96
38828195--38828253
20
3.0
20
92
0
100
37
11
20
30
1.89
38828304--38828397
23
4.0
24
87
8
131
28
21
23
26
1.99
38828305--38828397
47
2.0
48
87
10
138
27
21
23
26
1.99
38828589--38828750
38
4.4
38
83
12
223
38
17
22
22
1.93
38828613--38828727
31
3.5
31
78
17
133
41
14
20
23
1.89
38828593--38828727
68
2.0
68
98
0
261
38
16
20
24
1.92
38830387--38830536
67
2.2
67
81
8
171
32
17
28
21
1.96
38830411--38830594
67
2.8
64
77
8
194
29
17
29
22
1.97
38831680--38831714
2
17.5
2
93
0
61
48
2
0
48
1.16
38833231--38833327
30
3.2
31
71
8
85
29
16
26
26
1.97
38835109--38835167
23
2.6
22
76
10
57
11
23
0
64
1.27
38835242--38835308
5
13.0
5
74
22
59
2
16
2
77
1.01
38836206--38836258
11
4.7
12
90
9
69
16
3
7
71
1.24
38836220--38836257
10
3.7
10
96
3
67
15
2
7
73
1.17
38836205--38836258
10
4.7
12
81
13
53
16
3
7
72
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38837882--38837979
30
3.3
30
75
0
97
29
16
26
27
1.97
38838426--38838556
67
2.0
65
80
14
146
39
16
9
35
1.80
38839501--38839532
14
2.3
14
94
0
55
40
0
34
25
1.56
38840575--38840670
30
3.2
30
71
10
90
27
29
15
28
1.96
38842289--38842322
1
34.0
1
87
0
50
94
2
2
0
0.38
38843204--38843271
21
3.2
20
80
12
66
76
0
17
5
0.98
38843215--38843271
5
11.0
5
77
17
55
77
0
17
5
0.95
38843215--38843271
16
3.7
14
80
17
60
77
0
17
5
0.95
38843312--38843342
12
2.6
12
100
0
62
45
12
16
25
1.83
38843345--38843369
12
2.1
12
100
0
50
76
0
16
8
1.02
38843339--38843394
18
3.1
18
76
5
51
69
3
19
7
1.27
38843345--38843426
30
2.7
31
81
5
105
64
1
21
12
1.33
38845515--38845611
30
3.2
31
73
5
101
27
28
15
27
1.96
38846146--38846178
17
1.9
17
100
0
66
30
24
12
33
1.91
38847277--38847354
30
2.6
30
72
8
77
28
25
17
28
1.98
38848146--38848190
14
3.3
14
78
6
56
35
0
15
48
1.45
38849174--38849221
15
3.3
15
73
5
53
43
27
0
29
1.55
38851664--38851726
11
5.6
11
76
16
67
74
6
4
14
1.18
38851663--38851727
23
2.9
23
86
10
91
72
6
6
15
1.25
38855625--38855656
11
2.6
13
90
9
50
75
9
6
9
1.20
38865206--38865245
19
2.1
19
85
0
53
25
35
17
22
1.95
38871486--38871581
30
3.2
31
73
5
99
28
29
15
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38871935--38871974
19
2.1
19
85
0
53
25
35
17
22
1.95
38874959--38875024
13
5.5
12
85
8
82
71
7
4
16
1.26
38874959--38875023
23
2.8
22
84
13
85
70
7
4
16
1.28
38874959--38875024
25
2.7
25
86
9
84
71
7
4
16
1.26
38877184--38877280
30
3.2
30
76
2
106
27
16
27
27
1.97
38877682--38877726
17
2.7
17
90
10
67
77
2
17
2
0.97
38877697--38877729
9
3.8
9
84
8
50
78
3
18
0
0.87
38877693--38877748
15
3.7
14
82
17
60
76
1
17
3
1.01
38877682--38877752
31
2.3
33
79
16
80
74
1
19
4
1.06
38877976--38878060
30
2.8
30
76
0
98
28
25
17
28
1.98
38878403--38878485
30
2.8
30
70
7
87
27
28
16
26
1.97
38877804--38878656
425
2.0
426
97
0
1609
29
23
14
32
1.94
38879931--38879961
12
2.6
12
100
0
62
45
12
16
25
1.83
38879964--38879988
12
2.1
12
100
0
50
76
0
16
8
1.02
38879958--38880013
18
3.1
18
76
5
51
69
3
19
7
1.27
38879964--38880045
30
2.7
31
81
5
105
64
1
21
12
1.33
38882154--38882249
30
3.2
30
76
1
104
27
28
16
28
1.97
38882550--38882646
30
3.2
30
75
5
99
27
27
17
26
1.98
38884126--38884150
12
2.1
12
100
0
50
76
0
16
8
1.02
38884120--38884175
18
3.1
18
76
5
51
69
3
19
7
1.27
38884126--38884207
30
2.7
31
81
5
105
64
1
21
12
1.33
38893119--38893215
30
3.2
30
76
2
106
27
16
27
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38895413--38895465
26
2.1
25
85
3
70
41
15
7
35
1.75
38896343--38896391
18
2.7
18
87
6
64
38
8
4
48
1.52
38899485--38899519
12
2.9
12
84
16
54
2
22
0
74
0.95
38899473--38899518
19
2.3
20
78
14
51
4
21
2
71
1.14
38899485--38899535
24
2.1
24
85
7
68
7
17
0
74
1.05
38905935--38906109
40
4.4
40
90
0
269
28
28
20
22
1.99
38908218--38908315
30
3.3
30
72
4
90
27
26
16
29
1.97
38909973--38910030
13
4.5
13
85
8
75
79
5
3
12
1.02
38909986--38910031
12
3.8
12
83
11
58
76
4
4
15
1.11
38909973--38910030
25
2.3
26
91
8
93
79
5
3
12
1.02
38910945--38911001
11
5.5
10
73
22
55
77
1
17
3
1.00
38910934--38911001
21
3.2
20
80
12
66
76
2
17
2
1.04
38910945--38911001
5
11.0
5
77
17
55
77
1
17
3
1.00
38910945--38911001
16
3.7
14
80
17
60
77
1
17
3
1.00
38911048--38911078
12
2.6
12
94
0
53
45
9
16
29
1.79
38911081--38911105
12
2.1
12
100
0
50
76
0
16
8
1.02
38911075--38911130
18
3.1
18
76
5
51
69
3
19
7
1.27
38911081--38911162
30
2.7
31
81
5
105
64
1
21
12
1.33
38913373--38913470
30
3.3
30
72
4
90
27
26
16
29
1.97
38917298--38917332
10
3.5
10
88
0
52
37
22
25
14
1.92
38919853--38920023
93
1.8
93
88
0
261
28
29
19
22
1.98
38919845--38920020
46
3.8
46
76
12
171
29
28
18
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38922280--38922325
18
2.5
19
75
13
51
58
6
0
34
1.24
38922631--38922670
19
2.1
19
85
0
53
25
35
17
22
1.95
38924240--38924284
10
4.5
10
91
0
63
37
22
24
15
1.93
38925861--38925899
18
2.1
19
85
4
53
7
23
2
66
1.30
38925917--38925965
18
2.8
18
84
3
64
14
26
0
59
1.36
38925892--38925972
24
3.4
24
75
1
92
12
25
0
61
1.31
38925969--38926065
42
2.3
42
89
1
142
14
22
5
57
1.57
38927067--38927102
16
2.2
16
90
5
54
30
8
8
52
1.61
38930023--38930070
14
3.4
14
80
11
53
18
29
6
45
1.74
38930210--38930244
10
3.5
10
88
0
52
37
22
25
14
1.92
38930207--38930254
20
2.4
20
75
0
60
31
18
29
20
1.97
38930981--38931020
14
2.9
14
88
0
53
50
7
32
10
1.64
38935423--38935449
10
2.7
10
100
0
54
40
29
11
18
1.85
38935423--38935471
10
4.8
10
85
5
53
36
32
8
22
1.84
38942650--38942746
30
3.2
30
73
2
97
26
27
16
28
1.97
38944431--38944511
41
2.0
41
83
11
103
70
7
6
16
1.31
38944451--38944512
21
3.0
21
69
9
56
72
6
6
14
1.25
38945432--38945488
11
5.5
10
73
22
55
77
1
17
3
1.00
38945421--38945488
21
3.2
20
80
12
66
76
2
17
2
1.04
38945432--38945488
5
11.0
5
77
17
55
77
1
17
3
1.00
38945432--38945488
16
3.7
14
80
17
60
77
1
17
3
1.00
38945536--38945566
12
2.6
12
100
0
62
45
12
16
25
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38945569--38945650
30
2.7
30
78
10
87
64
1
20
13
1.34
38947745--38947841
30
3.2
30
75
2
97
28
27
15
27
1.96
38948928--38948975
15
3.3
15
73
5
53
29
0
27
43
1.55
38948922--38948965
14
3.1
14
74
6
52
27
0
34
38
1.57
38948922--38948981
29
2.1
29
93
0
102
28
0
30
41
1.56
38950594--38950630
18
2.0
19
89
5
58
8
27
2
62
1.37
38950650--38950699
18
2.8
18
87
0
73
14
28
0
58
1.37
38950626--38950702
24
3.2
24
79
0
91
12
28
0
58
1.35
38951697--38951748
25
2.1
25
89
7
79
17
5
5
71
1.26
38952904--38952949
14
3.4
14
78
6
58
50
15
0
34
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318