Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  197  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61798772--61798879
40
2.7
38
85
8
128
21
29
25
23
1.99
61806848--61806996
80
1.9
80
81
2
183
22
30
24
22
1.99
61806889--61806996
40
2.7
38
85
8
128
21
29
25
23
1.99
61810895--61811056
41
3.9
40
74
15
150
22
22
27
27
1.99
61816761--61816803
18
2.3
19
84
4
61
25
23
0
51
1.49
61816958--61817043
21
4.0
22
82
10
106
37
25
22
15
1.93
61816958--61817044
44
2.0
41
84
6
111
36
25
21
16
1.94
61823015--61823190
46
3.8
46
79
12
216
20
21
29
28
1.98
61823012--61823183
93
1.8
93
96
0
317
20
21
29
27
1.98
61830108--61830282
46
3.8
46
79
8
212
21
20
28
29
1.98
61830105--61830274
92
1.8
92
93
0
295
21
21
28
28
1.98
61835121--61835148
2
14.0
2
100
0
56
50
0
0
50
1.00
61835627--61835667
2
20.0
2
95
5
73
48
0
2
48
1.14
61835694--61835855
41
3.9
40
73
15
150
22
22
27
27
1.99
61840845--61842078
44
26.8
44
71
11
490
30
19
16
33
1.94
61840896--61841226
89
3.7
89
80
3
315
29
20
17
32
1.96
61840845--61841189
133
2.6
134
79
5
353
28
20
17
32
1.96
61841439--61841694
141
1.8
141
83
3
345
31
22
14
31
1.94
61841671--61841870
89
2.3
88
80
4
215
32
20
16
31
1.94
61841631--61841932
133
2.2
135
79
6
317
32
20
16
30
1.95
61841912--61842026
51
2.2
51
85
1
158
31
14
20
33
1.93
61841915--61842264
145
2.4
144
77
8
363
30
16
17
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61845871--61846022
40
3.8
40
86
1
198
21
27
23
27
1.99
61845871--61846064
40
4.8
39
81
6
185
22
26
22
28
1.99
61848507--61848531
2
12.5
2
100
0
50
52
0
0
48
1.00
61849314--61849355
2
21.0
2
100
0
84
0
0
50
50
1.00
61849511--61849567
15
3.9
15
88
2
89
35
0
12
52
1.39
61849507--61849565
30
2.0
28
93
6
100
32
0
11
55
1.36
61849940--61850025
21
3.9
23
79
10
90
15
22
25
37
1.93
61850188--61850228
19
2.2
19
87
12
59
46
0
24
29
1.53
61854019--61854093
36
2.1
36
100
0
150
48
5
18
28
1.70
61855180--61855224
11
3.9
11
80
11
54
35
0
0
64
0.94
61855175--61855230
24
2.3
24
87
3
76
37
0
1
60
1.07
61857355--61857582
46
5.0
46
91
1
314
40
14
24
21
1.89
61860905--61861062
48
3.3
48
85
7
205
30
8
10
50
1.68
61862203--61862238
14
2.6
14
86
0
54
50
2
13
33
1.57
61865104--61865159
2
28.0
2
100
0
112
50
0
0
50
1.00
61868806--61868988
96
1.9
96
85
2
251
11
30
16
41
1.84
61870294--61870401
26
4.2
26
86
0
153
31
6
25
37
1.81
61872001--61872140
27
5.2
27
81
11
162
18
22
22
35
1.95
61872001--61872140
54
2.6
54
91
2
219
18
22
22
35
1.95
61872001--61872159
81
2.0
80
81
8
189
20
23
21
35
1.96
61876187--61876354
86
2.0
86
80
7
189
32
10
10
45
1.73
61880894--61881023
10
13.1
10
68
19
58
37
1
3
57
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61880942--61880983
22
1.9
22
95
0
75
35
0
4
59
1.19
61880961--61881003
9
4.9
8
83
13
50
37
0
2
60
1.10
61881267--61881302
16
2.2
16
90
5
54
75
5
0
19
1.00
61886838--61886888
26
2.0
26
100
0
102
29
11
11
47
1.76
61888350--61888429
25
3.2
25
85
0
97
38
7
12
41
1.71
61893499--61893531
16
2.0
17
94
5
59
39
6
24
30
1.79
61894834--61894871
2
19.0
2
100
0
76
0
0
50
50
1.00
61895554--61895593
4
9.5
4
84
10
53
77
0
22
0
0.77
61895551--61895594
22
2.0
22
95
0
79
75
0
25
0
0.81
61899326--61899465
49
2.9
49
93
0
235
35
12
10
42
1.76
61901714--61901855
40
3.5
40
83
1
124
27
23
26
22
1.99
61901753--61901881
40
3.2
39
84
6
152
24
22
27
25
2.00
61909724--61909865
40
3.5
40
83
1
124
27
23
26
22
1.99
61909763--61909891
40
3.2
39
84
6
152
24
22
27
25
2.00
61912188--61912371
40
4.6
40
85
2
253
25
26
23
25
2.00
61914582--61914638
18
3.2
18
82
0
78
3
26
33
36
1.74
61914587--61914650
6
10.7
6
79
0
65
3
28
34
34
1.73
61914582--61914646
18
3.6
18
80
0
76
3
27
33
35
1.73
61915261--61915288
14
2.0
14
100
0
56
35
0
21
42
1.53
61915263--61915296
14
2.4
14
90
0
50
41
2
17
38
1.65
61917965--61918058
43
2.2
43
88
0
134
26
14
25
32
1.95
61918020--61918249
55
4.1
56
85
1
311
26
13
26
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61918004--61918249
111
2.2
111
85
2
334
26
13
26
33
1.94
61919638--61919680
2
21.5
2
95
0
77
46
0
2
51
1.13
61922067--61922132
15
4.2
15
67
17
53
65
13
0
21
1.27
61922881--61922909
2
14.5
2
100
0
58
48
0
0
51
1.00
61923143--61923175
17
2.1
16
88
11
50
30
0
0
69
0.88
61923222--61923280
21
2.8
22
85
7
70
23
0
6
69
1.12
61923251--61923310
26
2.4
24
83
8
75
28
0
3
68
1.05
61923825--61923868
20
2.3
19
92
4
70
43
0
9
47
1.35
61930818--61930850
11
2.9
12
86
13
52
33
0
0
66
0.92
61931063--61931105
22
2.0
22
81
9
52
60
6
11
20
1.54
61944765--61944882
47
2.5
48
81
9
136
25
32
17
24
1.97
61947772--61947936
43
3.9
42
76
12
140
23
15
26
34
1.94
61947779--61947936
42
3.7
41
76
10
99
24
15
27
33
1.95
61964130--61964353
93
2.4
96
81
11
273
21
25
22
29
1.99
61964180--61964344
47
3.5
45
75
12
145
22
26
21
29
1.99
61964461--61964492
17
2.0
17
88
11
50
40
12
9
37
1.75
61972074--61972202
52
2.5
51
82
2
152
25
16
27
31
1.96
61975731--61975788
15
3.9
15
78
13
57
17
10
15
56
1.66
61975864--61975891
2
14.0
2
100
0
56
50
0
0
50
1.00
61978492--61978677
51
3.7
51
80
0
185
26
18
25
29
1.98
61978492--61978624
50
2.6
50
84
1
149
26
21
24
27
2.00
61980243--61980383
40
3.5
40
83
6
160
28
26
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61980233--61980399
40
4.2
40
85
1
140
28
24
20
26
1.99
61985737--61986102
80
4.6
80
82
2
387
14
18
26
40
1.89
61985766--61986115
40
8.8
40
82
2
346
14
18
26
40
1.89
61985766--61986115
120
2.9
119
81
3
409
14
18
26
40
1.89
62005230--62005271
14
3.1
14
74
19
52
45
4
0
50
1.23
62005229--62005277
13
3.8
13
77
17
57
38
4
0
57
1.18
62009961--62009995
17
2.0
18
94
5
63
25
5
11
57
1.56
62011788--62011836
17
2.8
18
74
22
50
24
18
22
34
1.96
62012696--62012823
40
3.2
40
80
5
143
25
22
28
24
2.00
62015885--62016198
46
6.7
48
77
12
246
22
30
19
27
1.98
62015885--62016201
94
3.4
94
78
13
293
22
30
19
27
1.98
62023241--62023339
49
2.0
49
98
0
189
45
13
22
19
1.84
62023253--62023335
27
3.3
27
69
22
88
45
13
21
19
1.84
62025128--62025159
16
2.0
16
93
0
55
25
6
21
46
1.74
62026080--62026105
13
2.0
13
100
0
52
53
15
0
30
1.42
62026911--62026938
13
2.2
13
100
0
56
17
28
32
21
1.96
62029028--62029067
20
2.0
20
90
0
62
75
5
5
15
1.15
62035033--62035062
14
2.1
14
93
0
51
63
10
6
20
1.47
62037194--62037418
40
5.7
40
96
1
400
27
26
23
23
2.00
62045344--62045556
40
5.3
40
92
1
340
27
25
22
24
2.00
62051658--62051690
9
3.7
9
95
0
57
39
12
18
30
1.87
62051658--62051703
9
5.0
9
89
2
56
39
15
15
30
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62052065--62052112
24
2.0
24
95
0
87
27
45
4
22
1.70
62056769--62056802
2
17.0
2
100
0
68
50
0
0
50
1.00
62057644--62057668
6
4.2
6
100
0
50
0
64
0
36
0.94
62059229--62059276
23
2.1
23
100
0
96
35
20
8
35
1.83
62062175--62062248
29
2.5
28
84
4
85
31
33
14
20
1.93
62065472--62065644
27
6.4
27
73
6
109
25
28
12
33
1.92
62067813--62067879
19
3.6
19
80
11
77
56
5
0
37
1.24
62076784--62076837
28
1.9
28
88
7
83
57
0
0
42
0.98
62076785--62076837
9
5.8
9
77
18
56
58
0
0
41
0.98
62076785--62076852
19
3.5
21
73
15
58
57
1
1
39
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318