genome.fa.s2.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  146  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44681219--44681428	40	5.2	40	88	2	305	21	28	24	25	1.99
44684521--44684550	15	1.9	16	93	6	53	33	6	33	26	1.83
44686625--44686681	28	2.0	28	96	0	105	49	8	14	28	1.72
44687388--44687424	16	2.3	16	95	0	65	27	8	13	51	1.69
44695394--44695444	20	2.5	20	87	6	68	23	37	27	11	1.90
44698526--44698586	32	1.9	32	93	3	106	36	14	14	34	1.87
44698564--44698668	27	3.9	25	81	9	93	37	20	17	25	1.94
44704205--44704305	46	2.2	45	76	8	114	39	19	21	18	1.92
44704475--44704535	31	2.0	31	86	0	86	31	24	22	21	1.98
44705011--44705329	53	5.9	54	77	10	176	31	10	19	39	1.85
44705011--44705329	80	4.0	79	79	9	317	31	10	19	39	1.85
44705065--44705335	53	5.1	52	82	6	276	30	10	20	38	1.87
44705009--44705335	27	12.2	27	78	6	265	30	10	20	38	1.86
44709592--44709635	6	7.2	6	80	14	54	47	15	20	15	1.82
44709592--44709670	31	2.5	31	85	0	104	50	12	17	18	1.77
44709887--44709938	27	2.0	26	84	3	68	34	21	26	17	1.95
44710176--44710516	27	12.6	27	87	1	416	42	6	19	31	1.78
44710482--44710682	54	3.8	52	75	8	181	30	9	21	37	1.87
44710551--44710675	27	4.7	27	79	10	132	28	9	24	38	1.86
44710537--44710675	27	5.2	26	76	10	120	28	10	22	39	1.86
44712473--44712517	13	3.3	14	77	22	51	60	0	4	35	1.17
44712852--44712934	41	2.0	41	97	0	157	32	2	21	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44714333--44714383	20	2.5	20	96	0	93	21	37	29	11	1.89
44722327--44722470	24	6.0	24	96	0	243	36	25	18	20	1.95
44724077--44724313	24	9.9	24	96	0	411	21	18	24	35	1.95
44725669--44725821	24	6.4	24	99	0	288	34	24	19	20	1.96
44728043--44728083	20	2.0	20	90	0	64	21	39	26	12	1.89
44729429--44729479	26	2.0	26	92	0	84	31	7	27	33	1.85
44732801--44732932	44	2.9	44	76	16	119	25	17	31	25	1.97
44732739--44732956	47	4.7	48	77	11	161	25	19	31	24	1.98
44741185--44741219	18	2.0	17	88	5	52	71	2	2	22	1.13
44743505--44743551	18	2.5	19	86	6	60	27	12	2	57	1.47
44752551--44752758	40	5.2	40	82	1	184	21	26	24	27	1.99
44752577--44752758	80	2.3	80	83	0	220	21	26	23	28	1.99
44757139--44757241	29	3.5	28	79	7	91	20	16	33	29	1.94
44762011--44762113	29	3.5	28	79	7	91	20	16	33	29	1.94
44768617--44768824	40	5.2	40	81	1	175	22	26	23	27	1.99
44768671--44768824	80	1.9	80	86	0	218	22	26	22	27	1.99
44777719--44777756	20	1.9	20	88	0	58	52	10	2	34	1.50
44780963--44781147	40	4.7	40	84	7	227	23	22	28	25	1.99
44780963--44781145	79	2.3	81	85	7	241	24	22	27	25	2.00
44780964--44781180	79	2.7	78	79	12	237	25	21	27	25	1.99
44788991--44789175	40	4.7	40	84	7	227	23	22	28	25	1.99
44788991--44789173	79	2.3	81	85	7	241	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44788992--44789208	79	2.7	78	79	12	237	25	21	27	25	1.99
44795494--44795598	42	2.5	42	89	3	149	31	15	24	28	1.95
44795847--44795892	19	2.5	19	92	3	76	13	39	30	17	1.87
44807915--44808205	40	7.3	39	88	5	399	26	23	26	23	2.00
44807915--44808201	120	2.4	120	90	1	461	26	22	27	23	2.00
44809718--44809795	20	3.8	20	75	9	77	35	25	11	26	1.90
44809721--44809802	42	2.0	42	87	4	121	34	25	13	26	1.93
44817370--44817467	28	3.5	28	84	4	108	29	16	24	29	1.96
44830207--44830269	25	2.5	24	80	7	72	74	1	17	6	1.10
44831432--44831496	29	2.2	29	94	0	112	30	16	27	24	1.97
44846857--44847026	46	3.7	45	75	7	171	30	28	19	21	1.98
44857492--44857566	14	4.9	15	69	18	57	58	1	9	30	1.38
44861585--44861666	33	2.5	31	80	9	94	71	1	3	23	1.08
44861596--44861667	31	2.3	29	82	13	90	72	0	2	25	0.98
44862077--44862158	30	2.7	30	92	7	148	14	41	29	14	1.86
44862098--44862151	17	3.4	17	65	19	53	12	40	27	18	1.87
44866290--44866451	49	3.3	49	94	1	283	32	27	6	33	1.83
44868996--44869250	55	4.8	54	76	6	211	22	23	16	36	1.94
44873419--44873488	27	2.5	28	95	2	124	28	14	27	30	1.95
44873419--44873500	27	3.0	27	85	8	78	29	15	24	30	1.96
44875471--44875650	30	6.4	28	80	14	187	48	15	17	18	1.81
44875471--44875620	79	1.9	79	97	0	282	49	14	16	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44875471--44875626	24	6.2	24	78	14	172	49	14	16	19	1.80
44875471--44875626	6	25.8	6	76	15	153	49	14	16	19	1.80
44875768--44875833	27	2.5	26	82	7	78	39	21	22	16	1.92
44875787--44875841	27	2.0	27	86	6	76	36	20	25	18	1.94
44875792--44875849	27	2.1	27	84	6	73	36	27	20	15	1.93
44876006--44876064	22	2.7	22	81	0	64	32	22	25	20	1.98
44876152--44876234	27	3.1	26	89	5	121	36	21	22	19	1.95
44876261--44876291	16	1.9	16	93	0	53	29	16	25	29	1.96
44876433--44876620	54	3.5	54	87	1	252	25	21	19	34	1.96
44876462--44876628	54	3.1	54	90	1	255	25	19	19	36	1.95
44876462--44876620	27	5.9	27	87	0	228	24	20	19	35	1.95
44876633--44877260	27	23.3	27	84	4	723	41	9	21	27	1.84
44879273--44879458	30	6.4	30	83	12	244	48	15	17	18	1.81
44879273--44879434	6	26.8	6	78	15	174	48	14	17	19	1.80
44879576--44879641	27	2.5	26	82	7	78	39	21	22	16	1.92
44879595--44879649	27	2.0	27	86	6	76	36	20	25	18	1.94
44879600--44879657	27	2.1	27	84	6	73	36	27	20	15	1.93
44879814--44879872	22	2.7	22	81	0	64	32	22	25	20	1.98
44879960--44880043	27	3.2	26	86	5	105	39	21	20	19	1.93
44880056--44880086	16	1.9	16	93	0	53	29	16	25	29	1.96
44880253--44880421	27	6.3	27	86	2	234	24	19	19	36	1.95
44880228--44880421	53	3.6	52	85	4	235	25	20	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44880426--44881051	27	23.2	27	84	4	780	40	9	22	27	1.85
44890936--44891028	39	2.4	39	88	0	141	25	21	26	25	1.99
44895314--44895414	28	3.5	28	86	6	114	29	13	26	29	1.94
44903264--44903364	28	3.5	28	86	6	114	29	13	26	29	1.94
44907869--44907914	19	2.5	18	79	6	56	39	21	4	34	1.73
44910652--44910742	37	2.4	37	92	1	155	24	32	18	24	1.97
44910838--44911149	49	6.4	49	95	0	536	29	33	8	28	1.87
44911044--44911124	27	3.2	27	61	16	64	30	33	4	30	1.79
44913871--44913969	41	2.4	41	79	11	105	25	23	24	27	2.00
44914453--44914790	29	11.7	29	96	0	586	24	31	17	26	1.97
44914985--44915072	40	2.2	40	83	0	104	25	27	20	27	1.99
44916884--44916974	37	2.4	37	92	1	155	24	32	18	24	1.97
44917070--44917381	49	6.4	49	95	0	536	29	33	8	28	1.87
44917276--44917356	27	3.2	27	61	16	64	30	33	4	30	1.79
44923267--44923367	28	3.6	28	80	1	112	29	34	8	26	1.87
44924995--44925054	29	2.1	29	90	6	95	40	30	0	30	1.57
44925008--44925052	14	3.1	14	75	6	54	42	31	0	26	1.56
44927555--44927595	21	1.9	22	85	5	57	41	4	7	46	1.53
44928139--44928194	16	3.2	17	75	10	51	48	0	0	51	1.00
44935166--44935317	40	3.8	40	84	5	173	23	25	22	28	1.99
44937831--44937981	40	3.8	40	78	6	155	27	23	27	21	1.99
44937833--44937981	80	1.9	79	84	6	203	26	24	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44945866--44945995	40	3.2	40	75	2	136	23	23	28	24	2.00
44951743--44951771	2	14.5	2	100	0	58	51	0	0	48	1.00
44959164--44959289	46	2.7	46	93	0	207	22	22	26	29	1.99
44963698--44963758	30	2.0	30	83	0	77	31	22	8	37	1.84
44970183--44970352	46	3.7	45	77	10	182	23	21	27	27	1.99
44970180--44970350	93	1.8	93	91	2	281	23	21	27	27	1.99
44975656--44975690	18	1.9	18	100	0	70	34	0	37	28	1.58
44977025--44977146	40	3.0	40	89	0	181	23	20	23	31	1.98
44977025--44977180	40	3.9	38	85	6	116	23	21	24	30	1.99
44977025--44977172	80	1.9	80	85	8	212	22	21	24	31	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318