genome.fa.s2.2.7.7.80.10.50.1000.310.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  310  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96513073--96513109	16	2.3	17	81	13	51	59	2	0	37	1.12
96513145--96513201	15	3.5	15	73	17	60	50	1	0	47	1.11
96514404--96514454	25	2.0	25	92	0	84	27	15	13	43	1.85
96515955--96515997	22	1.9	23	85	4	61	51	20	13	13	1.76
96520251--96520989	154	4.7	155	76	6	659	37	17	15	29	1.91
96520316--96520987	312	2.2	310	88	2	970	36	17	16	29	1.91
96524351--96524405	2	28.5	2	78	7	60	41	0	7	50	1.30
96524355--96524402	25	1.9	25	91	0	78	39	0	8	52	1.32
96526015--96526045	2	15.5	2	100	0	62	51	0	0	48	1.00
96530079--96530142	31	2.1	30	88	5	94	39	12	14	34	1.83
96532144--96532195	6	8.7	6	91	0	77	0	13	34	51	1.41
96532144--96532206	18	3.5	18	84	0	81	0	12	33	53	1.39
96532942--96533010	31	2.3	29	85	7	86	26	14	11	47	1.78
96533914--96533968	16	3.2	18	75	15	62	40	7	3	49	1.48
96537204--96537234	2	15.5	2	100	0	62	51	0	0	48	1.00
96537807--96537974	47	3.5	47	82	6	185	32	30	16	21	1.95
96546803--96546865	31	2.0	31	100	0	126	28	12	23	34	1.92
96548562--96548662	52	2.0	51	96	2	184	53	8	5	31	1.56
96549037--96549167	66	2.0	66	90	0	208	34	12	10	42	1.77
96561498--96561538	22	1.9	21	90	5	64	14	21	0	63	1.30
96562921--96562970	26	1.9	26	83	0	64	40	22	2	36	1.65
96562901--96562970	13	5.3	13	68	1	50	37	24	2	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96563598--96563648	23	2.2	24	85	3	68	33	25	29	11	1.91
96565700--96565748	21	2.5	18	73	20	53	48	4	0	46	1.20
96567422--96567468	21	2.1	22	84	7	60	48	0	4	46	1.21
96567586--96567651	6	11.0	6	88	0	96	48	1	3	46	1.26
96567586--96567651	4	16.5	4	88	0	96	48	1	3	46	1.26
96580060--96580273	46	4.6	46	89	2	252	42	13	23	20	1.87
96580060--96580273	93	2.3	92	84	4	261	42	13	23	20	1.87
96580569--96580601	17	2.0	17	94	5	59	48	0	15	36	1.45
96582363--96582544	46	4.0	46	85	4	233	21	21	14	41	1.90
96582368--96582544	92	1.9	91	89	4	275	21	22	14	41	1.89
96582921--96582969	23	2.1	23	84	3	62	34	26	22	16	1.95
96582934--96583048	23	4.9	23	70	12	81	31	24	27	16	1.96
96586954--96587063	26	4.2	26	97	0	184	33	5	24	36	1.79
96588617--96588755	27	5.2	27	87	3	174	17	23	23	35	1.96
96588617--96588755	54	2.6	55	88	3	194	17	23	23	35	1.96
96592723--96592832	26	4.2	26	97	0	184	33	5	24	36	1.79
96594387--96594524	27	5.2	27	85	6	165	18	23	23	35	1.95
96594387--96594524	53	2.6	54	86	5	183	18	23	23	35	1.95
96595657--96595722	17	3.7	18	87	6	98	36	13	12	37	1.82
96596113--96596548	83	5.2	83	94	0	737	27	19	20	32	1.97
96596472--96597065	119	5.0	119	95	0	1026	29	18	18	33	1.95
96597057--96597236	44	4.1	44	71	11	161	29	25	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96598115--96598165	9	5.4	9	77	13	50	1	15	0	82	0.76
96598114--96598174	21	2.8	21	80	16	70	3	16	0	80	0.84
96598119--96598177	14	4.7	13	74	18	54	1	16	0	81	0.78
96598119--96598167	8	5.7	9	81	11	50	2	18	0	79	0.83
96600798--96600824	14	1.9	14	100	0	54	44	3	7	44	1.49
96603906--96603955	19	2.6	19	77	0	55	64	0	2	34	1.05
96603944--96603987	17	2.8	15	78	21	54	63	0	2	34	1.07
96604461--96604532	19	3.9	18	87	10	103	36	13	11	38	1.81
96604454--96604532	35	2.2	37	86	13	121	35	15	10	39	1.81
96604475--96604530	17	3.5	15	88	9	60	35	16	10	37	1.83
96604918--96605353	83	5.2	83	96	0	764	26	19	21	32	1.97
96605277--96605875	119	5.0	119	93	1	988	29	18	18	34	1.94
96605277--96605875	237	2.5	238	93	0	1011	29	18	18	34	1.94
96605861--96605947	44	2.0	44	90	4	140	27	26	14	31	1.95
96608508--96608628	47	2.6	47	89	1	181	25	16	26	31	1.96
96608472--96608679	93	2.1	97	79	8	219	26	16	27	28	1.97
96610613--96610672	22	2.7	22	89	5	95	5	13	0	81	0.84
96610622--96610648	14	1.9	14	100	0	54	3	14	0	81	0.82
96613499--96613543	23	1.9	24	86	4	65	64	0	0	35	0.94
96613516--96613558	15	2.8	14	80	19	50	65	0	0	34	0.93
96614029--96614100	19	3.9	19	83	10	105	37	12	11	38	1.79
96614029--96614112	17	4.8	17	79	18	84	38	10	11	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96614305--96614353	21	2.5	18	73	20	53	48	4	0	46	1.20
96629317--96629368	7	7.6	7	76	2	52	55	23	1	19	1.53
96629317--96629368	21	2.5	21	87	3	70	55	23	1	19	1.53
96629796--96629825	5	5.8	5	92	7	51	83	0	0	16	0.65
96629796--96629826	16	1.9	16	100	0	62	83	0	0	16	0.64
96629796--96629825	11	2.9	10	95	5	51	83	0	0	16	0.65
96631070--96631117	25	1.9	25	82	0	60	31	18	0	50	1.48
96631273--96631454	46	4.0	46	94	1	303	23	23	14	39	1.91
96636065--96636112	25	1.9	25	82	0	60	31	18	0	50	1.48
96636268--96636495	46	5.0	46	92	1	350	22	23	14	39	1.91
96638623--96638665	11	3.7	11	82	11	50	60	2	0	37	1.10
96638628--96638706	30	2.6	30	75	13	72	54	5	0	40	1.22
96640583--96640690	53	2.0	53	98	0	207	34	22	7	36	1.82
96642747--96642856	26	4.2	26	97	0	184	33	5	24	36	1.79
96656700--96656732	16	2.1	16	88	5	50	48	0	0	51	1.00
96661830--96661897	34	2.0	34	91	0	109	45	8	22	23	1.80
96663630--96663664	19	1.9	19	88	11	56	68	0	0	31	0.90
96663933--96663977	22	2.0	22	86	4	63	37	17	6	37	1.76
96663956--96664029	19	3.9	19	96	3	141	36	16	10	36	1.83
96663949--96664029	37	2.2	38	91	8	141	35	17	9	37	1.83
96663959--96664038	37	2.2	37	88	6	110	38	13	12	35	1.83
96664572--96664943	78	4.8	78	93	1	613	24	24	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96664572--96664943	155	2.4	156	91	1	613	24	24	19	31	1.98
96664975--96665135	87	1.9	87	83	6	211	26	23	19	30	1.98
96673102--96673133	2	16.0	2	93	0	55	53	0	0	46	1.00
96673386--96673461	22	3.7	21	76	15	68	40	17	6	35	1.75
96673415--96673512	35	2.7	37	87	12	150	35	16	10	37	1.82
96673422--96673512	19	4.9	19	92	8	161	36	15	10	37	1.83
96673631--96673669	21	1.9	20	84	5	51	10	2	15	71	1.23
96678097--96678139	19	2.1	20	83	12	52	46	9	2	41	1.48
96679097--96679127	2	15.5	2	100	0	62	48	0	0	51	1.00
96679182--96679225	23	1.9	23	90	9	72	65	0	4	29	1.12
96679580--96679665	35	2.4	35	74	12	86	60	4	2	32	1.30
96679615--96679684	22	3.1	22	76	17	72	57	4	2	35	1.33
96681694--96681723	15	2.0	15	93	0	51	56	10	13	20	1.65
96681720--96681889	88	1.9	88	83	4	218	33	18	15	31	1.93
96681551--96682125	247	2.3	247	79	10	619	35	19	16	28	1.93
96681873--96682144	91	3.0	86	83	7	348	39	16	15	28	1.89
96682053--96682424	101	3.8	98	78	15	394	37	18	17	26	1.93
96681872--96682417	190	2.9	187	87	7	743	38	17	16	27	1.91
96682162--96682336	89	2.0	87	94	2	305	34	18	18	27	1.95
96690663--96690704	21	2.0	21	95	0	75	30	7	23	38	1.82
96692249--96692291	21	2.0	21	100	0	86	16	23	9	51	1.73
96694963--96695006	23	1.9	23	86	9	63	68	0	4	27	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96695361--96695447	22	3.7	22	71	16	68	60	6	2	29	1.35
96697138--96697178	21	1.9	22	90	5	66	43	19	12	24	1.85
96698173--96698230	30	1.9	30	85	0	80	18	34	31	15	1.93
96702004--96702057	27	2.0	27	96	0	99	46	18	24	11	1.81
96703034--96703115	26	3.2	26	92	0	137	31	6	24	37	1.80
96704594--96704646	26	2.0	26	85	7	72	37	22	15	24	1.92
96713629--96713926	3	99.7	3	67	14	98	25	6	5	62	1.41
96713816--96713908	23	4.2	23	80	5	95	30	6	2	61	1.33
96714140--96714170	2	15.5	2	93	0	53	48	3	0	48	1.17
96720080--96720206	44	2.8	45	80	3	150	33	17	24	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318