genome.fa.s2.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  149  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45631123--45631174	27	1.9	27	88	0	77	38	11	7	42	1.70
45647045--45647312	50	5.6	50	81	9	249	21	28	20	29	1.98
45648031--45648055	12	2.1	12	100	0	50	60	16	8	16	1.58
45654578--45654798	46	4.7	44	77	13	169	22	28	21	27	1.99
45657016--45657063	15	3.1	17	80	19	52	52	0	0	47	1.00
45657023--45657063	7	5.2	8	83	11	50	53	0	0	46	1.00
45659112--45659308	96	2.1	96	99	0	385	28	23	10	37	1.88
45661370--45661496	66	1.9	64	81	7	148	32	15	29	22	1.95
45669766--45669799	17	1.9	18	88	5	52	38	5	5	50	1.51
45675343--45675443	45	2.2	45	94	0	175	27	25	23	22	2.00
45680206--45680310	35	3.0	35	98	0	201	40	8	21	28	1.83
45682290--45682362	29	2.5	29	93	0	101	26	31	16	26	1.96
45690240--45690312	29	2.5	29	93	0	101	26	31	16	26	1.96
45693177--45693307	29	4.6	29	83	3	140	25	16	32	25	1.96
45701120--45701251	29	4.6	29	83	4	142	25	16	31	25	1.96
45701120--45701252	58	2.3	58	84	2	160	26	16	31	25	1.96
45704194--45704227	17	1.9	18	88	5	52	50	5	5	38	1.51
45707973--45708189	39	5.5	39	91	1	335	20	21	27	30	1.98
45715408--45715441	18	1.9	18	88	5	52	44	14	17	23	1.86
45718608--45718773	40	4.2	40	96	0	296	26	30	22	21	1.99
45726719--45726964	40	6.2	40	93	0	402	26	28	22	21	1.99
45729921--45729990	27	2.5	28	97	2	133	28	12	27	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45737519--45737588	27	2.5	28	97	2	133	28	12	27	31	1.93
45748668--45749116	226	2.0	226	99	0	889	26	20	14	38	1.91
45757326--45757419	42	2.2	42	88	0	134	35	20	14	29	1.93
45757552--45757713	26	6.3	26	84	2	206	29	22	20	27	1.99
45757763--45757829	20	3.3	20	89	4	100	31	17	10	40	1.84
45757865--45757912	25	1.9	25	86	0	69	27	14	22	35	1.93
45758635--45758765	54	2.4	54	84	5	158	31	8	20	39	1.82
45758634--45758785	27	5.7	26	72	9	99	29	7	21	40	1.82
45758817--45758908	27	3.4	27	90	0	139	44	7	19	28	1.78
45758652--45759058	27	15.0	27	72	9	125	32	9	19	38	1.85
45758888--45759126	54	4.4	53	75	4	165	31	9	22	36	1.86
45759013--45759072	27	2.2	27	87	0	84	30	6	25	38	1.81
45759051--45759168	27	4.4	27	92	0	182	37	8	22	31	1.84
45759178--45759328	27	5.6	27	78	7	153	31	7	21	40	1.80
45758699--45759280	244	2.4	244	78	7	619	34	9	20	36	1.85
45760716--45760765	21	2.4	20	80	9	55	38	2	16	44	1.59
45760963--45761015	20	2.7	20	94	2	90	45	7	15	32	1.74
45760958--45761030	20	4.0	18	81	10	69	42	12	16	28	1.84
45761371--45761500	43	3.0	43	85	3	163	30	14	25	29	1.95
45766428--45766600	45	3.9	45	83	6	201	26	29	21	22	1.99
45766593--45766678	38	2.3	38	89	0	127	33	25	20	19	1.97
45768477--45768608	29	4.6	29	88	0	165	29	15	31	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45770761--45770850	28	3.2	27	79	7	92	34	24	22	18	1.96
45770958--45771020	28	2.2	28	91	0	99	30	9	28	31	1.89
45778367--45778556	29	6.6	29	90	1	265	25	15	32	26	1.96
45786372--45786451	28	2.8	29	96	3	153	25	15	32	27	1.95
45786420--45786486	21	3.1	21	72	16	73	29	11	29	28	1.92
45791238--45791336	28	3.5	28	81	9	112	29	25	16	29	1.96
45798630--45798728	28	3.5	28	81	9	112	29	25	16	29	1.96
45799590--45799618	1	29.0	1	100	0	58	0	0	0	100	0.00
45800050--45800116	26	2.4	28	82	9	84	32	11	25	29	1.92
45800057--45800112	27	2.1	27	86	3	78	32	10	26	30	1.90
45801851--45801938	38	2.3	38	86	7	117	34	23	19	22	1.97
45802235--45802352	45	2.7	45	81	6	152	28	25	17	27	1.98
45807596--45807721	45	2.8	45	85	2	182	26	27	23	21	1.99
45807714--45807911	38	5.2	38	86	1	245	30	25	20	23	1.98
45808181--45808296	45	2.7	41	80	7	151	27	29	17	25	1.97
45809667--45809692	2	13.0	2	100	0	52	50	0	0	50	1.00
45815279--45815305	2	13.5	2	100	0	54	51	0	0	48	1.00
45816378--45816559	65	2.9	62	80	10	190	24	29	17	29	1.97
45835061--45835134	15	4.9	15	75	6	69	13	14	14	56	1.67
45847405--45847507	29	3.6	29	81	2	118	21	16	33	29	1.95
45852678--45852884	40	5.2	40	83	1	209	26	22	26	25	2.00
45852679--45852884	79	2.6	80	81	6	229	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45856581--45856606	13	2.0	13	100	0	52	30	7	15	46	1.74
45868229--45868410	39	4.6	40	82	4	181	27	22	26	23	2.00
45876291--45876391	39	2.5	40	85	1	132	30	22	24	21	1.99
45876291--45876473	40	4.6	40	82	3	181	27	22	26	23	1.99
45878699--45879024	48	6.8	48	81	4	329	24	17	28	29	1.98
45887668--45887859	79	2.4	81	83	6	232	23	28	23	24	2.00
45887668--45887859	40	4.8	40	81	7	194	23	28	23	24	2.00
45895172--45895204	12	2.9	12	86	13	52	60	0	0	39	0.97
45896422--45896483	30	2.1	31	87	6	92	41	6	20	30	1.78
45896781--45896834	27	2.0	27	85	0	72	38	7	14	38	1.75
45897061--45897285	101	2.3	99	81	5	258	25	17	26	30	1.97
45897065--45897291	49	4.6	50	78	2	224	25	17	26	30	1.97
45900081--45900131	20	2.5	20	84	9	59	60	0	1	37	1.08
45900338--45900394	31	1.9	30	89	10	91	47	3	0	49	1.18
45900377--45900415	18	2.2	18	90	4	62	74	0	0	25	0.82
45900385--45900417	10	3.4	10	87	4	50	81	0	0	18	0.68
45900513--45900550	20	1.9	20	88	0	58	34	7	13	44	1.72
45909007--45909190	40	4.6	40	80	3	156	21	26	23	28	1.99
45909041--45909194	40	3.8	40	84	1	166	23	25	22	28	1.99
45909044--45909194	80	1.9	80	85	0	212	23	26	21	27	1.99
45921912--45921941	8	3.8	8	90	0	51	50	23	23	3	1.64
45925294--45925369	40	1.9	40	89	5	118	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45925469--45925584	57	2.0	57	98	0	223	26	25	15	32	1.95
45929464--45929675	105	2.0	105	96	1	390	29	25	11	33	1.91
45942032--45942219	29	6.6	29	82	4	168	26	15	32	25	1.96
45949872--45949993	29	4.2	29	89	1	165	31	15	28	24	1.96
45959087--45959237	40	3.8	40	77	11	141	26	24	27	21	2.00
45959124--45959253	40	3.2	40	79	2	154	23	23	28	23	2.00
45959086--45959253	80	2.1	80	82	6	207	26	23	27	22	2.00
45967080--45967230	40	3.8	40	77	11	141	26	24	27	21	2.00
45967117--45967246	40	3.2	40	79	2	154	23	23	28	23	2.00
45967079--45967246	80	2.1	80	82	6	207	26	23	27	22	2.00
45989695--45989734	20	2.0	21	85	14	57	47	15	5	32	1.66
45998885--45999017	48	2.8	48	87	0	185	27	22	23	26	1.99
45998794--45999017	96	2.4	94	80	8	226	27	20	23	28	1.99
46006020--46006129	49	2.2	49	86	0	148	40	19	18	22	1.92
46006841--46006916	37	2.1	37	100	0	152	39	26	7	26	1.83
46023522--46023624	29	3.6	29	81	2	118	21	16	33	29	1.95
46031533--46031635	29	3.6	29	81	2	118	21	16	33	29	1.95
46038613--46038661	17	2.8	18	74	22	50	24	18	22	34	1.96
46039484--46039650	40	4.2	40	79	6	169	25	21	27	25	1.99
46056357--46056450	30	3.1	30	81	7	102	22	25	30	21	1.98
46060696--46060862	40	4.2	40	81	2	176	24	27	22	25	2.00
46060712--46060862	80	1.9	79	83	6	198	23	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46065577--46065726	67	2.2	67	81	8	171	32	17	28	21	1.96
46065601--46065784	67	2.8	64	77	8	194	29	17	29	22	1.97
46065932--46065984	27	2.1	26	89	10	83	32	7	30	30	1.85
46070033--46070182	67	2.2	67	81	8	171	32	17	28	21	1.96
46070057--46070240	67	2.8	64	77	8	194	29	17	29	22	1.97
46070388--46070444	28	2.1	27	96	3	105	29	7	31	31	1.84
46074487--46074636	67	2.2	67	81	8	171	32	17	28	21	1.96
46074511--46074694	67	2.8	64	77	8	194	29	17	29	22	1.97
46078937--46079086	67	2.2	67	81	8	171	32	17	28	21	1.96
46078961--46079144	67	2.8	64	77	8	194	29	17	29	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318