genome.fa.s2.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  164  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50682412--50682602	40	4.8	40	88	2	231	27	23	26	22	2.00
50685722--50685797	28	2.9	25	77	14	64	31	15	10	42	1.81
50685943--50685984	12	3.5	12	86	0	57	19	23	0	57	1.41
50685942--50685984	18	2.4	18	77	14	52	20	23	0	55	1.43
50688652--50688800	80	1.9	80	81	2	183	22	30	24	22	1.99
50688693--50688800	40	2.7	38	85	8	128	21	29	25	23	1.99
50693130--50693296	40	4.2	40	82	2	185	24	26	22	26	2.00
50701130--50701296	40	4.2	40	82	2	185	24	26	22	26	2.00
50706557--50706633	39	2.0	39	97	0	145	36	3	20	38	1.71
50709083--50709116	17	2.0	17	100	0	68	47	11	17	23	1.81
50715645--50715817	46	3.7	46	75	11	156	23	20	26	30	1.99
50716042--50716079	19	2.0	20	85	15	53	36	0	23	39	1.55
50717454--50717507	27	2.0	27	88	0	81	33	20	18	27	1.96
50717500--50717556	27	2.1	27	87	6	80	42	19	8	29	1.81
50717539--50717781	27	9.1	26	81	7	204	39	18	9	32	1.83
50717517--50717723	81	2.6	81	81	6	260	38	19	10	31	1.85
50717705--50717836	27	5.0	26	76	10	108	43	16	8	31	1.77
50717571--50717836	81	3.3	80	80	4	207	40	17	9	32	1.82
50722851--50723044	40	4.9	40	93	0	327	22	27	23	26	1.99
50722825--50723044	80	2.8	80	88	3	331	21	27	23	27	1.99
50725858--50726043	40	4.7	40	88	5	227	26	26	21	25	1.99
50729561--50729640	29	2.7	29	86	5	108	27	32	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50737387--50737416	2	15.5	2	93	6	53	50	0	0	50	1.00
50744544--50744570	2	13.5	2	100	0	54	51	0	0	48	1.00
50744601--50744680	29	2.7	29	86	5	108	27	32	15	25	1.95
50746192--50746221	2	15.0	2	100	0	60	50	0	0	50	1.00
50746948--50747454	256	2.0	254	86	5	711	31	21	14	31	1.93
50753431--50753512	32	2.6	31	81	11	105	37	8	4	48	1.55
50754678--50755021	179	2.0	169	84	8	449	26	11	18	43	1.84
50757047--50757125	41	1.9	42	84	2	106	50	5	5	39	1.46
50757213--50757254	15	2.7	16	82	14	52	33	0	0	66	0.92
50759964--50760005	19	2.2	20	86	4	59	26	0	14	59	1.35
50760100--50760198	43	2.3	42	82	1	126	33	17	21	28	1.95
50760661--50760709	24	2.0	26	88	8	75	55	2	0	42	1.11
50760668--50760726	23	2.5	25	82	17	74	52	1	1	44	1.21
50761113--50761181	30	2.3	30	89	0	111	26	49	5	18	1.70
50761655--50761701	15	3.2	15	73	14	53	36	2	0	61	1.08
50761652--50761789	23	5.7	25	72	10	99	36	5	2	56	1.33
50761748--50761857	29	4.0	28	71	15	88	30	6	4	59	1.43
50761808--50761870	25	2.5	24	84	7	72	30	4	6	58	1.43
50761921--50761976	25	2.3	24	79	14	62	37	16	3	42	1.65
50762880--50763148	143	1.9	145	81	6	334	42	3	13	40	1.61
50763344--50763387	20	2.1	21	83	4	54	75	6	11	6	1.20
50776817--50776883	30	2.3	30	89	7	102	25	35	22	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50776903--50776989	43	2.0	42	95	2	156	18	24	11	45	1.82
50777740--50778079	180	1.9	180	86	1	484	31	19	10	39	1.84
50778636--50778979	50	6.9	50	73	5	300	30	24	18	27	1.98
50778697--50778978	100	2.8	101	87	1	404	30	24	18	26	1.98
50779328--50779374	19	2.3	20	82	10	60	48	14	0	36	1.44
50779522--50779586	34	1.9	34	100	0	130	33	24	4	36	1.76
50779721--50779766	21	2.2	20	96	3	83	30	13	13	43	1.81
50785574--50785625	26	2.0	26	84	0	68	21	25	19	34	1.96
50785687--50785745	26	2.5	22	75	21	64	20	22	16	40	1.91
50785696--50785746	26	1.9	27	92	4	86	19	19	19	41	1.91
50785910--50785961	23	2.2	24	83	10	63	50	3	19	26	1.65
50790230--50790270	20	2.0	22	85	9	59	48	4	0	46	1.23
50791151--50791202	26	2.0	26	84	3	68	30	15	3	50	1.62
50796115--50796147	11	3.0	11	95	0	57	54	0	3	42	1.15
50801534--50801773	49	4.9	49	91	3	376	33	9	27	29	1.88
50801534--50801773	96	2.4	99	90	2	378	33	9	27	29	1.88
50801765--50801916	48	3.2	48	95	0	268	33	7	26	32	1.84
50801956--50802046	37	2.4	37	96	1	164	23	18	32	25	1.97
50812668--50812850	40	4.6	40	86	3	253	24	26	24	25	2.00
50817327--50817396	27	2.5	28	86	2	97	32	25	14	27	1.94
50817404--50817510	42	2.5	42	96	0	196	22	33	14	28	1.94
50819733--50819831	28	3.5	28	81	9	112	29	25	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50827395--50827493	28	3.5	28	81	9	112	29	25	16	29	1.96
50830202--50830300	28	3.5	28	81	9	112	29	25	16	29	1.96
50837866--50837964	28	3.5	28	81	9	112	29	25	16	29	1.96
50841292--50841321	12	2.6	12	94	5	53	30	26	16	26	1.97
50845149--50845259	43	2.6	43	91	1	170	31	31	24	12	1.92
50845252--50845375	38	3.2	38	82	2	140	29	26	22	21	1.99
50848856--50848924	29	2.3	29	85	9	86	49	13	14	23	1.78
50855316--50855358	22	2.0	22	100	0	86	27	13	23	34	1.93
50860307--50860415	53	2.1	53	94	0	191	32	12	17	37	1.88
50860535--50860578	20	2.2	20	84	8	54	47	15	2	34	1.58
50864634--50864716	29	2.9	29	98	0	157	26	30	14	28	1.95
50872534--50872615	29	2.8	29	98	0	155	25	30	14	29	1.95
50880821--50880943	46	2.7	46	85	2	167	24	31	15	28	1.95
50886822--50886873	27	2.0	26	84	3	68	34	21	26	17	1.95
50890968--50890996	7	4.1	7	100	0	58	72	0	0	27	0.85
50891178--50891216	15	2.4	17	83	12	55	48	2	2	46	1.29
50899099--50899141	8	5.4	8	83	10	52	67	2	0	30	1.03
50899103--50899141	16	2.5	15	91	8	60	66	2	0	30	1.05
50899313--50899360	24	2.0	24	91	4	78	52	4	8	35	1.51
50899313--50899376	22	2.7	25	83	11	82	53	4	7	34	1.51
50899402--50899529	25	5.3	25	70	15	81	57	2	4	35	1.32
50900019--50900153	30	4.5	30	86	1	157	22	3	47	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50901014--50901061	15	3.3	15	82	5	53	64	6	12	16	1.46
50901025--50901249	89	2.5	89	89	3	362	38	19	17	24	1.93
50901213--50901239	14	1.9	14	100	0	54	62	7	14	14	1.51
50901045--50901461	212	2.0	211	94	1	728	36	20	17	24	1.94
50901425--50901451	14	1.9	14	100	0	54	62	7	14	14	1.51
50901256--50901526	89	3.0	89	92	0	452	36	19	16	26	1.93
50901342--50901665	164	2.0	164	94	0	567	33	21	17	27	1.95
50901431--50901601	75	2.3	75	94	0	297	35	20	17	26	1.95
50909296--50909446	40	3.8	40	77	13	134	27	23	26	22	2.00
50909333--50909462	40	3.2	40	77	4	138	24	23	27	23	2.00
50913178--50913213	12	3.0	12	83	0	54	44	2	22	30	1.67
50916780--50916827	16	3.1	15	90	6	69	64	2	2	31	1.16
50916776--50916827	8	6.5	8	82	8	61	65	1	1	30	1.14
50916982--50917046	25	2.8	24	83	6	80	52	6	7	33	1.55
50917690--50917824	30	4.5	30	86	1	157	22	3	47	26	1.68
50919252--50919297	24	1.9	24	82	8	58	30	30	15	23	1.95
50919368--50919398	2	15.5	2	93	0	53	48	0	3	48	1.17
50936540--50936669	40	3.3	39	83	4	163	23	25	28	23	1.99
50944604--50944733	40	3.3	39	83	4	163	23	25	28	23	1.99
50953129--50953179	25	2.0	25	92	0	84	43	23	5	27	1.77
50956171--50956233	32	2.0	32	93	6	110	20	20	25	33	1.97
50961071--50961194	43	2.9	42	78	8	142	32	25	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50984302--50984487	40	4.7	40	86	5	227	25	26	22	25	2.00
50991070--50991255	80	2.3	81	81	9	220	26	26	20	25	1.99
50991070--50991255	40	4.7	40	85	5	193	26	26	20	25	1.99
50993628--50993682	12	4.8	11	79	16	58	30	0	3	65	1.10
50993628--50993690	23	2.8	23	76	16	69	31	0	3	65	1.09
50994555--50994616	29	2.1	30	90	3	99	27	4	11	56	1.54
50994740--50994772	11	2.9	12	86	13	52	66	0	0	33	0.92
50997557--50997679	42	2.9	43	75	7	126	34	20	14	30	1.93
50997543--50997691	42	3.5	43	70	11	119	32	22	15	28	1.95
50999265--50999292	14	2.0	14	100	0	56	42	0	28	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318