genome.fa.s2.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  148  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45272054--45272078	13	1.9	13	100	0	50	0	16	0	84	0.63
45273238--45273290	11	5.0	11	81	6	65	37	13	16	32	1.88
45273238--45273288	21	2.4	21	90	0	75	39	11	15	33	1.84
45273250--45273298	21	2.3	21	96	0	89	34	10	18	36	1.85
45273346--45273416	25	2.8	25	89	4	108	26	22	23	26	2.00
45278084--45278124	21	1.9	22	95	5	75	51	14	0	34	1.43
45283358--45283533	50	3.5	48	83	3	190	26	17	25	30	1.97
45284037--45284069	15	2.2	15	94	0	57	33	12	3	51	1.54
45286276--45286325	15	3.3	15	86	8	66	14	12	18	56	1.68
45305096--45305134	21	1.9	20	84	5	51	28	30	33	7	1.85
45310393--45310460	27	2.5	28	97	2	129	27	13	26	32	1.93
45310393--45310472	27	2.9	27	88	5	81	28	15	23	32	1.95
45315463--45315626	40	4.1	40	79	5	154	25	28	23	21	1.99
45316333--45316360	2	14.0	2	100	0	56	50	0	0	50	1.00
45333720--45333872	40	3.8	39	79	9	157	25	28	23	22	1.99
45339911--45339980	27	2.5	28	97	2	133	28	12	27	31	1.93
45346772--45346831	27	2.3	26	85	2	75	35	20	23	21	1.96
45346878--45346929	27	2.0	26	84	3	68	34	21	26	17	1.95
45348924--45349049	47	2.7	47	85	2	173	26	25	19	28	1.99
45349022--45349146	50	2.5	50	81	1	144	26	32	15	26	1.95
45349019--45349146	49	2.6	49	81	1	148	26	31	15	26	1.96
45349233--45349291	28	2.1	28	100	0	118	23	23	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45354575--45354746	40	4.3	40	80	3	195	26	21	26	26	2.00
45356775--45356809	16	2.2	16	100	0	70	51	8	28	11	1.67
45356921--45356945	11	2.3	11	100	0	50	28	0	0	72	0.86
45356907--45356955	19	2.5	20	80	6	64	34	0	2	63	1.06
45365541--45365579	21	2.0	21	90	10	64	25	12	43	17	1.85
45370254--45370344	37	2.4	37	96	1	164	25	32	18	23	1.97
45370384--45370583	48	4.2	48	97	0	373	32	28	6	33	1.83
45370599--45370634	18	2.0	18	88	0	54	33	22	11	33	1.89
45370496--45370740	122	2.0	123	98	0	474	32	26	8	32	1.87
45370697--45370985	49	5.9	49	93	3	492	29	27	8	33	1.87
45370448--45370789	171	2.0	171	87	5	496	31	27	8	32	1.86
45370697--45370987	96	3.0	98	92	4	441	29	27	8	33	1.87
45370697--45370985	145	2.0	146	93	2	490	29	27	8	33	1.87
45374759--45375058	40	7.6	40	85	6	308	26	28	20	24	1.99
45374759--45374941	40	4.6	40	95	2	316	25	27	21	25	1.99
45374759--45375055	119	2.5	119	80	7	318	26	28	20	24	1.99
45376963--45377051	37	2.4	36	92	5	151	25	31	19	23	1.98
45377091--45377242	48	3.2	48	98	0	286	32	27	6	33	1.83
45377188--45377447	57	4.5	57	72	13	187	31	27	9	31	1.88
45377258--45377293	18	2.0	18	88	0	54	33	22	11	33	1.89
45377155--45377400	123	2.0	123	98	0	474	32	26	8	32	1.87
45377357--45377642	49	5.9	49	94	2	497	29	27	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45377357--45377644	96	3.0	95	93	3	495	29	27	9	33	1.88
45377357--45377642	145	2.0	145	93	2	493	29	27	9	33	1.88
45403993--45404093	28	3.5	30	82	6	118	29	14	26	28	1.95
45404022--45404097	29	2.7	28	76	13	75	30	14	26	28	1.95
45411536--45411720	40	4.6	40	83	4	203	28	22	24	24	1.99
45411536--45411741	80	2.6	80	84	0	241	27	21	25	25	2.00
45411536--45411741	40	5.2	40	81	3	184	27	21	25	25	2.00
45418803--45418924	37	3.3	37	97	0	226	21	33	19	25	1.97
45419026--45419341	49	6.5	49	92	2	514	29	31	9	29	1.88
45419026--45419334	96	3.2	96	95	0	537	29	32	9	29	1.88
45419020--45419341	145	2.2	146	91	3	542	29	31	9	29	1.88
45423743--45423927	40	4.6	39	83	4	208	28	22	25	24	1.99
45423742--45423948	80	2.6	80	83	4	238	26	21	26	25	2.00
45423741--45423948	40	5.2	40	83	4	204	26	21	25	25	2.00
45426496--45426530	2	17.5	2	100	0	70	51	0	0	48	1.00
45432678--45432726	20	2.5	20	86	0	62	30	12	22	34	1.91
45441656--45441724	34	2.0	34	91	0	111	26	5	28	39	1.79
45442154--45442206	26	2.0	26	96	0	97	18	13	28	39	1.88
45446154--45446204	26	2.0	26	88	0	75	25	25	13	35	1.93
45449757--45450024	132	2.0	132	97	2	511	41	9	15	33	1.79
45450056--45450115	29	2.0	30	81	9	70	50	8	15	26	1.72
45454638--45454699	3	20.7	3	100	0	124	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45458267--45458361	44	2.2	42	81	7	102	23	20	24	32	1.98
45463505--45463560	26	2.2	26	100	0	112	23	12	7	57	1.60
45466200--45466262	24	2.6	24	100	0	126	34	26	17	20	1.95
45473433--45473563	30	4.5	30	86	8	171	28	25	13	32	1.94
45473432--45473563	58	2.3	58	85	4	176	28	26	13	31	1.94
45476305--45476413	24	4.6	23	85	7	137	33	23	17	24	1.96
45476305--45476413	48	2.3	48	91	3	175	33	23	17	24	1.96
45480048--45480081	17	2.0	17	100	0	68	29	29	5	35	1.81
45480986--45481066	29	2.8	29	88	0	117	25	30	17	25	1.97
45481139--45481184	19	2.6	18	82	6	58	19	36	21	21	1.95
45481292--45481350	16	3.7	16	81	0	64	10	18	18	52	1.73
45482308--45482339	2	16.0	2	100	0	64	50	0	0	50	1.00
45482731--45482884	80	1.9	80	97	0	290	25	27	24	23	2.00
45482733--45482878	40	3.7	40	85	7	224	24	27	25	22	2.00
45487925--45488027	29	3.5	29	83	12	122	25	26	17	31	1.97
45495845--45495976	29	4.6	29	82	9	137	26	26	15	31	1.96
45501427--45501593	40	4.2	40	79	2	158	23	26	23	26	2.00
45509425--45509591	40	4.2	40	79	2	158	23	26	23	26	2.00
45513171--45513256	38	2.3	38	87	0	127	20	20	25	32	1.97
45513261--45513334	25	3.2	25	60	25	61	20	22	31	25	1.98
45513249--45513556	45	6.9	45	90	2	426	22	22	28	26	1.99
45530794--45530857	24	2.7	24	82	0	83	28	15	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45536972--45537045	29	2.6	29	95	0	139	27	31	14	27	1.95
45536913--45537045	58	2.3	58	80	2	133	24	33	17	24	1.96
45544856--45544929	29	2.6	29	95	0	139	27	31	14	27	1.95
45544797--45544929	58	2.3	58	80	2	133	24	33	17	24	1.96
45548608--45548708	28	3.5	28	86	6	114	29	26	13	29	1.94
45556539--45556639	28	3.5	28	86	6	114	29	26	13	29	1.94
45564482--45564582	28	3.5	28	86	6	114	29	26	13	29	1.94
45573090--45573178	30	3.0	30	80	8	101	57	15	16	10	1.65
45573090--45573169	15	5.4	15	80	7	92	58	13	17	10	1.62
45573101--45573178	15	5.2	15	78	9	79	56	15	16	11	1.67
45587114--45587179	33	2.0	33	90	0	105	33	24	18	24	1.97
45595286--45595525	49	4.8	51	77	8	217	30	26	18	24	1.98
45597529--45597721	68	2.9	68	79	11	168	24	30	17	28	1.97
45602860--45603113	49	5.2	49	93	2	431	33	8	26	30	1.87
45602859--45603113	96	2.6	96	92	3	429	33	8	27	30	1.87
45604425--45604588	71	2.3	71	100	0	328	18	28	17	35	1.94
45604425--45604622	71	2.8	70	91	3	258	20	28	17	33	1.95
45610280--45610428	40	3.8	38	77	11	149	26	24	27	22	2.00
45610279--45610444	78	2.1	79	81	6	194	26	23	27	22	2.00
45618268--45618432	40	4.2	39	75	6	147	26	23	27	23	2.00
45618269--45618416	40	3.8	38	77	12	149	26	23	27	22	1.99
45618268--45618432	78	2.1	78	81	7	192	26	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45624653--45624688	18	2.0	18	88	0	54	33	11	22	33	1.89
45624605--45624743	75	2.0	69	83	12	176	32	9	26	31	1.88
45624704--45624903	48	4.2	48	94	0	355	33	6	28	32	1.83
45624549--45624791	123	2.0	123	98	0	468	32	8	27	32	1.86
45624943--45625033	37	2.4	37	98	1	173	24	18	31	25	1.97
45627431--45627482	15	3.5	15	78	2	61	63	13	11	11	1.52
45627632--45627658	2	13.5	2	100	0	54	48	0	0	51	1.00
45630638--45630862	49	4.6	49	79	4	254	28	24	19	27	1.98
45630681--45630760	24	3.2	25	67	22	60	30	25	17	27	1.97
45630638--45630862	100	2.3	98	82	3	272	28	24	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318