genome.fa.s2.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  54  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15270325--15270372	25	1.9	25	82	0	60	25	14	25	35	1.94
15271532--15271596	27	2.4	27	80	12	80	20	23	20	36	1.95
15271649--15271704	27	2.1	26	83	9	69	39	12	10	37	1.78
15271657--15271795	27	5.0	27	71	14	95	30	8	20	40	1.83
15271774--15272224	27	16.7	27	85	4	554	40	9	22	27	1.85
15279684--15279901	40	5.5	40	89	4	293	25	28	22	22	1.99
15284229--15284279	25	2.0	25	96	0	93	35	21	11	31	1.90
15287265--15287389	6	20.3	6	68	19	71	48	13	19	19	1.81
15287274--15287360	37	2.4	37	86	3	104	49	12	19	18	1.79
15287274--15287360	43	2.2	37	86	12	111	49	12	19	18	1.79
15287291--15287361	19	3.8	19	71	14	67	46	14	21	18	1.83
15287329--15287389	25	2.4	25	88	0	95	45	13	21	19	1.84
15287486--15287573	27	3.3	27	85	3	88	36	19	21	22	1.95
15287506--15287573	27	2.5	27	92	2	118	38	20	20	20	1.94
15287746--15287810	22	3.0	22	82	8	78	32	24	24	18	1.97
15288198--15288521	27	12.0	27	91	0	459	25	20	19	35	1.95
15293489--15293651	39	4.2	39	91	0	254	23	20	32	23	1.98
15293506--15293687	39	4.6	40	87	0	154	22	22	32	22	1.98
15295419--15295460	20	2.1	20	100	0	84	23	57	4	14	1.56
15301423--15301584	39	4.2	39	87	2	227	23	18	32	25	1.97
15304526--15304560	10	3.6	10	84	7	54	48	2	8	40	1.49
15309022--15309067	21	2.2	21	84	7	58	69	8	0	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15310074--15310125	20	2.5	20	73	11	52	48	1	1	48	1.24
15310200--15310277	40	1.9	41	84	2	104	47	3	1	47	1.28
15315774--15315821	18	2.8	17	90	6	71	45	2	2	50	1.25
15317231--15317269	2	19.5	2	100	0	78	48	0	0	51	1.00
15318708--15318767	30	2.0	30	96	0	111	43	11	10	35	1.75
15324252--15324529	138	2.0	138	98	0	538	38	9	20	32	1.84
15324798--15324973	46	3.8	46	79	14	209	20	20	29	29	1.98
15324795--15324966	93	1.8	93	95	2	310	20	20	29	28	1.98
15329218--15329262	22	2.1	22	91	4	74	57	4	17	20	1.56
15331220--15331255	14	2.6	14	86	0	54	75	0	22	2	0.94
15331250--15331313	30	2.1	30	94	0	110	59	7	20	12	1.58
15335571--15335683	58	2.0	58	85	5	158	25	30	14	29	1.95
15335569--15335675	29	3.8	28	80	8	119	25	32	14	27	1.95
15335899--15335929	16	1.9	16	100	0	62	9	25	19	45	1.81
15352297--15352551	43	6.0	42	77	8	248	23	16	26	33	1.95
15352312--15352542	84	2.8	84	87	2	304	24	16	26	31	1.97
15354281--15354328	15	3.1	15	85	5	69	45	18	6	29	1.74
15356091--15356145	24	2.3	25	75	15	62	49	14	10	25	1.76
15356147--15356217	34	2.1	35	85	12	96	39	8	9	42	1.69
15361230--15361266	19	1.9	19	100	0	74	40	16	10	32	1.83
15369975--15370008	17	2.0	17	94	0	59	55	0	5	38	1.24
15370380--15370489	24	4.6	24	83	8	125	20	13	34	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15377396--15377420	7	3.6	7	100	0	50	28	12	0	60	1.32
15382220--15382334	55	2.1	56	82	8	137	34	20	24	20	1.96
15382245--15382334	28	3.2	27	84	7	110	32	22	24	21	1.98
15382245--15382334	27	3.2	27	82	7	101	32	22	24	21	1.98
15382440--15382504	28	2.3	28	94	0	112	30	7	27	33	1.85
15383591--15383638	18	2.6	19	77	9	55	66	2	27	4	1.21
15387274--15387450	88	2.0	88	100	0	354	38	10	12	38	1.77
15393450--15393545	50	1.9	50	91	6	158	27	25	15	32	1.96
15393573--15393668	28	3.6	28	76	11	74	31	20	11	36	1.88
15393610--15393655	24	1.9	24	95	0	83	23	21	13	41	1.88
15400162--15400380	40	5.5	40	91	2	309	25	23	28	23	2.00
15400162--15400380	79	2.8	80	89	2	318	25	23	28	23	2.00
15400162--15400380	119	1.8	119	86	3	316	25	23	28	23	2.00
15405642--15405849	40	5.2	39	80	7	213	25	22	26	25	2.00
15409423--15409501	24	3.3	24	98	0	149	26	37	3	31	1.74
15415434--15415498	34	1.9	34	83	0	85	27	23	21	27	1.99
15415942--15416001	27	2.2	27	93	0	102	15	33	31	20	1.93
15431788--15431819	16	1.9	17	93	6	57	50	9	15	25	1.74
15439281--15439331	24	2.1	24	82	7	59	54	5	11	27	1.59
15439533--15439558	2	13.0	2	100	0	52	50	0	0	50	1.00
15441236--15441540	46	6.6	46	90	0	450	41	14	23	20	1.89
15442981--15443025	20	2.2	20	84	0	54	33	6	15	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15446437--15446600	71	2.3	71	98	0	319	18	27	17	35	1.94
15446437--15446634	71	2.8	70	91	3	258	20	28	17	33	1.95
15451185--15451451	3	88.3	3	76	12	174	64	4	4	25	1.33
15457589--15457635	25	2.0	25	83	8	62	27	14	4	53	1.60
15457912--15458154	46	5.5	46	85	9	326	22	24	15	38	1.92
15458072--15458143	37	1.9	37	100	0	144	23	26	16	33	1.96
15460277--15460359	31	2.7	32	78	12	93	55	4	1	38	1.29
15465264--15465423	28	5.7	28	83	4	146	27	23	12	36	1.91
15470135--15470311	39	4.5	39	87	4	205	25	28	19	25	1.99
15470166--15470305	39	3.6	39	92	0	217	24	28	20	26	1.99
15473067--15473100	2	17.0	2	100	0	68	50	0	0	50	1.00
15477511--15477633	44	2.8	43	88	3	165	32	33	17	16	1.93
15481968--15482002	2	17.5	2	100	0	70	48	0	0	51	1.00
15489558--15489586	2	14.5	2	100	0	58	48	0	0	51	1.00
15490195--15490220	2	13.0	2	100	0	52	50	0	0	50	1.00
15490221--15490361	40	3.5	40	96	0	246	21	18	26	32	1.97
15493287--15493700	50	8.6	50	72	10	278	26	27	17	28	1.98
15493287--15493703	145	2.9	145	79	5	438	26	27	17	28	1.98
15494798--15495128	41	8.1	40	81	5	279	36	25	19	18	1.94
15494847--15495128	41	6.9	41	89	0	402	34	26	19	19	1.96
15495708--15495759	22	2.4	22	80	3	70	26	1	25	46	1.63
15496488--15496535	19	2.5	20	93	6	82	68	4	4	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15496522--15496555	6	5.3	6	89	10	50	76	0	0	23	0.79
15496529--15496553	13	1.9	13	100	0	50	80	0	0	20	0.72
15496529--15496570	15	3.0	14	86	6	50	71	0	4	23	1.05
15496778--15496820	6	7.2	6	94	0	68	0	53	0	46	1.00
15498918--15498958	2	20.5	2	100	0	82	51	0	0	48	1.00
15499234--15499277	13	3.4	13	83	0	61	52	0	0	47	1.00
15499299--15499339	22	1.9	21	85	5	55	43	2	0	53	1.13
15500692--15500837	73	2.0	73	97	0	274	32	13	15	39	1.86
15501546--15501584	20	2.0	20	84	0	51	2	12	10	74	1.17
15502170--15502217	20	2.4	21	82	10	64	22	2	6	68	1.23
15502193--15502225	13	2.4	14	90	5	50	27	0	3	69	1.03
15502362--15502553	43	4.5	43	88	1	278	23	20	28	26	1.99
15502362--15502552	85	2.2	86	89	0	303	24	20	28	26	1.99
15504691--15504791	28	3.5	28	84	4	103	28	13	27	29	1.95
15504720--15504791	29	2.5	29	91	6	112	30	13	26	29	1.94
15511354--15511403	27	1.9	25	84	8	64	76	0	16	8	1.02
15512692--15512792	28	3.5	28	84	4	103	28	13	27	29	1.95
15512721--15512792	29	2.5	29	91	6	112	30	13	26	29	1.94
15517610--15517705	47	2.0	47	91	0	156	40	20	13	25	1.89
15520616--15520654	20	1.9	20	89	5	60	46	7	7	38	1.61
15527246--15527530	48	5.9	48	94	1	500	35	6	27	31	1.82
15527246--15527530	95	3.0	96	95	1	509	35	6	27	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15527258--15527565	143	2.2	142	91	2	456	34	7	27	30	1.84
15527671--15527810	37	3.8	37	96	0	253	23	19	32	25	1.98
15529094--15529541	40	11.3	40	93	1	751	25	19	28	27	1.99
15529572--15529726	28	5.5	28	74	9	107	21	19	27	30	1.98
15529568--15529735	57	2.9	57	86	0	228	23	18	27	30	1.98
15529600--15529701	29	3.6	29	77	7	109	22	17	30	29	1.97
15533259--15533500	48	5.0	48	96	0	430	35	6	27	31	1.81
15533641--15533780	37	3.8	37	96	0	253	23	19	32	25	1.98
15534861--15534924	31	2.1	31	87	0	92	25	21	14	39	1.91
15535133--15535192	26	2.3	26	86	8	79	23	23	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318