Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  16  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4186647--4186694
2
24.0
2
95
0
87
52
0
0
47
1.00
4187539--4187580
14
3.1
14
80
16
52
57
0
0
42
0.99
4195613--4195651
13
2.9
13
96
3
69
30
0
0
69
0.89
4198490--4198527
20
1.9
20
94
0
67
10
28
0
60
1.30
4198859--4198899
3
13.7
3
100
0
82
0
34
0
65
0.93
4203896--4203938
20
2.2
20
100
0
86
27
13
25
32
1.94
4204320--4205399
361
3.0
361
96
0
1989
28
18
25
27
1.98
4209134--4209186
2
26.5
2
100
0
106
49
0
0
50
1.00
4216007--4216032
2
13.0
2
100
0
52
50
0
0
50
1.00
4219080--4219117
2
19.5
2
94
5
69
50
0
0
50
1.00
4224864--4224893
15
2.0
15
93
0
51
63
0
6
30
1.20
4224972--4225078
3
35.7
3
69
17
62
62
0
9
27
1.32
4224972--4225068
17
5.8
17
65
20
51
60
1
10
27
1.36
4226392--4226432
18
2.4
17
84
8
55
4
29
7
58
1.46
4227725--4227787
28
2.2
28
97
2
117
34
15
11
38
1.83
4233746--4233883
43
3.2
43
94
0
231
27
15
23
32
1.96
4240784--4240879
43
2.2
43
88
3
140
29
16
26
28
1.97
4243587--4243669
22
3.7
23
85
12
91
18
0
34
46
1.49
4243593--4243669
7
10.2
8
86
8
92
16
0
35
48
1.47
4243593--4243674
30
2.7
30
85
7
121
18
1
35
45
1.57
4248421--4248451
15
2.1
15
100
0
62
38
29
0
32
1.57
4252558--4252591
18
1.9
17
88
5
50
41
0
14
44
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4254879--4255054
87
2.0
87
96
0
325
40
20
3
35
1.71
4256883--4256968
22
3.9
23
80
8
99
37
23
20
18
1.94
4256883--4256969
23
4.0
23
80
8
101
36
22
20
19
1.95
4259093--4259283
95
2.0
97
85
4
262
32
21
7
38
1.82
4262119--4262348
102
2.3
102
86
1
327
43
12
23
21
1.86
4262980--4263004
4
6.2
4
100
0
50
24
0
0
76
0.80
4270906--4270976
22
3.5
21
69
21
62
38
35
18
8
1.81
4270816--4271036
38
5.8
38
83
2
264
36
31
19
13
1.90
4276102--4276137
3
12.0
3
100
0
72
66
0
0
33
0.92
4287059--4287103
21
2.1
21
88
8
65
20
4
4
71
1.21
4287847--4287900
27
2.0
27
92
7
92
33
9
20
37
1.84
4289935--4289991
27
2.1
27
90
0
87
50
1
8
38
1.44
4290517--4290550
18
1.9
17
94
5
59
64
5
0
29
1.17
4292559--4292731
60
3.0
59
87
6
248
35
16
14
33
1.89
4292784--4292894
54
2.1
54
96
0
204
41
18
12
27
1.86
4292637--4292965
144
2.3
142
85
7
414
36
18
15
29
1.92
4292992--4293310
79
4.0
78
77
15
324
33
19
17
28
1.95
4292976--4293304
165
2.0
165
84
7
434
34
19
17
28
1.95
4305895--4305946
27
1.9
27
88
0
77
50
1
11
36
1.50
4306414--4306453
8
4.9
8
90
3
53
52
7
0
40
1.30
4306418--4306448
2
15.5
2
93
0
53
51
3
0
45
1.17
4306486--4306519
18
1.9
17
94
5
59
64
5
0
29
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4310232--4310311
31
2.5
31
81
2
88
57
11
2
28
1.46
4310547--4310598
27
2.0
27
92
3
88
17
15
15
51
1.76
4310696--4310748
25
2.1
25
85
0
70
58
11
13
16
1.63
4311474--4311522
17
2.9
17
96
0
89
63
0
0
36
0.95
4318878--4318929
25
2.1
25
100
0
104
57
19
7
15
1.62
4320053--4320112
24
2.5
24
73
10
59
55
6
0
38
1.27
4321167--4321204
14
2.7
14
95
0
67
36
5
18
39
1.73
4321188--4321233
19
2.3
20
92
3
76
23
8
17
50
1.74
4321314--4321356
18
2.5
18
85
7
54
51
0
0
48
1.00
4321309--4321351
18
2.4
18
92
0
68
48
2
0
48
1.14
4327472--4327557
43
2.0
43
88
0
127
52
3
20
23
1.62
4327532--4327572
19
2.2
19
91
4
66
53
0
21
24
1.46
4333200--4333285
43
2.0
43
88
0
127
52
3
20
23
1.62
4333260--4333300
19
2.2
19
91
4
66
53
0
21
24
1.46
4344348--4344381
2
17.0
2
88
11
52
50
2
0
47
1.16
4349422--4349596
46
3.8
45
78
7
190
28
30
20
20
1.98
4349429--4349601
93
1.9
93
93
0
301
27
30
20
20
1.98
4351504--4351580
15
5.2
15
78
7
77
57
14
18
10
1.65
4351498--4351592
30
3.2
30
77
15
83
57
14
16
10
1.64
4354415--4354589
46
3.8
45
78
7
190
29
29
20
21
1.98
4354423--4354594
93
1.8
93
92
0
290
28
30
20
20
1.98
4357316--4357357
5
8.2
5
89
5
66
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4359703--4359765
30
2.1
30
96
0
117
57
12
3
26
1.51
4361038--4361078
18
2.2
19
86
8
57
60
2
4
31
1.30
4362608--4362667
27
2.1
30
84
9
81
58
8
0
33
1.28
4369232--4369273
21
2.0
22
95
4
77
59
4
0
35
1.19
4370632--4370721
38
2.4
38
77
16
91
46
1
4
47
1.29
4372686--4372725
2
20.0
2
100
0
80
50
0
0
50
1.00
4378344--4378433
38
2.4
38
77
16
91
47
1
4
46
1.29
4381713--4381738
3
8.7
3
100
0
52
30
0
0
69
0.89
4381912--4381980
30
2.3
30
87
0
93
49
0
1
49
1.09
4383219--4383251
15
2.1
16
88
5
50
9
9
0
81
0.87
4383578--4383705
42
3.0
41
88
2
175
42
25
13
19
1.87
4401876--4401927
22
2.3
23
77
6
63
21
13
5
59
1.55
4401967--4402026
30
2.0
30
90
0
93
28
3
13
55
1.54
4402721--4402754
17
1.9
18
88
5
52
55
0
0
44
0.99
4404508--4404550
22
1.9
23
85
4
61
30
0
2
67
1.03
4418753--4418799
12
3.9
12
82
15
53
78
2
2
17
0.94
4419307--4419392
42
2.0
42
88
0
127
17
38
30
13
1.89
4425028--4425069
16
2.6
16
85
14
59
23
7
0
69
1.13
4425313--4425339
2
13.5
2
100
0
54
48
0
0
51
1.00
4425991--4426042
20
2.6
20
96
0
95
28
23
17
30
1.97
4430249--4430288
21
2.0
20
85
5
53
42
2
5
50
1.37
4433586--4433620
8
4.6
8
89
10
56
62
11
0
25
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4434534--4434572
19
2.0
20
85
14
55
25
17
5
51
1.66
4435995--4436033
16
2.6
16
88
8
55
30
0
0
69
0.89
4436007--4436094
22
4.3
19
71
22
63
28
3
3
64
1.25
4436057--4436165
3
35.3
3
73
15
71
31
5
3
59
1.37
4436063--4436139
22
3.5
22
77
11
68
31
6
5
57
1.46
4436817--4436847
11
2.7
11
95
5
53
38
0
6
54
1.26
4437834--4438119
136
2.1
137
94
0
493
32
23
18
25
1.97
4439029--4439203
30
5.8
30
90
1
228
26
48
4
21
1.67
4439749--4439826
25
2.9
27
73
11
79
34
5
1
58
1.28
4439843--4439907
25
2.8
24
86
6
89
35
9
4
50
1.55
4440060--4440107
16
3.1
15
90
6
69
31
2
2
64
1.16
4440060--4440111
8
6.5
8
82
8
61
30
1
1
65
1.14
4441746--4441853
26
4.2
26
93
0
189
36
24
7
32
1.83
4445468--4445502
13
2.7
13
100
0
70
14
51
22
11
1.74
4448922--4448982
19
3.3
19
93
6
108
37
16
8
37
1.78
4449299--4449785
259
1.9
259
87
2
710
27
22
17
33
1.96
4449620--4450371
205
3.7
205
94
1
1287
28
21
18
31
1.96
4449615--4450371
407
1.9
403
93
0
1226
28
21
18
32
1.96
4451314--4451353
1
40.0
1
84
0
53
0
7
0
92
0.38
4451314--4451353
19
2.2
19
95
4
73
0
7
0
92
0.38
4458138--4458171
17
2.0
17
100
0
68
41
11
5
41
1.66
4460375--4460407
16
2.1
16
88
5
50
21
21
0
57
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4469366--4469441
36
2.1
37
82
7
93
52
0
7
39
1.31
4469436--4469462
13
2.1
13
100
0
54
77
0
0
22
0.76
4470241--4470304
31
2.1
31
85
2
85
23
3
14
59
1.49
4470690--4470760
21
3.5
20
79
7
72
33
2
1
61
1.19
4471042--4471079
19
2.0
19
85
10
51
50
7
0
42
1.31
4480215--4480391
39
4.5
39
87
0
255
37
22
25
14
1.92
4480311--4480375
19
3.2
21
73
20
75
40
23
26
10
1.87
4512490--4512577
43
2.0
43
100
0
176
38
2
11
47
1.52
4512552--4512599
19
2.6
19
90
3
80
37
2
12
47
1.53
4516470--4516497
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318