genome.fa.s2.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  38  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10553520--10553611	39	2.4	37	72	13	89	47	1	50	1	1.15
10571918--10571952	2	18.0	2	91	5	54	45	0	0	54	0.99
10575379--10575550	93	1.8	93	96	0	317	27	29	21	20	1.98
10575372--10575547	46	3.8	46	79	12	216	28	29	21	20	1.98
10583145--10583244	27	3.5	28	89	5	130	27	13	28	32	1.93
10583175--10583256	27	3.0	27	87	5	76	28	14	25	31	1.95
10585522--10585669	40	3.8	38	74	8	111	28	22	27	22	1.99
10589220--10589391	93	1.8	93	92	0	290	29	29	20	21	1.98
10589213--10589388	46	3.8	46	77	12	189	30	28	19	21	1.98
10589264--10589407	46	3.1	44	75	15	132	29	28	19	22	1.98
10593931--10594040	40	2.8	40	85	0	148	26	23	26	23	2.00
10593931--10594080	40	3.8	39	80	7	133	26	22	26	24	2.00
10601973--10602080	40	2.7	39	82	2	135	26	22	26	24	2.00
10604999--10605166	40	4.2	40	82	1	185	24	26	22	26	2.00
10613862--10614034	42	4.1	42	76	4	161	30	10	26	32	1.90
10615748--10615798	22	2.3	22	86	6	68	27	19	15	37	1.92
10617145--10617176	15	2.1	15	94	0	55	56	3	9	31	1.47
10618570--10618608	4	9.5	4	84	15	53	76	2	0	20	0.90
10618568--10618601	10	3.3	10	87	4	50	79	2	0	17	0.86
10618569--10618618	21	2.4	21	90	6	75	76	6	0	18	0.99
10620384--10620418	2	17.5	2	100	0	70	48	0	0	51	1.00
10620808--10620837	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10621659--10621711	17	3.1	16	75	20	54	56	1	7	33	1.38
10623727--10624019	78	3.8	78	85	1	399	26	22	18	32	1.97
10627566--10627608	18	2.4	18	84	7	52	51	4	16	27	1.64
10631359--10631411	17	3.1	16	75	20	54	56	1	7	33	1.38
10633067--10633129	29	2.2	29	97	0	117	22	41	12	23	1.88
10633277--10633336	3	20.3	3	75	3	59	30	6	1	61	1.31
10633316--10633465	78	1.9	74	80	9	165	27	6	4	62	1.39
10633811--10633848	17	2.2	18	86	9	53	23	10	7	57	1.58
10640245--10640272	2	14.0	2	100	0	56	50	0	0	50	1.00
10640662--10640698	2	18.5	2	100	0	74	51	0	0	48	1.00
10642475--10642513	4	9.5	4	84	15	53	20	0	2	76	0.90
10642465--10642514	21	2.4	21	90	6	75	18	0	6	76	0.99
10642482--10642515	10	3.3	10	84	8	50	17	0	2	79	0.86
10643659--10643714	17	3.5	15	77	18	51	30	0	3	66	1.09
10643906--10643937	15	2.1	15	94	0	55	31	9	3	56	1.47
10645286--10645336	22	2.3	22	86	6	68	37	15	19	27	1.92
10647050--10647224	42	4.2	41	76	4	145	33	26	10	29	1.90
10655650--10655816	40	4.2	40	79	2	167	23	27	22	25	2.00
10657004--10657123	57	2.1	58	83	7	147	26	15	16	40	1.89
10658852--10658952	28	3.5	30	82	6	118	29	14	26	28	1.95
10658881--10658956	29	2.7	28	76	13	75	30	14	26	28	1.95
10666735--10666835	28	3.5	30	82	6	118	29	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10666764--10666839	29	2.7	28	76	13	75	30	14	26	28	1.95
10668908--10668981	28	2.6	28	91	4	114	28	14	25	31	1.95
10676477--10676524	2	24.0	2	86	0	69	43	6	0	50	1.27
10682123--10682209	21	4.0	23	79	10	83	37	24	21	16	1.93
10683644--10683679	15	2.3	17	81	18	51	0	30	0	69	0.89
10685626--10685736	27	4.1	26	79	10	116	37	21	23	17	1.93
10685626--10685736	54	2.1	54	84	6	145	37	21	23	17	1.93
10690729--10690794	33	2.0	33	100	0	132	30	24	18	27	1.98
10693471--10693565	27	3.5	26	79	13	111	40	21	22	16	1.92
10693495--10693582	27	3.2	26	76	13	88	36	23	22	17	1.94
10697339--10697408	21	3.2	21	66	18	52	20	14	27	38	1.91
10697331--10697418	45	2.0	45	93	0	149	21	13	27	37	1.91
10697776--10697801	2	13.0	2	100	0	52	50	0	0	50	1.00
10700531--10700715	79	2.3	82	83	7	229	24	24	27	23	2.00
10700532--10700723	40	4.8	40	79	7	151	24	24	28	22	2.00
10700531--10700748	79	2.7	79	79	6	183	24	23	27	24	2.00
10708569--10708753	79	2.3	82	83	7	229	24	24	27	23	2.00
10708570--10708761	40	4.8	40	79	7	151	24	24	28	22	2.00
10708569--10708786	79	2.7	79	79	6	183	24	23	27	24	2.00
10716512--10716570	28	2.1	28	90	6	93	38	13	28	18	1.89
10717049--10717109	32	1.9	32	83	6	79	50	6	18	24	1.70
10719212--10719376	86	1.9	86	96	0	303	29	24	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10719970--10720057	45	1.9	46	86	2	124	21	22	15	39	1.91
10722794--10722858	26	2.5	26	94	0	112	24	27	27	20	1.99
10735853--10735999	43	3.4	43	80	10	167	30	17	24	27	1.97
10743903--10744124	44	4.7	46	80	8	182	28	19	28	23	1.98
10743903--10744073	44	3.7	46	84	7	188	26	19	28	24	1.99
10744900--10745023	55	2.3	55	89	0	194	20	20	32	26	1.97
10751290--10751508	47	4.8	45	81	9	246	26	18	29	25	1.98
10751290--10751508	94	2.4	91	86	6	291	26	18	29	25	1.98
10753036--10753103	33	2.1	33	86	5	93	27	25	23	23	2.00
10755269--10755452	40	4.6	40	78	4	147	22	24	29	23	1.99
10763070--10763253	40	4.6	40	78	4	147	22	24	29	23	1.99
10767059--10767635	48	12.0	48	94	0	960	35	6	26	31	1.82
10767776--10767878	37	2.8	37	95	0	179	24	20	31	24	1.98
10769562--10769587	2	13.0	2	100	0	52	50	0	0	50	1.00
10770419--10770490	28	2.6	28	97	0	135	29	18	22	30	1.97
10787407--10787441	17	2.1	17	89	10	54	25	14	0	60	1.35
10787476--10787541	3	22.7	3	84	6	64	34	6	0	59	1.22
10787607--10787637	16	2.0	16	93	6	55	12	3	12	70	1.27
10798241--10798427	71	2.7	68	93	5	281	18	28	18	34	1.95
10798264--10798427	71	2.3	71	100	0	328	18	28	17	35	1.94
10798264--10798461	71	2.8	70	92	3	276	19	28	18	33	1.95
10804159--10804193	17	2.1	17	89	10	54	25	14	0	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10804365--10804394	16	1.9	15	93	6	51	16	3	6	73	1.18
10806029--10806076	15	3.2	15	84	0	60	4	18	16	60	1.51
10807460--10807504	20	2.2	20	88	0	63	48	2	13	35	1.54
10811109--10811172	30	2.1	30	100	0	128	40	3	6	50	1.43
10821925--10821957	17	1.9	17	93	0	57	39	12	12	36	1.80
10830144--10830177	18	1.9	18	88	5	52	38	0	5	55	1.24
10833022--10833100	40	2.0	40	94	0	140	44	13	11	30	1.80
10835695--10835773	32	2.5	32	80	0	95	18	24	39	17	1.92
10840150--10840187	16	2.4	16	86	4	60	55	2	7	34	1.43
10847691--10847724	14	2.4	14	90	0	50	17	0	23	58	1.38
10863478--10863510	13	2.6	13	90	4	50	48	12	0	39	1.40
10866415--10866499	6	17.0	5	78	16	56	74	1	3	21	1.04
10866436--10866500	6	10.5	6	82	12	62	78	0	3	18	0.88
10866416--10866476	11	5.2	11	77	14	68	75	1	3	19	1.03
10868748--10868915	40	4.2	40	82	1	185	24	26	22	26	2.00
10876744--10876910	40	4.2	40	82	2	185	24	26	22	26	2.00
10883042--10883072	16	1.9	16	93	0	53	35	22	0	41	1.54
10883039--10883078	20	2.0	20	85	0	53	37	22	0	40	1.54
10883264--10883515	55	4.8	53	76	11	180	22	23	16	36	1.94
10883311--10883509	108	1.8	109	86	6	287	23	24	16	35	1.95
10894728--10894865	46	2.8	47	80	9	127	31	31	13	23	1.93
10894784--10894938	52	3.0	52	79	8	188	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10895071--10895112	21	1.9	23	85	9	61	52	14	2	30	1.54
10901507--10901690	40	4.6	39	75	6	138	26	23	27	22	2.00
10901547--10901735	80	2.4	81	77	4	186	23	24	29	22	1.99
10909626--10909809	40	4.6	39	75	6	138	26	23	27	22	2.00
10909666--10909854	80	2.4	81	77	4	186	23	24	29	22	1.99
10913857--10913953	46	2.1	46	82	0	113	32	28	14	23	1.94
10913913--10914064	51	3.0	51	75	12	166	29	28	15	25	1.96
10926033--10926160	64	2.0	64	89	0	193	30	15	14	39	1.88
10926494--10926658	89	1.9	89	85	2	233	30	18	17	33	1.94
10926583--10928156	134	11.8	133	81	4	1680	31	18	20	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318