genome.fa.s2.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  115  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35253768--35253815	24	2.0	24	83	0	60	54	25	2	18	1.55
35258247--35258287	21	2.0	20	90	4	64	75	0	21	2	0.92
35261126--35261226	28	3.5	28	86	6	114	29	13	26	29	1.94
35269070--35269168	28	3.4	28	86	6	110	30	13	26	30	1.94
35271378--35271481	53	2.0	53	90	0	163	26	18	17	37	1.93
35279244--35279269	4	6.5	4	100	0	52	23	0	0	76	0.78
35279297--35279355	31	1.9	31	96	0	109	13	5	38	42	1.66
35280302--35280391	29	3.1	28	87	7	128	28	13	27	30	1.94
35282788--35282815	8	3.5	8	100	0	56	10	10	28	50	1.71
35290998--35291096	42	2.3	42	81	5	119	33	22	17	27	1.96
35295190--35295224	11	3.0	11	84	15	52	22	0	0	77	0.78
35296334--35296453	48	2.5	48	91	0	195	26	26	9	37	1.86
35296424--35296483	30	2.0	30	96	0	111	25	23	11	40	1.88
35296334--35296579	126	2.0	126	93	0	420	28	26	8	36	1.86
35296378--35296531	78	2.0	78	93	0	263	27	25	9	37	1.87
35296452--35296953	48	10.5	48	93	0	833	30	27	6	35	1.83
35301656--35301834	40	4.4	40	82	3	198	26	24	25	24	2.00
35301656--35301834	80	2.2	81	85	3	236	26	24	25	24	2.00
35301690--35301874	80	2.3	80	79	6	196	28	23	24	23	1.99
35301777--35301860	40	2.1	40	82	4	98	26	27	26	20	1.99
35309233--35309411	40	4.4	40	81	0	187	26	22	25	25	2.00
35309233--35309411	80	2.2	81	83	1	225	26	22	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35309354--35309437	40	2.1	40	82	4	98	26	27	26	20	1.99
35309267--35309451	80	2.3	80	80	4	196	28	22	23	24	1.99
35318159--35318242	25	3.4	24	82	6	89	26	21	22	29	1.99
35318172--35318241	25	2.8	25	91	0	104	25	21	25	27	1.99
35318401--35318463	26	2.4	27	72	5	65	36	23	20	19	1.95
35318442--35318668	27	8.5	26	84	7	235	25	20	17	36	1.94
35318442--35318661	54	4.1	54	86	2	284	25	20	18	35	1.95
35318442--35318662	81	2.7	81	85	3	286	26	20	18	35	1.95
35318648--35318774	54	2.4	54	91	2	202	27	7	22	42	1.79
35318648--35318775	27	4.7	27	83	3	168	27	7	23	42	1.80
35318685--35318966	54	5.3	52	82	3	152	37	7	21	34	1.81
35318776--35319029	27	9.4	27	88	0	328	41	7	21	29	1.81
35327506--35327532	12	2.2	12	100	0	54	66	0	0	33	0.92
35328506--35328544	16	2.4	16	91	0	60	15	23	28	33	1.95
35328525--35328599	38	2.0	38	86	5	107	20	18	22	38	1.93
35328576--35328621	22	2.1	22	91	0	74	23	13	26	36	1.91
35328550--35328668	60	2.0	60	91	3	195	21	15	26	37	1.92
35332652--35332761	40	2.8	40	85	0	148	23	26	23	26	2.00
35340706--35340815	40	2.8	40	85	0	148	23	26	23	26	2.00
35349131--35349294	84	2.0	84	82	4	206	31	26	16	25	1.96
35349136--35349303	43	4.0	43	75	9	173	32	26	16	25	1.96
35356307--35356536	46	5.0	46	95	0	370	22	23	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35358679--35358719	3	13.7	3	100	0	82	65	0	0	34	0.93
35365164--35365365	55	3.8	52	75	11	153	35	16	25	22	1.95
35365434--35365480	23	2.0	24	87	4	69	46	10	21	21	1.81
35368763--35368863	28	3.5	29	86	6	125	29	27	13	28	1.95
35382455--35382638	40	4.6	39	75	6	138	26	23	27	22	2.00
35382495--35382683	80	2.4	81	77	4	186	23	24	29	22	1.99
35395708--35395810	29	3.6	27	81	5	98	29	33	16	21	1.95
35399774--35400020	50	4.9	50	79	3	271	29	25	19	25	1.98
35399774--35400018	101	2.4	100	80	2	267	29	25	19	25	1.98
35399777--35400063	151	1.9	150	83	2	367	31	25	18	24	1.97
35403035--35403123	43	2.1	43	100	0	178	34	16	8	39	1.80
35406216--35406567	180	2.0	180	87	2	519	32	20	9	37	1.85
35407087--35407330	50	4.8	50	81	6	269	31	23	17	27	1.97
35417899--35418082	40	4.6	40	84	9	225	24	22	27	26	2.00
35417899--35418105	79	2.6	79	80	12	237	25	21	26	26	2.00
35424018--35424147	40	3.2	40	80	2	154	25	28	23	23	1.99
35427260--35427430	93	1.8	93	96	0	315	27	29	22	20	1.98
35427252--35427432	46	3.9	46	81	9	233	27	29	21	20	1.98
35429799--35429887	30	3.0	30	80	8	101	57	15	16	10	1.65
35429799--35429878	15	5.4	15	80	7	92	58	13	17	10	1.62
35429810--35429887	15	5.2	15	78	9	79	56	15	16	11	1.67
35432797--35432967	93	1.8	93	96	0	315	27	29	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35432789--35432969	46	3.9	46	81	9	233	27	29	21	20	1.98
35435750--35435812	32	2.0	32	87	0	90	19	15	34	30	1.93
35436783--35436855	36	2.0	36	100	0	146	38	8	13	39	1.75
35442890--35442934	15	3.0	15	90	0	72	13	17	13	55	1.69
35442890--35442948	30	2.0	30	82	0	73	15	18	11	54	1.71
35444952--35444979	9	3.1	9	100	0	56	21	21	10	46	1.81
35449941--35450070	50	2.6	50	84	3	156	26	17	26	30	1.98
35450282--35450311	16	1.9	15	93	6	51	43	0	23	33	1.54
35462611--35462777	40	4.2	40	79	6	169	26	22	26	24	2.00
35470620--35470786	40	4.2	40	78	8	171	26	21	26	25	1.99
35473263--35473412	67	2.2	67	81	8	171	32	17	28	21	1.96
35473287--35473470	67	2.8	64	77	8	194	29	17	29	22	1.97
35479331--35479429	23	4.4	22	75	14	94	57	6	4	32	1.42
35479329--35479418	47	1.9	47	84	8	121	58	5	3	32	1.37
35479699--35479732	3	11.3	3	87	12	52	67	0	0	32	0.91
35479883--35479919	19	2.0	18	94	5	65	62	10	0	27	1.28
35482271--35482572	90	3.4	89	80	9	391	32	18	15	33	1.92
35484455--35484598	40	3.6	39	82	5	171	25	24	25	24	2.00
35492465--35492609	40	3.6	40	85	4	193	26	24	25	23	2.00
35496926--35497012	24	3.6	24	76	3	84	29	28	17	24	1.97
35499283--35499446	71	2.3	71	100	0	328	18	28	17	35	1.94
35499283--35499480	71	2.8	70	91	3	258	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35506821--35506983	70	2.3	71	98	1	319	19	28	17	34	1.94
35506821--35507017	70	2.8	70	90	4	249	20	28	17	33	1.95
35513003--35513181	40	4.4	40	82	3	198	26	24	25	24	2.00
35513003--35513181	80	2.2	81	85	3	236	26	24	25	24	2.00
35513037--35513221	80	2.3	80	79	6	196	28	23	24	23	1.99
35513124--35513207	40	2.1	40	82	4	98	26	27	26	20	1.99
35514835--35514878	18	2.4	18	92	0	70	43	9	27	20	1.82
35515631--35515674	19	2.3	19	85	14	56	50	4	2	43	1.35
35517009--35517085	39	2.0	39	94	0	136	44	12	11	31	1.79
35522537--35522570	15	2.3	15	94	0	59	52	2	11	32	1.53
35526809--35526884	39	1.9	39	97	0	143	46	10	10	32	1.73
35527925--35528001	37	2.1	37	95	2	138	59	5	2	32	1.33
35527944--35528003	18	3.3	18	73	13	68	61	5	1	31	1.27
35527937--35528005	19	3.6	19	73	13	70	62	4	1	31	1.24
35528163--35528212	21	2.4	21	83	6	57	36	2	30	32	1.69
35530012--35530054	22	2.0	21	86	4	59	20	13	6	58	1.59
35532894--35532951	24	2.3	25	88	8	91	37	1	22	37	1.65
35532906--35532955	24	2.1	24	100	0	100	36	0	24	40	1.55
35532911--35532962	24	2.2	24	89	0	77	40	3	25	30	1.73
35537267--35537984	48	15.0	48	91	0	1161	36	7	26	30	1.83
35538029--35538151	37	3.3	37	96	0	228	23	18	33	24	1.97
35541470--35541581	29	3.9	29	79	5	129	24	13	33	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35541470--35541581	57	1.9	57	83	5	145	24	13	33	29	1.93
35546739--35546796	26	2.2	28	78	12	68	70	3	12	13	1.28
35553001--35553059	29	2.0	29	100	0	118	18	16	30	33	1.94
35556842--35556900	30	2.0	30	82	0	73	33	11	23	30	1.91
35557223--35557395	46	3.7	46	78	6	179	29	20	27	22	1.99
35564296--35564340	20	2.2	20	80	7	56	4	13	4	77	1.07
35566971--35567234	47	5.7	45	79	9	228	21	28	20	28	1.98
35569915--35569944	12	2.5	12	94	0	51	23	0	3	73	0.98
35570809--35570858	24	2.1	23	85	3	64	8	22	0	70	1.13
35573644--35574238	47	12.6	47	94	1	1010	33	8	29	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318