genome.fa.s2.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  169  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52505617--52505664	19	2.6	19	78	18	57	39	2	0	58	1.10
52508344--52508368	13	1.9	13	100	0	50	40	48	0	12	1.40
52508396--52508434	20	2.0	20	84	0	51	74	5	2	17	1.12
52508455--52508522	9	7.6	9	78	6	75	29	8	20	41	1.82
52508455--52508522	27	2.5	27	81	13	95	29	8	20	41	1.82
52519518--52519783	30	9.0	30	72	11	140	42	13	23	21	1.88
52519550--52519738	87	2.1	87	84	7	240	42	12	24	20	1.86
52519698--52519768	29	2.4	30	90	2	108	46	12	26	14	1.80
52519518--52519783	119	2.2	118	84	4	347	42	13	23	21	1.88
52519550--52519780	89	2.6	90	81	6	242	41	12	24	20	1.88
52519519--52519823	119	2.6	119	81	3	294	41	13	23	21	1.89
52521621--52521668	25	1.9	25	83	8	62	29	27	16	27	1.97
52521827--52521863	15	2.4	15	90	4	56	32	5	16	45	1.70
52527400--52527425	13	2.0	13	100	0	52	30	38	0	30	1.58
52553221--52553301	37	2.2	37	90	0	126	24	33	20	20	1.97
52553460--52553585	48	2.6	48	89	0	180	30	25	7	36	1.84
52559137--52559266	40	3.2	40	82	4	165	23	24	28	23	2.00
52567182--52567311	40	3.2	40	82	4	165	23	24	28	23	2.00
52568935--52569145	40	5.3	40	85	4	257	25	21	27	26	1.99
52577052--52577263	40	5.3	40	81	2	230	25	20	26	27	1.99
52580001--52580294	98	3.0	97	92	3	475	37	6	25	31	1.80
52580001--52580294	48	6.0	48	90	2	462	37	6	25	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52580704--52581096	48	8.1	48	91	2	633	35	5	26	32	1.79
52579610--52581008	703	2.0	704	95	1	2508	36	8	22	33	1.84
52580707--52581096	146	2.7	144	91	1	636	35	5	26	32	1.79
52580707--52581093	98	4.0	98	93	1	652	35	5	26	32	1.79
52581242--52581386	37	3.9	37	95	0	254	24	19	31	25	1.98
52586253--52586285	15	2.1	17	88	11	52	54	12	6	27	1.60
52589212--52589273	31	2.0	31	90	6	99	19	19	14	46	1.83
52594220--52594363	40	3.6	41	79	6	152	27	28	22	22	1.99
52600703--52600747	15	2.8	16	80	6	56	26	0	26	46	1.53
52608600--52608672	35	2.1	35	100	0	146	36	21	21	19	1.95
52610021--52610218	71	2.8	70	92	3	294	33	17	28	20	1.95
52610087--52610204	41	3.1	41	60	28	98	32	17	28	21	1.96
52610055--52610218	71	2.3	71	100	0	328	35	17	28	18	1.94
52614556--52614664	37	2.9	37	95	0	191	26	31	19	22	1.98
52614810--52615202	48	8.1	48	91	2	633	32	26	5	36	1.78
52614813--52615199	98	4.0	98	92	1	652	32	26	5	36	1.79
52614810--52615199	146	2.7	147	91	3	644	32	26	5	36	1.78
52614810--52615202	194	2.0	194	94	0	687	32	26	5	36	1.78
52623525--52623705	46	3.9	46	81	12	228	20	20	29	28	1.98
52623527--52623697	93	1.8	93	93	2	299	20	21	29	28	1.98
52626655--52626723	15	4.6	15	83	0	84	11	17	13	57	1.64
52626646--52626733	30	3.0	30	81	8	99	10	17	15	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52626761--52627177	208	2.0	208	99	0	816	28	10	20	39	1.86
52628855--52629035	46	3.9	46	81	11	226	20	20	29	28	1.98
52628857--52629027	93	1.8	93	94	2	308	20	21	29	28	1.98
52635529--52635598	27	2.6	27	95	2	122	30	27	14	28	1.95
52650002--52650051	26	1.9	26	100	0	100	36	12	14	38	1.83
52652186--52652234	25	1.9	26	83	4	64	14	12	6	67	1.40
52654236--52654386	40	3.8	40	77	13	134	27	23	26	22	2.00
52654273--52654402	40	3.2	40	77	4	138	24	23	27	23	2.00
52674628--52674667	20	2.0	20	90	0	62	20	25	15	40	1.90
52678950--52678988	16	2.4	16	91	4	60	17	20	2	58	1.50
52683586--52683625	20	2.0	20	85	0	53	10	25	22	42	1.84
52684473--52684532	30	2.0	30	83	0	75	41	8	23	26	1.82
52685348--52685532	50	3.7	49	83	1	208	26	18	25	29	1.98
52686622--52686648	2	13.5	2	100	0	54	48	0	0	51	1.00
52688171--52688295	27	4.7	27	89	3	173	41	20	7	30	1.79
52688279--52688353	27	2.8	27	81	4	89	36	25	12	26	1.91
52688194--52688311	54	2.2	54	81	6	132	39	20	8	31	1.82
52688171--52688349	81	2.2	81	81	4	193	39	22	8	29	1.84
52688314--52688582	54	5.0	54	84	5	159	28	23	10	37	1.88
52688345--52688636	108	2.7	108	92	3	480	27	22	9	40	1.85
52688345--52688636	27	10.8	27	88	1	397	27	22	9	40	1.85
52689964--52690006	20	2.2	20	100	0	86	37	11	18	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52689971--52690014	20	2.2	20	91	0	70	34	11	22	31	1.90
52690061--52690227	24	7.0	24	89	3	239	29	22	21	26	1.99
52690421--52690484	31	2.1	31	90	0	101	35	15	23	25	1.94
52697446--52697506	30	2.1	29	96	3	113	36	22	16	24	1.94
52701210--52701337	64	2.0	64	100	0	256	32	18	14	34	1.91
52703295--52703477	39	4.6	39	87	0	240	22	30	22	24	1.99
52708125--52708186	30	2.1	29	96	3	115	37	22	16	24	1.94
52712805--52712890	43	2.0	43	90	4	138	48	4	24	22	1.69
52716604--52716751	79	1.9	80	83	7	194	25	22	28	23	1.99
52716600--52716784	40	4.7	40	76	6	171	24	23	27	24	2.00
52724666--52724777	38	2.8	39	81	5	120	26	22	28	22	1.99
52724680--52724818	40	3.5	40	83	5	142	25	24	28	22	2.00
52724628--52724810	78	2.3	80	82	8	214	24	23	27	24	2.00
52726493--52726594	34	2.9	35	91	2	170	16	50	12	20	1.78
52732866--52732935	27	2.5	28	88	2	106	28	14	25	31	1.95
52732866--52732947	27	3.0	27	80	8	103	29	13	23	34	1.93
52734725--52734794	27	2.6	27	95	2	122	28	28	14	28	1.95
52740935--52741160	40	5.7	40	91	4	368	26	26	21	25	2.00
52740902--52741156	78	3.2	80	87	5	360	25	27	21	25	2.00
52748660--52748710	27	2.0	26	88	7	77	19	21	19	39	1.93
52753515--52753682	40	4.2	40	80	3	196	25	22	27	25	2.00
52761791--52761958	40	4.2	40	80	3	196	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52767341--52767375	17	1.9	17	88	11	52	60	0	5	34	1.21
52768352--52768411	26	2.3	25	78	13	59	16	26	25	31	1.96
52769216--52769273	30	1.9	30	96	0	107	32	8	13	44	1.75
52778381--52778593	84	2.5	84	89	0	320	27	26	16	29	1.97
52778566--52778620	29	1.9	28	88	3	83	27	23	16	32	1.96
52778488--52778706	112	1.9	113	92	0	368	26	26	17	29	1.97
52780907--52781074	40	4.2	40	80	1	167	23	27	23	25	2.00
52780923--52781072	80	1.9	80	83	5	196	22	27	24	26	2.00
52786135--52786235	28	3.5	28	86	6	114	29	26	13	29	1.94
52788198--52788277	29	2.7	29	86	5	108	27	32	15	25	1.95
52797613--52797698	43	2.0	44	83	2	111	44	18	25	11	1.84
52802922--52802966	4	10.8	4	90	9	72	22	0	0	77	0.76
52802922--52802966	13	3.6	12	91	8	72	22	0	0	77	0.76
52802918--52802966	17	2.9	17	100	0	98	22	0	0	77	0.77
52808794--52808846	5	10.8	5	82	11	65	3	13	0	83	0.79
52813799--52813868	27	2.5	28	95	2	124	28	14	27	30	1.95
52813799--52813880	27	3.0	27	85	8	78	29	15	24	30	1.96
52820214--52820273	30	2.0	30	90	0	93	30	25	8	36	1.85
52827194--52827363	93	1.8	92	93	1	295	27	29	22	21	1.99
52827783--52827842	30	2.0	30	86	0	84	30	25	6	38	1.81
52829459--52829507	23	2.1	23	85	7	64	48	28	10	12	1.73
52835429--52835462	18	1.9	18	88	5	52	29	17	11	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52837856--52838038	40	4.6	40	83	3	181	23	26	22	27	1.99
52845950--52846118	40	4.2	40	80	4	173	23	26	21	28	1.99
52860968--52861079	27	4.2	28	80	5	108	36	20	21	21	1.95
52862272--52862305	16	2.1	17	94	5	61	70	0	29	0	0.87
52863981--52864050	25	2.8	25	93	0	113	24	24	25	25	2.00
52864097--52864135	10	3.8	10	90	6	60	33	17	17	30	1.94
52864097--52864136	21	1.9	21	94	0	71	32	17	17	32	1.93
52871818--52871880	25	2.5	25	97	0	117	22	22	31	23	1.98
52871931--52871990	10	5.8	10	84	7	84	33	18	15	33	1.92
52871931--52871989	21	2.8	21	100	0	118	33	18	13	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318