genome.fa.s2.2.7.7.80.10.50.1000.293.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  293  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92206098--92206128	16	1.9	16	93	0	53	0	58	0	41	0.98
92207219--92207255	20	1.9	18	89	10	56	29	0	5	64	1.15
92207624--92207653	16	1.9	15	93	6	51	46	0	6	46	1.29
92209245--92209337	42	2.2	42	98	0	177	19	32	29	19	1.96
92211605--92211659	28	2.0	28	85	0	74	36	21	10	30	1.88
92213569--92213627	31	1.9	31	82	0	73	27	8	8	55	1.58
92216855--92216892	6	6.3	6	100	0	76	0	65	0	34	0.93
92225280--92225519	126	1.9	126	95	0	435	37	16	17	28	1.91
92225618--92225687	10	6.7	10	70	20	54	62	1	5	30	1.27
92225621--92225687	16	3.9	16	71	17	53	62	1	5	29	1.28
92225618--92225701	21	4.1	20	71	19	57	61	2	5	29	1.32
92226349--92226384	18	2.0	18	88	0	54	19	0	55	25	1.43
92226666--92227053	85	4.6	86	91	1	590	20	26	24	28	1.99
92226779--92226910	41	3.1	41	63	21	101	18	28	25	28	1.98
92227074--92227215	44	3.2	44	72	13	157	24	17	19	38	1.93
92227039--92227175	43	3.2	43	68	14	120	22	16	23	37	1.93
92226662--92227304	85	7.5	86	83	6	397	21	23	22	32	1.98
92227506--92227792	89	3.2	88	67	14	235	24	22	21	32	1.98
92227350--92227804	179	2.6	178	88	3	682	25	20	21	32	1.97
92229048--92229102	24	2.4	24	75	6	60	0	25	3	70	1.03
92229083--92229132	14	3.3	15	78	21	59	0	26	0	74	0.83
92229058--92229139	15	5.9	14	73	20	66	0	21	1	76	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92232555--92232711	65	2.4	65	97	0	296	30	25	28	15	1.96
92233396--92233636	126	1.9	126	95	0	437	37	14	17	30	1.90
92234548--92234610	29	2.2	29	88	5	92	15	1	50	31	1.54
92245590--92245646	26	2.1	27	90	3	89	47	8	19	24	1.77
92247551--92247606	29	1.9	29	92	0	94	48	10	16	25	1.78
92250563--92250588	8	3.2	8	100	0	52	76	0	0	23	0.78
92253467--92253658	98	2.0	98	95	0	348	45	6	21	26	1.75
92270291--92270327	2	18.5	2	94	0	65	51	0	0	48	1.00
92271235--92271555	46	7.0	46	83	3	358	21	23	14	41	1.89
92273388--92273446	11	5.2	11	84	8	73	64	1	0	33	1.04
92273847--92273884	19	2.1	19	85	14	53	13	18	2	65	1.37
92275785--92275809	12	2.1	12	100	0	50	52	0	16	32	1.44
92276239--92276281	21	2.0	21	100	0	86	44	0	18	37	1.50
92276243--92276288	21	2.2	21	92	0	74	43	2	19	34	1.63
92282348--92282388	21	2.0	21	85	9	57	41	2	2	53	1.27
92283172--92283366	94	2.1	94	83	1	239	44	3	7	44	1.48
92283495--92283562	33	2.0	34	82	2	84	45	0	1	52	1.09
92283911--92283940	2	15.0	2	92	0	51	50	3	46	0	1.18
92300348--92300581	127	1.8	128	88	1	364	35	16	17	31	1.92
92300861--92300902	17	2.7	15	80	20	50	69	4	2	23	1.20
92301059--92301093	6	5.8	6	93	0	61	71	0	11	17	1.14
92301058--92301096	12	3.2	12	92	0	69	74	0	10	15	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92301049--92301108	24	2.5	23	76	10	66	71	0	6	21	1.08
92301204--92301242	20	2.0	20	85	10	53	64	2	2	30	1.21
92302036--92302095	27	2.2	27	100	0	120	13	3	30	53	1.56
92314847--92314908	24	2.6	25	80	14	78	54	1	1	41	1.19
92321570--92321624	28	2.0	28	96	0	101	14	20	18	47	1.83
92321709--92321762	27	2.0	27	96	0	99	22	9	24	44	1.81
92321712--92321769	27	2.1	27	90	0	89	27	8	24	39	1.84
92322900--92323035	26	5.2	26	95	1	229	34	5	23	36	1.77
92324648--92324760	27	4.2	27	82	3	120	17	23	23	36	1.95
92324646--92324760	54	2.1	54	87	3	160	17	22	23	36	1.95
92327000--92327058	26	2.3	26	87	0	82	20	5	18	55	1.61
92326995--92327058	13	5.0	13	84	1	67	18	6	18	56	1.62
92327041--92327176	9	14.7	9	72	17	91	29	2	11	56	1.47
92327041--92327176	37	3.7	36	80	10	132	29	2	11	56	1.47
92327298--92327347	13	3.9	13	89	2	66	20	4	20	56	1.58
92327312--92327385	13	5.8	13	72	20	57	24	4	17	54	1.60
92327317--92327389	22	3.6	21	71	21	66	24	4	17	53	1.61
92327385--92327447	19	3.4	19	74	12	67	26	4	14	53	1.60
92327330--92327465	37	3.7	36	82	12	168	26	3	15	54	1.58
92327310--92327477	9	19.1	9	67	22	83	24	4	17	54	1.60
92327586--92327638	13	4.2	13	87	2	72	18	5	20	54	1.64
92327621--92327717	37	2.6	37	88	0	149	26	2	14	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92327704--92327818	25	4.6	25	74	18	107	21	3	19	55	1.57
92327601--92327816	9	23.9	9	68	20	89	23	3	17	56	1.56
92327683--92327768	30	2.9	31	86	6	115	20	4	16	58	1.56
92327685--92327795	25	4.0	28	80	11	120	20	4	17	57	1.57
92327781--92327816	4	8.8	4	87	6	54	25	0	25	50	1.50
92327848--92327892	21	2.1	20	84	12	54	24	6	20	48	1.73
92335029--92335062	16	2.1	16	88	0	50	14	5	14	64	1.46
92341329--92341438	26	4.2	26	95	2	177	34	5	23	36	1.78
92343058--92343197	27	5.2	27	88	2	183	17	24	22	35	1.96
92343058--92343197	54	2.6	55	89	2	203	17	24	22	35	1.96
92346959--92346988	2	15.0	2	100	0	60	50	0	0	50	1.00
92350022--92350082	23	2.6	24	78	2	70	16	21	19	42	1.89
92350319--92350546	46	5.0	46	86	1	269	39	14	24	22	1.91
92356568--92356599	8	4.1	8	96	4	57	75	0	0	25	0.81
92357126--92357165	21	1.9	21	85	10	55	62	0	12	25	1.30
92358557--92358609	15	3.3	16	76	7	54	33	0	0	66	0.92
92359112--92359139	2	14.0	2	100	0	56	50	0	0	50	1.00
92360701--92360733	12	2.5	13	90	9	50	45	0	0	54	0.99
92363041--92363078	13	2.9	13	77	14	51	34	2	0	63	1.09
92363311--92363367	30	1.9	30	85	7	80	29	3	12	54	1.54
92363922--92364002	22	3.6	22	74	9	83	44	13	14	27	1.83
92363924--92364046	45	2.7	46	88	6	180	43	12	15	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92363932--92364034	24	4.5	23	69	10	77	44	13	14	27	1.83
92368295--92368321	2	13.5	2	100	0	54	51	0	0	48	1.00
92376096--92376131	17	2.1	17	90	10	56	38	11	0	50	1.38
92376611--92376652	21	2.0	21	95	0	75	28	7	19	45	1.76
92380894--92380922	13	2.2	13	100	0	58	51	10	20	17	1.74
92395516--92395543	2	14.0	2	100	0	56	50	0	0	50	1.00
92397751--92397776	5	5.2	5	100	0	52	19	0	0	80	0.71
92401265--92401353	27	3.3	27	73	3	97	53	7	8	29	1.60
92401282--92401368	28	3.1	28	73	3	104	58	4	5	31	1.42
92401263--92401373	55	2.0	55	98	0	213	54	8	7	29	1.56
92405276--92405321	22	2.0	23	87	4	67	41	4	2	52	1.33
92407595--92407690	48	2.0	49	90	10	153	42	1	4	52	1.27
92407734--92407767	5	7.2	5	87	12	54	82	0	17	0	0.67
92407734--92407771	18	2.1	18	95	0	67	81	0	18	0	0.69
92407734--92407759	13	2.0	13	100	0	52	84	0	15	0	0.62
92408525--92408596	37	1.9	37	81	10	85	38	2	18	40	1.65
92415043--92415178	29	4.7	29	86	3	157	24	30	15	29	1.95
92415018--92415177	58	2.8	58	81	0	176	23	33	15	27	1.95
92417764--92417929	35	4.6	35	82	8	172	31	10	24	33	1.90
92417764--92417934	75	2.4	75	85	7	221	31	11	23	33	1.90
92421545--92421598	26	2.0	27	86	10	76	50	7	1	40	1.41
92422233--92422338	30	3.5	31	80	8	110	47	2	0	49	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92422258--92422398	30	4.6	30	80	12	121	44	2	1	51	1.25
92422229--92422400	63	2.8	59	79	15	163	45	2	1	50	1.21
92422364--92422417	26	2.1	25	82	6	63	44	3	1	50	1.30
92428516--92428567	27	1.9	27	100	0	104	26	23	26	23	2.00
92430542--92430658	10	12.8	9	66	16	53	64	2	5	28	1.28
92430684--92430723	19	2.2	19	90	4	64	65	7	5	22	1.38
92431002--92431059	18	3.3	17	79	11	55	32	1	3	62	1.22
92431035--92431074	19	2.1	19	85	4	53	30	0	2	67	1.04
92436615--92436688	36	2.0	36	85	12	98	21	5	4	68	1.26
92436642--92436689	18	2.7	17	75	9	51	27	4	2	66	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318