genome.fa.s2.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  161  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49629503--49629695	53	3.6	53	78	3	206	36	18	24	20	1.95
49634229--49634334	40	2.7	39	85	10	135	24	25	28	21	1.99
49640023--49640154	45	3.0	44	84	6	169	27	29	20	22	1.99
49646670--49646800	45	3.0	44	85	4	174	25	28	22	23	1.99
49651790--49651869	28	2.9	28	100	0	160	51	23	0	25	1.49
49653181--49653346	40	4.0	40	71	12	127	29	13	24	32	1.94
49653183--49653376	88	2.2	89	92	1	320	30	12	23	32	1.92
49655883--49656157	50	5.5	50	75	9	242	30	18	26	23	1.98
49655885--49656157	147	1.9	148	91	0	449	30	19	26	23	1.98
49659906--49660006	28	3.5	28	86	6	114	29	26	13	29	1.94
49667860--49667960	28	3.5	28	86	6	114	29	26	13	29	1.94
49671398--49671450	22	2.4	22	84	9	72	73	0	20	5	1.03
49671398--49671449	27	2.0	26	85	11	70	73	0	21	5	1.04
49672537--49672583	21	2.3	20	85	7	67	19	27	19	34	1.96
49680284--49680366	40	2.1	39	90	2	130	22	15	31	30	1.95
49680291--49680469	92	1.9	92	93	0	304	29	13	24	32	1.93
49680386--49680461	40	1.9	40	83	0	98	26	17	26	30	1.97
49680476--49680568	28	3.3	28	78	3	80	32	15	25	26	1.95
49680507--49680580	28	2.6	28	78	0	76	32	16	27	24	1.96
49683588--49683744	39	4.0	39	89	2	183	31	28	21	19	1.97
49686039--49686081	21	2.0	21	90	0	68	9	27	27	34	1.88
49688300--49688338	20	2.0	20	85	10	53	46	2	2	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49694106--49694312	40	5.3	40	91	5	284	25	27	20	27	1.99
49694106--49694312	79	2.6	78	87	7	271	25	27	20	27	1.99
49702265--49702494	40	5.8	40	90	2	313	25	24	22	27	2.00
49702263--49702528	80	3.3	80	84	5	317	25	25	22	25	2.00
49702291--49702528	40	5.9	39	87	3	264	25	25	22	26	2.00
49702263--49702528	120	2.2	120	82	7	342	25	25	22	25	2.00
49706766--49706919	40	3.8	40	81	1	173	25	22	26	25	2.00
49706771--49706943	80	2.1	81	82	3	215	26	23	25	25	2.00
49706771--49706937	40	4.2	39	80	8	165	26	22	25	25	2.00
49706803--49706961	80	2.0	80	80	2	176	29	23	23	23	1.99
49711514--49711575	31	2.0	31	84	9	81	33	19	25	20	1.96
49711521--49711661	67	2.0	67	82	8	167	30	21	29	18	1.97
49719778--49719949	67	2.6	66	81	7	170	31	16	29	22	1.96
49719802--49719985	67	2.8	64	78	8	203	28	16	30	23	1.96
49722165--49722216	27	2.0	26	84	3	68	34	21	26	17	1.95
49724949--49724987	20	2.0	20	84	0	51	46	25	20	7	1.77
49727714--49727753	18	2.2	19	86	13	57	10	30	45	15	1.78
49729617--49729645	14	2.0	15	93	6	51	51	27	0	20	1.47
49732027--49732111	24	3.5	24	90	3	118	32	23	17	25	1.97
49735276--49735358	31	2.7	31	90	3	134	28	27	15	27	1.96
49737221--49737378	40	4.0	40	90	4	205	29	27	20	22	1.98
49737221--49737378	80	2.0	79	88	3	237	29	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49738803--49738992	77	2.5	77	92	3	319	21	32	22	24	1.98
49738803--49738991	38	4.9	39	92	3	310	21	31	22	24	1.98
49742137--49742267	40	3.3	40	83	2	174	25	27	22	24	2.00
49742137--49742303	40	4.2	40	78	6	133	24	25	22	26	2.00
49747906--49748073	40	4.2	40	79	3	160	23	26	23	27	2.00
49747922--49748071	80	1.9	80	83	8	198	22	26	24	27	1.99
49752039--49752196	39	4.1	39	86	0	217	28	20	22	28	1.99
49760451--49760635	39	4.7	39	86	0	244	31	23	20	24	1.98
49764708--49764925	40	5.5	40	87	2	289	25	27	23	23	2.00
49774956--49774988	16	1.9	18	88	11	52	51	18	12	18	1.76
49775478--49775636	45	3.6	45	89	4	218	27	28	21	22	1.99
49778714--49778765	26	2.0	26	92	0	86	34	11	19	34	1.88
49780263--49780302	13	3.1	13	81	0	53	27	7	30	35	1.84
49784672--49784989	72	4.4	72	88	4	455	56	16	5	22	1.59
49789800--49789950	39	3.9	39	94	0	266	26	22	24	26	2.00
49790319--49790344	2	13.0	2	100	0	52	50	0	0	50	1.00
49795582--49795734	43	3.6	43	81	5	148	40	17	18	22	1.91
49797120--49797170	25	2.0	25	96	0	93	45	21	7	25	1.79
49798468--49798522	28	2.0	28	89	3	85	25	12	32	29	1.93
49802857--49802899	22	2.0	22	90	9	70	37	27	13	20	1.91
49811424--49811490	35	1.9	35	82	11	84	44	20	1	32	1.61
49811879--49811939	30	2.0	30	100	0	122	36	22	3	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49814190--49814479	40	7.3	40	86	1	320	27	26	21	24	1.99
49814190--49814479	120	2.4	120	84	4	356	27	26	21	24	1.99
49822466--49822760	40	7.4	40	85	3	312	27	26	22	24	2.00
49822466--49822760	120	2.5	120	83	5	350	27	26	22	24	2.00
49828600--49828803	56	3.6	56	89	2	302	28	14	22	34	1.93
49828601--49828832	112	2.1	112	85	3	306	28	14	23	34	1.94
49837722--49837885	76	2.2	77	82	6	201	24	10	12	52	1.70
49854940--49854997	20	2.9	20	97	0	107	34	12	20	32	1.90
49854944--49854997	11	5.3	11	70	17	53	35	12	20	31	1.90
49855046--49855141	24	4.0	24	89	6	142	28	20	21	29	1.98
49855048--49855120	23	3.1	23	94	3	128	28	20	20	30	1.98
49855335--49855394	31	1.9	31	96	0	111	38	16	20	25	1.93
49858171--49858297	44	2.9	43	79	3	119	19	17	29	33	1.95
49864674--49864837	40	4.1	39	80	10	163	25	27	21	25	2.00
49868835--49868966	29	4.6	29	84	1	149	25	16	32	25	1.96
49876780--49876911	29	4.6	29	84	1	149	25	16	32	25	1.96
49882352--49882516	40	4.1	39	80	7	172	26	26	21	25	2.00
49885873--49885903	13	2.4	13	94	0	53	32	16	0	51	1.44
49888584--49888663	29	2.7	29	75	9	81	35	11	27	26	1.90
49888594--49888812	30	7.4	29	73	9	102	37	12	24	25	1.90
49888651--49888872	30	7.4	30	78	2	151	40	12	23	22	1.88
49888681--49888932	60	4.2	60	75	3	204	40	12	23	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49888853--49888931	30	2.7	30	88	2	124	43	10	18	27	1.83
49889088--49889118	16	1.9	16	100	0	62	25	6	25	41	1.79
49895559--49895584	13	2.0	13	100	0	52	30	23	15	30	1.95
49896048--49896208	43	3.7	43	73	12	134	27	24	20	27	1.99
49903715--49903972	46	5.6	44	75	12	193	24	30	19	25	1.98
49906839--49906979	27	5.2	27	83	10	173	18	24	22	34	1.96
49906836--49906975	54	2.6	54	91	2	219	18	25	21	34	1.96
49913838--49913998	29	5.6	29	81	1	153	24	16	32	25	1.96
49921820--49921980	29	5.6	29	82	1	162	24	16	33	25	1.96
49925420--49925560	27	5.2	27	81	11	173	19	24	21	34	1.97
49925417--49925556	54	2.6	54	93	2	228	19	25	20	34	1.96
49932805--49932974	92	1.8	93	93	1	297	27	28	22	21	1.99
49932797--49932976	46	3.9	46	80	11	233	27	28	21	21	1.99
49936603--49936761	43	3.7	43	80	7	164	28	26	18	26	1.98
49942452--49942650	81	2.5	81	82	7	244	26	27	21	24	1.99
49942453--49942636	41	4.6	41	83	5	216	26	27	21	24	1.99
49942609--49942717	51	2.1	51	96	0	200	30	33	15	21	1.94
49945760--49945800	20	2.0	21	85	4	57	43	0	12	43	1.41
49947550--49947579	11	2.7	11	94	0	51	36	26	10	26	1.88
49951554--49951615	23	2.8	22	75	18	65	43	0	0	56	0.99
49956061--49956101	2	20.5	2	100	0	82	48	0	0	51	1.00
49965945--49966092	73	2.0	73	97	0	278	42	0	11	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49965945--49966054	31	3.2	31	70	28	96	40	0	13	45	1.50
49969965--49970188	53	4.2	54	69	7	132	39	16	22	21	1.92
49970619--49970662	20	2.2	20	95	0	79	13	27	38	20	1.90
49971970--49972033	18	3.6	18	73	0	65	35	17	12	34	1.87
49982346--49982421	22	3.4	21	84	10	64	26	14	7	51	1.69
49982357--49982414	22	2.5	23	91	8	100	24	12	8	55	1.64
49984987--49985477	27	18.2	27	84	4	605	27	21	9	40	1.85
49985482--49985677	27	7.3	27	86	0	257	35	19	19	25	1.96
49985876--49985960	27	3.1	27	81	8	100	21	18	21	38	1.93
49986048--49986106	22	2.7	22	81	0	64	20	25	22	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318