Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  309  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96309154--96309227
20
3.9
19
76
16
82
16
4
0
79
0.87
96309154--96309235
36
2.2
36
83
14
98
17
3
0
79
0.88
96310152--96310382
118
2.0
118
92
0
390
22
17
31
28
1.97
96312384--96312433
10
5.0
10
83
9
66
22
10
2
66
1.32
96313157--96313214
29
2.0
29
89
0
89
29
10
1
58
1.41
96315351--96315400
10
4.8
10
75
24
50
58
12
0
30
1.34
96315351--96315438
20
4.3
20
78
11
65
54
11
1
32
1.43
96315370--96315438
19
3.5
19
86
4
84
53
10
1
34
1.44
96315387--96315444
19
3.0
19
75
14
57
51
8
1
37
1.43
96315448--96315509
28
2.3
26
81
10
70
67
1
3
27
1.15
96318579--96318615
20
1.9
18
89
10
56
35
21
0
43
1.53
96322765--96322833
28
2.5
28
85
4
86
31
11
28
27
1.92
96328604--96328645
21
2.0
21
100
0
84
28
9
9
52
1.65
96333896--96334038
60
2.3
62
80
10
161
27
27
18
25
1.98
96334060--96334115
19
2.8
20
79
12
62
33
25
16
25
1.95
96334472--96334520
18
2.6
18
83
6
53
38
20
16
24
1.92
96334609--96334652
18
2.4
18
100
0
88
22
13
18
45
1.84
96336584--96336628
18
2.3
20
85
14
60
37
2
2
57
1.23
96339054--96339156
37
2.8
37
92
0
152
36
4
12
45
1.64
96339096--96339156
17
3.4
17
68
12
50
34
3
11
50
1.55
96339169--96339253
9
9.4
9
86
0
98
24
12
22
40
1.89
96345894--96346157
94
2.7
94
93
4
429
31
15
22
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96345995--96346151
51
3.1
50
90
1
242
31
15
23
29
1.95
96349742--96349810
33
2.1
34
97
2
131
30
11
33
24
1.91
96353802--96354065
101
2.6
101
96
0
483
32
15
23
29
1.95
96353802--96354059
51
5.1
51
89
1
403
31
15
23
29
1.95
96358160--96358201
21
2.0
21
100
0
84
28
9
9
52
1.65
96376028--96376058
10
3.0
10
95
4
53
0
12
0
87
0.55
96379406--96379618
46
4.9
40
80
17
223
38
15
23
22
1.93
96379447--96379662
46
4.7
46
90
0
306
39
14
23
21
1.91
96379397--96379662
138
2.0
130
86
5
370
39
15
23
22
1.91
96385750--96385787
19
2.0
19
100
0
76
15
15
21
47
1.82
96387152--96387193
17
2.4
17
88
4
66
11
9
2
76
1.12
96387153--96387192
9
4.8
8
88
11
62
12
10
2
75
1.15
96387207--96387278
36
2.0
36
84
13
94
23
6
2
66
1.29
96387232--96387279
18
2.7
17
81
9
60
29
4
0
66
1.10
96387295--96387348
22
2.5
21
82
8
65
38
0
1
59
1.08
96387295--96387361
23
2.9
23
82
10
66
40
0
1
58
1.07
96387483--96387533
18
2.9
17
78
18
59
17
3
1
76
1.03
96387611--96387648
13
2.9
13
88
7
51
21
2
5
71
1.19
96387869--96387920
22
2.3
23
77
16
54
44
3
1
50
1.31
96388116--96388204
10
9.4
9
72
11
63
52
2
1
43
1.20
96388116--96388204
19
4.7
18
73
12
63
52
2
1
43
1.20
96388106--96388218
29
3.9
28
76
5
109
53
1
1
42
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96388174--96388263
33
2.7
34
78
14
98
53
2
1
43
1.20
96391701--96391823
30
4.1
30
84
0
156
30
27
19
22
1.98
96394730--96394783
20
2.7
21
77
5
58
59
0
3
37
1.15
96394744--96394783
21
1.9
21
90
10
64
60
0
2
37
1.11
96394768--96394827
23
2.8
22
76
14
63
58
3
0
38
1.15
96394910--96394970
25
2.4
25
83
5
68
45
0
3
50
1.17
96394955--96394980
12
2.2
12
100
0
52
53
0
7
38
1.30
96395022--96395060
2
21.0
2
85
15
57
48
0
0
51
1.00
96395460--96395535
23
3.6
23
74
13
65
57
2
1
38
1.21
96395531--96395583
18
3.0
17
76
13
54
64
1
1
32
1.15
96396414--96396884
228
2.0
235
95
3
848
31
15
10
42
1.81
96398976--96399024
19
2.6
18
83
9
53
51
0
2
46
1.12
96398976--96399024
20
2.5
20
81
15
57
51
0
2
46
1.12
96401864--96401914
4
12.5
4
83
4
57
21
0
25
52
1.47
96402037--96402083
4
11.8
4
81
0
58
23
4
21
51
1.65
96402139--96402238
50
2.0
50
100
0
200
22
10
24
44
1.83
96407954--96408028
39
1.9
39
97
0
141
33
17
10
38
1.84
96408822--96408876
29
1.9
28
85
3
74
27
5
7
60
1.46
96409261--96409504
42
5.8
42
70
11
133
39
18
18
23
1.92
96409341--96409487
43
3.4
43
72
10
122
40
17
20
21
1.91
96409290--96409504
85
2.5
84
82
2
277
40
17
18
24
1.91
96409603--96409639
7
5.4
7
96
3
67
32
27
10
29
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96417463--96417514
15
3.5
15
78
0
59
42
0
46
11
1.40
96417454--96417500
24
2.0
24
87
8
69
40
0
48
10
1.38
96417453--96417515
30
2.1
30
87
0
90
44
0
46
9
1.36
96426589--96427087
166
3.0
166
97
0
944
40
15
13
30
1.85
96429378--96429431
27
2.0
27
100
0
108
29
11
22
37
1.89
96431770--96431838
30
2.3
30
94
2
120
33
14
11
40
1.82
96433521--96433736
107
2.0
108
96
0
398
44
5
8
41
1.59
96434378--96434421
14
3.4
14
81
15
58
68
0
0
31
0.90
96435383--96435434
20
2.5
20
84
3
59
55
1
36
5
1.35
96435814--96435841
2
14.0
2
100
0
56
50
0
0
50
1.00
96436107--96436312
80
2.7
78
90
6
314
50
4
11
33
1.59
96436872--96436896
2
12.5
2
100
0
50
52
0
0
48
1.00
96438153--96438200
22
2.2
22
88
0
69
25
0
0
75
0.81
96442447--96442474
2
14.0
2
100
0
56
50
0
0
50
1.00
96444442--96444510
36
1.9
35
82
8
86
56
10
7
26
1.58
96445647--96445742
31
3.1
31
73
5
95
39
6
4
50
1.47
96449340--96449383
9
4.7
9
86
10
61
63
0
0
36
0.95
96449349--96449382
11
3.3
11
92
8
54
64
0
0
35
0.94
96449349--96449406
20
2.8
20
82
5
71
62
0
3
34
1.12
96455177--96455201
3
8.3
3
100
0
50
68
0
32
0
0.90
96455574--96455617
23
1.9
23
86
9
63
45
6
9
38
1.63
96455728--96455767
20
1.9
22
85
10
57
40
5
5
50
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96456779--96456808
15
2.0
15
93
0
51
63
0
6
30
1.20
96456888--96457163
3
92.7
3
65
18
78
62
1
7
28
1.30
96456889--96456991
35
3.0
36
80
8
99
64
0
6
28
1.25
96456901--96456978
34
2.3
33
78
8
86
64
1
6
28
1.26
96456998--96457052
27
2.0
29
92
7
96
70
1
5
21
1.16
96457209--96457243
18
1.9
18
88
0
52
60
0
14
25
1.35
96460922--96460970
20
2.7
18
84
12
64
32
2
2
63
1.17
96461757--96461892
69
2.0
69
86
0
191
37
11
10
41
1.75
96469303--96469327
7
3.6
7
100
0
50
40
0
16
44
1.47
96470175--96470208
3
11.3
3
87
0
50
29
2
35
32
1.73
96470710--96470763
27
2.0
27
85
7
74
50
3
0
46
1.19
96470761--96470790
12
2.6
12
94
5
53
76
3
0
20
0.92
96470759--96470790
11
2.6
13
85
14
50
75
3
0
21
0.95
96471221--96471254
3
11.3
3
100
0
68
35
0
0
64
0.94
96486026--96486059
16
2.1
16
100
0
68
35
0
11
52
1.38
96486031--96486066
16
2.2
16
90
0
54
41
2
5
50
1.40
96489545--96489574
10
3.0
10
90
0
51
26
0
3
70
1.03
96489776--96489809
16
2.1
16
88
5
50
61
0
0
38
0.96
96492402--96492441
17
2.3
18
86
4
55
65
0
0
35
0.93
96492574--96492605
2
16.0
2
100
0
64
50
0
0
50
1.00
96495280--96495337
31
1.9
30
89
6
91
29
3
17
50
1.62
96495282--96495358
31
2.5
30
83
10
86
29
7
16
45
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96495347--96495406
31
1.9
32
82
3
77
36
15
6
41
1.73
96495852--96495890
19
2.0
20
85
9
55
53
2
5
38
1.37
96496205--96496233
15
1.9
15
100
0
58
65
0
0
34
0.93
96506562--96506641
32
2.5
32
97
2
151
66
3
0
30
1.09
96506655--96506703
24
2.0
24
100
0
98
24
20
4
51
1.65
96507316--96507388
31
2.4
31
83
4
85
41
19
13
26
1.88
96507334--96507394
31
1.9
32
90
3
97
39
19
16
24
1.92
96510219--96510286
32
2.2
31
83
2
82
26
7
7
58
1.51
96512705--96512739
14
2.4
14
95
4
61
31
0
14
54
1.40
96513026--96513088
24
2.6
23
75
9
63
49
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318