genome.fa.s2.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  153  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47041538--47041666	50	2.5	51	90	5	199	25	22	16	35	1.94
47043681--47043868	48	3.9	48	79	2	207	29	18	28	24	1.98
47046334--47046553	40	5.6	40	82	4	250	25	26	23	25	2.00
47054385--47054602	40	5.5	40	78	5	212	25	25	22	26	2.00
47054393--47054603	80	2.7	80	83	3	241	25	26	22	25	2.00
47056299--47056348	21	2.4	21	83	3	66	10	36	30	24	1.88
47056674--47056710	16	2.3	16	95	0	65	56	5	16	21	1.59
47057537--47057583	16	3.0	16	78	9	53	31	0	14	53	1.42
47059813--47059848	15	2.5	14	86	8	54	66	0	11	22	1.22
47061074--47061208	24	5.6	24	82	3	148	23	12	28	34	1.92
47061074--47061208	72	1.9	72	85	0	189	23	12	28	34	1.92
47061074--47061224	72	2.1	72	81	2	169	25	13	28	33	1.93
47068994--47069049	11	5.5	11	71	16	57	35	14	19	30	1.91
47068983--47069049	20	3.3	20	93	0	116	35	13	19	31	1.90
47069368--47069457	38	2.7	31	71	22	92	36	15	22	25	1.93
47073846--47074016	40	4.3	39	77	10	159	28	21	26	23	1.99
47081859--47082029	40	4.3	39	77	10	159	28	21	26	23	1.99
47088384--47088450	20	3.3	20	93	0	116	35	13	19	31	1.90
47088395--47088450	11	5.5	11	71	16	57	35	14	19	30	1.91
47088384--47088464	40	2.0	40	85	0	108	35	13	18	32	1.90
47088498--47088564	25	2.7	24	84	8	89	26	28	22	22	1.99
47088499--47088581	24	3.4	24	80	8	69	30	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47088791--47088880	38	2.7	31	76	22	101	33	16	24	25	1.96
47097408--47097510	29	3.6	29	92	2	154	26	15	32	26	1.96
47099806--47099842	15	2.6	14	83	8	56	70	0	8	21	1.13
47101796--47101904	37	2.9	37	93	0	182	27	30	19	22	1.98
47102050--47102235	100	1.9	96	85	6	257	31	25	5	37	1.80
47102050--47102237	48	3.8	48	85	5	243	31	25	5	37	1.79
47102206--47102399	47	4.1	47	90	0	289	26	29	10	32	1.90
47102299--47102370	22	3.1	22	64	24	58	23	29	13	33	1.93
47106540--47106928	40	9.7	40	93	0	598	25	27	21	25	1.99
47108198--47108343	37	3.9	37	96	0	256	26	32	18	22	1.97
47108489--47108677	48	3.8	48	85	6	245	31	25	6	36	1.81
47108647--47108840	47	4.1	47	89	0	271	26	28	10	34	1.90
47111685--47111782	24	4.1	24	93	0	151	20	13	31	34	1.91
47111685--47111819	72	1.9	72	85	0	189	23	13	28	34	1.92
47111685--47111846	72	2.2	72	80	2	173	24	13	29	32	1.93
47122377--47122481	29	3.6	29	80	2	95	25	32	17	24	1.97
47122436--47122508	29	2.5	29	97	0	137	26	28	15	30	1.96
47128133--47128234	29	3.5	29	91	0	150	26	30	15	27	1.96
47134433--47134562	40	3.3	39	83	4	163	23	28	25	23	1.99
47142453--47142582	40	3.3	39	83	4	163	23	28	25	23	1.99
47144365--47144583	40	5.5	40	89	4	300	26	20	26	27	1.99
47152539--47152756	79	2.7	79	89	4	314	25	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47152539--47152756	40	5.5	40	89	5	300	25	19	26	27	1.99
47152543--47152789	79	3.1	79	84	7	245	26	20	26	27	1.99
47155580--47155697	43	2.8	42	75	12	114	22	17	26	33	1.96
47158184--47158229	23	2.0	23	95	4	85	32	13	15	39	1.85
47158759--47158806	20	2.4	20	92	0	78	18	39	29	12	1.88
47159880--47159934	28	1.9	28	92	3	92	43	25	0	30	1.55
47160152--47160233	29	2.9	28	82	10	105	35	24	19	20	1.96
47160702--47160744	22	2.1	19	87	12	59	34	27	0	37	1.57
47167907--47168001	38	2.4	40	84	5	131	28	22	27	22	1.99
47167851--47168001	78	1.9	80	83	5	200	25	23	27	23	2.00
47172734--47172855	63	1.9	63	98	0	235	32	18	19	28	1.96
47174183--47174303	47	2.6	46	80	8	129	25	29	16	28	1.97
47183937--47184212	47	5.8	47	71	17	185	24	29	19	26	1.99
47183932--47184253	47	6.9	47	70	18	183	25	28	19	26	1.99
47183939--47184256	94	3.4	94	74	11	283	25	29	19	26	1.99
47186869--47187038	46	3.7	46	78	13	195	28	28	20	22	1.98
47186874--47187044	93	1.8	93	92	0	288	28	28	20	22	1.98
47187464--47187523	30	2.0	30	90	0	93	30	25	8	36	1.85
47190296--47190479	40	4.6	40	81	2	172	28	22	26	22	1.99
47190336--47190524	80	2.4	80	77	5	184	24	22	29	23	1.99
47198435--47198544	40	2.7	39	86	5	139	28	22	27	21	1.99
47198388--47198564	40	4.4	39	74	11	137	30	20	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47201526--47201629	48	2.2	48	82	3	120	23	27	20	28	1.99
47202929--47203104	46	3.8	46	81	10	232	20	21	29	28	1.98
47202925--47203096	93	1.8	93	96	0	317	20	22	30	27	1.98
47204414--47204635	48	4.6	48	77	4	223	24	28	19	27	1.99
47213854--47213881	5	5.6	5	100	0	56	78	0	0	21	0.75
47221046--47221103	21	2.8	21	91	0	98	17	29	32	20	1.95
47221178--47221358	73	2.5	73	83	0	209	24	22	21	31	1.98
47225008--47225049	20	2.1	20	100	0	84	50	26	9	14	1.73
47231548--47231598	25	2.0	25	100	0	102	27	7	23	41	1.82
47233676--47233866	47	4.1	47	90	2	289	32	12	29	26	1.92
47233701--47233776	22	3.3	22	67	22	66	31	13	30	25	1.93
47233825--47233971	50	3.0	50	93	3	244	37	8	24	29	1.84
47234121--47234229	37	2.9	37	94	0	182	22	19	30	27	1.98
47237504--47237624	45	2.7	46	83	10	160	35	28	12	23	1.91
47242433--47242640	79	2.6	80	78	6	190	24	30	23	22	1.99
47242533--47242640	40	2.7	40	86	0	135	21	30	25	23	1.99
47248555--47248656	29	3.5	29	90	0	150	23	33	15	27	1.95
47254931--47255081	40	3.8	40	79	6	155	26	23	27	22	2.00
47254968--47255097	40	3.2	40	81	2	163	23	23	28	24	2.00
47262936--47263086	40	3.8	40	77	13	141	25	24	27	22	2.00
47262973--47263102	40	3.2	40	80	2	154	23	23	27	24	2.00
47264737--47264788	17	3.0	17	94	2	86	9	34	38	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47266426--47266475	23	2.1	24	92	3	84	20	16	16	48	1.82
47267931--47267987	2	29.0	2	96	3	107	49	0	50	0	1.00
47273171--47273239	36	1.9	36	96	0	129	28	15	17	37	1.91
47276319--47276389	35	2.0	35	97	0	133	42	25	16	15	1.88
47276701--47276748	19	2.5	19	96	0	87	33	2	43	20	1.64
47278611--47278780	40	4.2	40	80	6	184	25	25	21	26	2.00
47278638--47278780	39	3.6	39	82	5	162	25	26	22	25	2.00
47278605--47278778	79	2.2	80	83	6	219	25	25	22	25	2.00
47286659--47286836	40	4.5	39	80	8	182	24	25	23	25	2.00
47286659--47286836	80	2.2	81	86	4	245	24	25	23	25	2.00
47292807--47293077	40	6.8	40	93	0	427	26	21	27	25	1.99
47296917--47297109	96	2.0	97	94	2	343	32	8	28	30	1.86
47296915--47297111	49	4.1	49	94	2	344	32	8	27	30	1.86
47298501--47298567	27	2.4	28	85	2	91	34	23	13	28	1.93
47298575--47298681	42	2.5	42	96	0	196	22	33	14	28	1.94
47303146--47303215	27	2.5	28	86	2	97	32	25	14	27	1.94
47303230--47303326	42	2.3	42	98	0	185	21	34	15	28	1.94
47307665--47307713	21	2.4	21	82	3	64	51	32	4	12	1.58
47309370--47309413	21	2.1	21	91	0	70	38	15	27	18	1.91
47309391--47309487	42	2.3	42	80	0	113	45	15	22	16	1.85
47311689--47311771	31	2.7	30	92	7	141	28	26	15	28	1.96
47311977--47312112	26	5.3	26	88	3	190	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47311977--47312112	52	2.7	51	93	5	224	26	22	22	28	1.99
47312162--47312232	20	3.5	20	94	0	124	29	16	11	42	1.83
47312955--47313018	27	2.4	27	81	5	76	21	25	17	35	1.95
47313051--47313312	27	9.7	27	77	6	165	30	9	20	38	1.85
47313052--47313308	54	4.7	55	74	7	202	31	10	20	38	1.86
47313272--47313355	27	3.1	27	84	3	107	30	10	19	39	1.85
47313136--47313337	108	1.9	107	84	3	271	31	9	20	38	1.85
47314854--47314893	2	21.0	2	90	10	66	47	0	0	52	1.00
47314880--47314921	20	2.2	19	87	12	59	38	0	4	57	1.20
47316125--47316150	13	2.0	13	100	0	52	38	0	23	38	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318