genome.fa.s2.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  142  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43482884--43482945	27	2.3	27	94	0	106	33	14	12	38	1.84
43482897--43483289	27	14.7	27	83	2	443	31	11	20	37	1.87
43482897--43483289	53	7.3	54	86	2	472	31	11	20	37	1.87
43483587--43483721	55	2.4	55	86	3	173	28	32	14	24	1.95
43483587--43483721	27	4.9	28	87	3	175	28	32	14	24	1.95
43487827--43487951	52	2.4	52	94	2	214	52	9	21	16	1.71
43489950--43490136	47	4.0	47	90	0	293	33	12	28	25	1.93
43490025--43490100	23	3.2	25	62	24	63	28	14	34	22	1.93
43490302--43490443	37	3.8	37	94	0	239	23	18	33	24	1.96
43494714--43494775	25	2.5	24	80	10	72	74	1	17	6	1.11
43502591--43502636	24	2.0	23	86	4	65	73	2	17	6	1.14
43502602--43502648	19	2.4	20	78	3	51	76	2	17	4	1.04
43503808--43503872	29	2.2	29	94	0	112	30	16	27	24	1.97
43505396--43505504	27	4.1	27	86	1	139	33	14	21	30	1.93
43505459--43505833	27	14.0	27	78	6	197	39	18	10	31	1.85
43505512--43505727	107	2.0	106	80	6	240	40	19	8	31	1.81
43505486--43505850	134	2.7	134	78	8	350	40	19	9	30	1.84
43505561--43505823	107	2.4	106	82	8	300	40	18	9	31	1.82
43505628--43505795	80	2.1	81	81	7	191	41	17	9	30	1.82
43506083--43506201	41	2.9	41	89	0	157	22	19	28	29	1.98
43506348--43506412	22	3.0	22	77	8	78	23	23	18	35	1.96
43510999--43511068	27	2.5	28	86	2	97	32	25	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43511076--43511182	42	2.5	42	96	0	196	22	33	14	28	1.94
43517431--43517506	29	2.6	29	78	0	80	25	35	18	21	1.95
43517490--43517562	29	2.5	29	93	0	128	26	30	15	28	1.96
43517430--43517562	58	2.3	59	81	5	146	24	33	16	25	1.96
43520540--43520762	119	1.9	120	84	6	301	27	27	21	24	1.99
43520521--43520764	40	6.1	40	83	6	282	27	27	21	24	1.99
43521462--43521613	40	3.8	40	77	5	137	27	24	25	22	2.00
43521500--43521629	40	3.3	39	76	11	138	24	24	26	24	2.00
43529268--43529489	39	5.7	40	84	7	260	26	26	22	24	2.00
43529268--43529489	117	1.9	119	84	7	301	26	26	22	24	2.00
43532034--43532079	20	2.3	20	79	17	60	26	15	28	30	1.96
43532074--43532220	60	2.4	62	80	7	142	29	20	23	26	1.99
43534171--43534217	19	2.3	20	82	10	60	36	0	14	48	1.44
43534588--43535088	101	5.0	100	78	5	445	25	16	25	31	1.97
43534643--43535071	50	8.5	50	76	4	371	25	17	25	31	1.97
43534586--43535297	151	4.6	151	80	7	777	25	16	25	32	1.96
43534923--43535239	168	1.9	168	90	0	508	25	17	24	33	1.96
43534845--43535559	268	2.7	268	88	3	1021	25	16	25	32	1.96
43535113--43535339	50	4.5	50	82	2	242	26	14	24	34	1.94
43535164--43535347	100	1.8	100	91	0	305	26	14	26	33	1.95
43535360--43535559	50	4.0	50	76	6	215	25	16	26	31	1.96
43535768--43535799	16	2.0	16	93	0	55	46	0	18	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43537908--43537980	26	2.8	26	93	0	128	27	23	21	27	1.99
43541551--43541647	6	15.8	6	72	16	74	46	13	18	21	1.83
43541535--43541657	31	4.0	31	81	3	142	47	13	17	21	1.81
43541807--43541908	27	3.8	26	84	5	114	37	20	22	19	1.95
43542067--43542131	22	3.0	22	75	8	69	33	21	24	20	1.97
43542584--43542806	27	8.3	27	80	5	175	26	17	19	36	1.94
43542587--43542752	54	3.1	54	82	6	201	24	19	19	35	1.96
43542586--43542752	81	2.1	81	82	2	201	24	19	19	35	1.95
43542710--43542914	54	3.8	54	85	3	254	30	9	20	40	1.84
43542710--43542914	81	2.5	81	78	3	216	30	9	20	40	1.84
43542734--43542914	27	6.7	27	81	1	220	30	8	21	39	1.84
43544855--43544950	6	15.7	6	72	12	70	47	12	16	22	1.80
43544839--43544961	31	4.0	31	80	5	117	49	12	16	21	1.78
43545111--43545212	27	3.8	26	87	5	123	36	20	23	19	1.95
43545371--43545432	22	2.8	23	82	7	74	33	22	22	20	1.97
43545880--43545949	27	2.6	27	83	0	86	27	17	20	35	1.94
43545901--43545983	27	3.1	27	84	10	107	26	15	20	37	1.93
43547296--43547354	30	2.0	30	89	0	91	40	5	25	28	1.77
43547574--43547620	19	2.3	20	82	10	60	36	0	14	48	1.44
43549700--43549829	40	3.2	40	84	4	174	22	24	29	23	1.99
43557693--43557822	40	3.3	39	86	4	181	22	23	29	24	1.99
43559212--43559549	101	3.4	98	74	4	273	26	18	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43559198--43559547	151	2.3	151	91	1	567	26	18	24	31	1.97
43559198--43559550	50	7.0	50	75	5	316	26	17	24	30	1.97
43569916--43570181	132	2.0	133	81	3	313	33	18	19	29	1.95
43573197--43573628	132	3.3	129	84	3	456	27	23	19	29	1.98
43573305--43573674	132	2.8	132	90	1	555	27	23	20	28	1.99
43584866--43584973	55	2.0	55	81	3	128	23	36	20	20	1.95
43585150--43585222	38	1.9	38	100	0	146	47	19	5	27	1.71
43587266--43587437	93	1.8	93	96	0	317	27	30	22	20	1.98
43587258--43587433	46	3.8	46	81	10	232	28	29	21	20	1.98
43592270--43592294	12	2.1	12	100	0	50	40	24	20	16	1.91
43594403--43594486	42	2.0	42	100	0	168	33	19	21	26	1.97
43596436--43596468	17	1.9	17	100	0	66	24	30	24	21	1.99
43601514--43601643	40	3.3	39	83	4	163	23	25	28	23	1.99
43609555--43609684	40	3.3	39	83	4	163	23	25	28	23	1.99
43611910--43612021	28	4.0	29	79	11	101	27	25	17	28	1.98
43619742--43619814	24	3.0	24	78	8	76	21	15	21	41	1.90
43619769--43619905	23	5.9	23	80	7	145	21	20	20	37	1.95
43619752--43619905	46	3.3	47	85	7	188	22	19	20	38	1.94
43619777--43619925	69	2.1	71	81	6	169	23	19	20	36	1.95
43624479--43624527	17	2.8	18	74	22	50	24	18	22	34	1.96
43625350--43625516	40	4.2	40	79	6	169	25	21	27	25	1.99
43632492--43632540	17	2.8	18	74	22	50	24	18	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43633362--43633528	40	4.2	40	79	6	169	25	21	27	25	1.99
43651946--43652066	29	4.2	29	87	4	156	31	15	28	23	1.96
43651947--43652066	56	2.1	58	85	3	163	31	15	29	23	1.95
43659776--43659906	29	4.6	29	87	1	165	29	15	31	24	1.95
43659777--43659897	57	2.1	58	87	1	172	31	15	28	23	1.96
43664636--43664667	14	2.4	13	90	10	55	62	12	6	18	1.50
43668461--43668595	29	4.7	29	86	3	155	23	31	15	29	1.95
43668407--43668596	58	3.3	58	77	4	179	24	33	16	26	1.96
43676571--43676705	29	4.7	29	86	3	155	23	31	15	29	1.95
43676517--43676706	58	3.3	58	77	4	179	24	33	16	26	1.96
43685454--43685517	32	2.0	32	93	0	110	25	17	26	31	1.97
43689045--43689097	13	4.2	13	74	13	56	22	39	20	16	1.92
43689052--43689101	25	2.0	25	96	0	91	22	40	22	16	1.91
43689056--43689114	25	2.4	25	82	0	73	30	33	18	16	1.94
43690073--43690176	36	2.9	37	82	4	122	41	29	12	16	1.85
43691029--43691076	17	2.8	17	81	12	55	60	2	4	33	1.27
43699306--43699358	27	2.0	27	92	0	88	30	15	15	39	1.87
43702265--43702311	23	2.0	23	87	0	67	40	19	19	21	1.92
43702280--43702331	24	2.2	23	86	3	68	38	17	23	21	1.93
43707000--43707041	20	2.2	20	86	4	59	30	11	4	52	1.59
43710320--43710444	43	2.9	43	86	0	187	15	21	32	30	1.94
43712009--43712112	48	2.2	48	81	6	113	30	22	29	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43714283--43714404	37	3.3	37	97	0	226	21	33	19	25	1.97
43714506--43714867	49	7.4	49	94	0	607	29	32	9	28	1.88
43714713--43714797	27	3.3	27	63	15	72	30	34	4	30	1.78
43719189--43719356	43	3.9	43	92	3	284	13	23	33	29	1.93
43721550--43721700	40	3.8	40	77	13	134	27	23	26	22	2.00
43721587--43721716	40	3.2	40	77	4	138	24	23	27	23	2.00
43729514--43729664	40	3.8	40	77	13	134	27	23	26	22	2.00
43729551--43729680	40	3.2	40	77	4	138	24	23	27	23	2.00
43731733--43731795	30	2.1	31	90	3	101	23	23	15	36	1.94
43732055--43732136	24	3.5	24	94	3	148	25	21	21	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318