genome.fa.s2.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  156  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48027013--48027166	27	5.7	27	87	1	193	37	7	23	31	1.83
48030740--48030871	40	3.3	40	74	5	124	27	27	20	25	1.99
48033830--48033907	27	2.9	27	79	11	88	20	20	21	37	1.95
48033952--48034202	27	9.3	27	76	12	133	30	7	20	41	1.79
48034010--48034161	27	5.7	26	81	9	148	28	6	20	44	1.76
48034040--48034175	53	2.6	53	80	6	150	29	6	21	42	1.78
48034154--48034334	81	2.2	81	87	0	254	36	7	23	32	1.84
48034154--48034310	27	5.8	27	90	0	233	37	7	24	30	1.83
48037226--48037259	13	2.6	13	100	0	68	0	29	38	32	1.58
48038745--48038920	46	3.8	46	78	12	198	22	19	28	29	1.98
48038741--48038912	93	1.8	93	92	0	290	22	20	29	28	1.98
48043557--48043666	46	2.4	46	89	0	157	21	20	26	30	1.98
48047417--48047552	43	3.2	42	75	10	143	31	24	15	28	1.95
48048671--48048699	14	2.0	15	93	6	51	48	20	0	31	1.50
48049217--48049255	20	1.9	20	84	5	51	51	15	2	30	1.57
48049482--48049531	18	2.8	18	80	14	59	34	0	0	66	0.92
48055900--48055977	30	2.6	30	93	0	129	43	11	26	17	1.84
48056599--48056662	34	1.9	33	87	3	92	20	25	25	29	1.99
48058215--48058400	40	4.7	40	85	5	207	27	26	20	25	1.99
48066354--48066536	39	4.7	40	84	9	225	25	27	21	25	1.99
48074943--48075124	39	4.6	39	90	0	265	23	31	21	23	1.98
48079213--48079431	40	5.6	39	89	7	281	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48087274--48087456	40	4.7	40	87	8	243	26	27	21	24	1.99
48087274--48087455	77	2.3	80	83	11	232	26	27	21	24	1.99
48095230--48095416	80	2.3	80	83	1	232	24	26	23	25	2.00
48095198--48095415	40	5.4	40	83	2	206	22	26	24	27	2.00
48096464--48096506	21	2.0	21	100	0	86	44	23	13	18	1.86
48097879--48098045	40	4.2	40	79	2	158	23	26	23	26	2.00
48097895--48098043	80	1.9	79	83	6	194	22	26	24	26	2.00
48105869--48106036	40	4.2	40	79	3	160	23	26	23	27	2.00
48105885--48106034	80	1.9	80	83	8	198	22	26	24	27	1.99
48113490--48113673	49	3.7	50	79	2	199	26	18	25	29	1.98
48113497--48113686	101	1.9	100	85	1	263	27	18	24	29	1.98
48125036--48125111	30	2.6	29	81	6	89	39	11	23	25	1.89
48135521--48135698	48	3.7	48	84	3	223	26	17	24	32	1.97
48139393--48139550	40	4.0	40	79	4	151	26	24	26	22	2.00
48139393--48139580	80	2.3	80	79	12	206	26	23	27	22	2.00
48143312--48143462	40	3.8	40	78	6	155	27	23	27	21	1.99
48143314--48143462	80	1.9	79	84	6	203	26	24	27	21	1.99
48143312--48143478	80	2.1	79	81	7	196	26	23	26	22	2.00
48147551--48147579	2	14.5	2	100	0	58	51	0	0	48	1.00
48147594--48147725	65	2.0	65	100	0	264	24	31	10	34	1.89
48147605--48147706	32	3.2	32	66	18	93	25	29	8	36	1.86
48147709--48147924	47	4.6	47	95	0	369	26	31	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48147709--48147950	94	2.5	94	89	2	376	27	30	11	30	1.92
48151395--48151877	40	12.1	40	94	0	813	25	25	21	27	2.00
48154138--48154166	2	14.5	2	100	0	58	51	0	0	48	1.00
48154181--48154312	65	2.0	65	100	0	264	24	31	10	34	1.89
48154192--48154293	32	3.2	32	66	18	93	25	29	8	36	1.86
48154296--48154511	47	4.6	47	95	0	369	26	31	12	30	1.92
48154296--48154537	94	2.5	94	89	2	376	27	30	11	30	1.92
48157584--48157767	40	4.6	39	75	6	138	26	23	27	22	2.00
48157624--48157812	80	2.4	81	77	4	186	23	24	29	22	1.99
48160585--48160623	15	2.5	15	87	4	51	15	12	17	53	1.72
48163222--48163464	49	4.9	49	82	2	270	24	19	27	28	1.98
48163326--48163409	28	3.2	28	65	25	83	23	16	29	29	1.96
48163224--48163453	100	2.3	98	87	2	316	24	19	26	29	1.98
48166162--48166200	15	2.5	15	87	4	51	15	12	17	53	1.72
48172415--48172461	22	2.0	22	84	8	58	23	17	10	48	1.77
48173342--48173529	38	4.9	38	95	2	313	21	31	22	24	1.98
48181341--48181531	39	4.9	39	94	0	310	21	30	23	24	1.99
48184748--48184785	16	2.4	16	86	8	51	44	23	23	7	1.79
48185006--48185128	28	4.4	28	93	0	183	24	17	34	22	1.96
48187088--48187152	29	2.2	29	80	0	85	32	18	27	21	1.97
48187091--48187165	29	2.6	29	82	0	78	29	17	30	22	1.97
48188606--48188754	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48188647--48188754	40	2.7	38	85	8	128	21	29	25	23	1.99
48198445--48198575	29	4.5	29	88	0	163	29	15	31	23	1.95
48204397--48204442	18	2.5	20	75	13	53	34	4	21	39	1.73
48208828--48208897	28	2.5	28	88	9	99	27	14	27	31	1.95
48216569--48216638	28	2.5	28	88	9	99	27	14	27	31	1.95
48224360--48224429	28	2.5	28	86	9	90	28	14	25	31	1.95
48227806--48227869	32	2.0	32	100	0	128	37	9	34	18	1.83
48227806--48227859	17	3.3	17	65	19	51	37	7	40	14	1.74
48228288--48228329	16	2.7	15	79	20	50	47	2	0	50	1.14
48241548--48241601	27	2.0	27	89	10	85	31	14	25	27	1.95
48241743--48241843	27	3.8	27	84	1	123	21	21	19	36	1.95
48241985--48242039	28	2.0	28	85	0	74	27	25	21	25	2.00
48245577--48245681	27	3.9	27	79	0	120	38	18	18	25	1.93
48245567--48245684	54	2.2	54	86	6	175	39	18	16	25	1.91
48246197--48246260	22	2.9	22	81	9	85	20	25	21	32	1.97
48246262--48246302	20	2.0	20	85	0	55	14	17	31	36	1.90
48246528--48246576	25	2.0	25	87	0	71	20	20	14	44	1.86
48251278--48251334	28	2.0	29	82	3	71	45	21	3	29	1.68
48255537--48255639	44	2.4	43	80	4	118	36	25	15	22	1.93
48265327--48265497	93	1.8	93	96	0	315	28	28	21	21	1.99
48265322--48265494	46	3.7	46	78	13	210	28	27	21	21	1.99
48265917--48265976	30	2.0	30	83	0	75	33	25	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48275025--48275207	39	4.6	39	87	0	240	22	30	22	24	1.99
48280105--48280140	13	2.8	14	84	16	51	27	25	0	47	1.52
48280092--48280132	18	2.2	19	87	12	59	29	24	0	46	1.53
48280255--48280390	39	3.5	40	71	8	100	29	27	19	24	1.98
48280628--48280666	18	2.1	19	90	4	62	48	10	0	41	1.37
48285609--48285700	29	3.2	28	89	7	141	28	14	28	29	1.95
48289596--48289764	27	6.3	27	92	0	266	40	20	7	31	1.80
48289596--48289790	54	3.6	54	86	4	171	40	21	8	30	1.82
48289596--48289828	81	2.9	81	83	5	240	39	21	8	30	1.83
48289758--48289832	27	2.8	27	85	4	98	37	25	10	26	1.89
48289784--48289961	81	2.2	81	76	4	198	34	20	8	35	1.84
48289824--48289955	27	4.9	27	85	3	176	29	21	9	39	1.84
48289955--48290192	27	8.9	27	80	1	237	36	18	20	24	1.94
48289967--48290192	80	2.8	79	81	6	249	37	18	20	23	1.94
48290410--48290574	73	2.4	69	86	6	217	18	29	22	30	1.97
48292174--48292310	6	22.3	6	77	15	129	17	17	16	48	1.81
48292177--48292301	19	6.8	17	77	12	81	16	18	16	48	1.81
48292189--48292250	25	2.5	25	94	0	106	19	19	14	46	1.83
48292177--48292296	31	3.9	31	76	12	138	16	18	16	48	1.82
48292208--48292301	37	2.5	37	87	0	143	18	18	14	48	1.81
48292170--48292290	62	2.0	62	91	0	197	17	19	15	47	1.82
48294465--48294538	27	2.7	27	85	0	103	40	18	9	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48294523--48294799	27	10.0	27	80	8	272	35	17	21	25	1.95
48294573--48294650	35	2.2	35	90	0	120	39	20	17	21	1.92
48295103--48295166	33	2.0	32	84	3	83	20	23	20	35	1.96
48295128--48295187	27	2.3	26	85	2	75	21	23	20	35	1.96
48295311--48295373	25	2.5	25	89	0	90	17	17	17	47	1.83
48295306--48295498	6	31.3	6	71	16	119	18	18	15	48	1.82
48295328--48295410	37	2.2	37	86	0	121	18	19	18	44	1.87
48295371--48295432	25	2.5	25	89	0	88	17	19	17	45	1.86
48295306--48295471	62	2.7	62	89	0	251	17	18	16	47	1.83
48295390--48295477	37	2.4	37	82	0	113	18	18	14	48	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318