genome.fa.s2.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  155  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47647093--47647132	21	1.9	21	100	0	80	35	17	17	30	1.93
47648245--47648616	144	2.6	144	82	5	439	28	18	28	23	1.98
47648233--47648614	48	8.0	48	80	5	344	28	18	28	24	1.98
47652182--47652257	21	3.5	21	70	16	64	38	26	13	22	1.91
47654283--47654414	29	4.6	29	83	1	149	25	32	16	25	1.96
47662222--47662353	29	4.6	29	83	1	149	25	32	16	25	1.96
47664554--47664668	45	2.6	45	80	2	133	26	13	26	32	1.94
47666024--47666194	93	1.8	93	94	0	306	26	29	21	21	1.99
47666019--47666191	46	3.8	45	79	10	206	27	28	21	21	1.99
47673905--47674031	45	2.8	45	87	0	182	22	12	29	35	1.91
47682467--47682642	46	3.8	46	79	12	207	30	29	19	20	1.97
47682475--47682645	93	1.8	93	93	0	297	29	29	19	20	1.97
47690071--47690289	122	1.8	120	92	2	375	30	18	11	39	1.86
47694693--47694719	12	2.2	12	100	0	54	44	7	7	40	1.60
47709479--47709536	24	2.5	22	81	10	71	46	18	13	20	1.83
47711006--47711037	14	2.3	14	100	0	64	87	0	0	12	0.54
47713026--47713106	22	3.6	22	75	6	74	40	13	14	30	1.85
47713673--47713702	12	2.6	12	94	5	53	43	0	6	50	1.28
47732258--47732356	28	3.5	28	81	9	112	29	25	16	29	1.96
47739672--47739857	40	4.7	40	85	5	218	25	22	26	25	2.00
47739728--47739880	80	1.9	79	81	9	186	26	20	26	26	1.99
47743732--47743900	40	4.2	40	80	4	173	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47751763--47751931	40	4.2	40	80	4	173	23	26	21	28	1.99
47753588--47753681	29	3.2	29	92	0	152	25	28	14	30	1.95
47761323--47761427	29	3.6	29	80	2	95	25	32	17	24	1.97
47761382--47761450	27	2.5	28	95	4	122	26	28	15	28	1.96
47768731--47768888	29	5.4	29	87	4	203	25	29	16	27	1.97
47773084--47773197	39	2.9	39	86	1	156	23	31	21	23	1.98
47778545--47778659	45	2.6	44	77	8	119	20	14	27	37	1.92
47788306--47788406	28	3.5	28	86	6	114	29	13	26	29	1.94
47798630--47798896	46	5.7	46	74	11	168	26	18	29	25	1.98
47805967--47806176	40	5.2	40	91	2	298	24	21	26	27	1.99
47805967--47806207	40	6.1	40	90	1	204	23	21	26	27	1.99
47810160--47810387	40	5.7	40	92	3	379	25	27	22	24	2.00
47815927--47815964	7	5.4	7	100	0	76	28	0	55	15	1.41
47827880--47827924	22	2.2	20	88	8	63	37	0	0	62	0.96
47827883--47827926	14	3.1	14	87	9	54	38	0	0	61	0.96
47827940--47828000	24	2.5	25	84	5	81	52	0	1	45	1.10
47827947--47827997	25	2.0	25	88	7	77	52	0	1	45	1.12
47831634--47831673	20	2.0	21	85	5	55	57	0	7	35	1.27
47832059--47832128	35	2.0	35	100	0	140	40	22	11	25	1.88
47836949--47837235	47	6.1	47	92	0	450	34	12	27	25	1.91
47836980--47837051	22	3.1	22	64	24	58	33	13	29	23	1.93
47837071--47837145	22	3.3	22	66	23	64	34	13	26	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47837209--47837345	46	3.0	46	90	0	202	34	10	31	24	1.89
47845390--47845448	29	2.0	31	86	6	86	38	0	42	18	1.51
47845557--47845607	16	3.3	16	69	20	54	33	0	45	21	1.52
47845555--47845611	30	1.9	29	92	3	96	38	0	42	19	1.51
47851611--47851663	25	2.1	25	89	0	79	22	22	26	28	1.99
47857729--47857767	18	2.2	18	86	9	53	33	2	0	64	1.08
47858579--47858653	37	2.0	37	97	0	141	36	18	14	30	1.91
47863171--47863333	40	4.1	38	86	7	157	23	26	22	27	2.00
47863171--47863333	80	2.0	80	84	0	209	23	26	22	27	2.00
47864683--47864932	40	6.2	40	91	1	385	22	28	24	25	1.99
47871437--47871534	39	2.5	39	84	0	133	26	21	28	23	1.99
47871386--47871534	79	1.9	80	86	5	214	25	21	28	24	1.99
47873233--47873414	39	4.7	38	84	7	215	25	28	22	23	1.99
47881308--47881491	40	4.6	39	78	12	180	25	28	23	23	2.00
47881310--47881492	79	2.3	81	81	9	207	25	27	23	23	2.00
47882489--47882513	12	2.1	12	100	0	50	32	32	0	36	1.58
47883601--47883651	24	2.1	24	96	0	93	29	17	11	41	1.85
47890906--47891077	62	2.7	64	78	6	181	22	19	30	27	1.98
47890906--47891096	63	3.0	63	79	3	197	21	19	29	28	1.98
47891748--47891801	22	2.5	22	84	6	74	18	12	14	53	1.72
47898950--47898993	18	2.5	18	88	3	63	50	4	0	45	1.22
47900781--47900828	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47901882--47901932	17	3.0	17	77	8	59	68	0	0	31	0.90
47901882--47901932	16	3.1	16	91	2	75	68	0	0	31	0.90
47902437--47902468	6	5.3	6	92	0	55	18	3	0	78	0.89
47902635--47902709	36	2.1	36	100	0	150	45	8	2	44	1.47
47902845--47902887	5	8.6	5	85	14	54	83	0	0	16	0.64
47907302--47907331	5	5.8	5	92	7	51	83	0	0	16	0.65
47910788--47910839	22	2.4	22	86	0	77	9	28	28	32	1.89
47921672--47921710	20	2.0	20	89	0	60	53	5	7	33	1.51
47921680--47921722	20	2.2	20	86	0	59	53	6	2	37	1.41
47921589--47921809	111	2.0	110	84	5	284	51	7	8	33	1.60
47922113--47922230	60	2.0	59	93	1	200	33	6	12	47	1.68
47922469--47922536	32	2.1	32	97	0	127	23	23	7	45	1.78
47927433--47927468	8	4.5	8	100	0	72	63	0	0	36	0.94
47928329--47928417	44	2.0	43	82	8	108	16	17	28	37	1.92
47930504--47930573	27	2.6	27	95	2	122	30	27	14	28	1.95
47934771--47934799	14	2.1	14	100	0	58	51	6	0	41	1.28
47943223--47943429	53	3.8	54	80	1	227	20	24	17	37	1.94
47944578--47944619	22	1.9	22	95	0	75	26	23	19	30	1.98
47945603--47945746	43	3.4	43	81	4	148	22	16	29	31	1.96
47945648--47945763	43	2.7	42	82	1	133	21	14	31	32	1.93
47953140--47953458	48	6.6	47	78	7	336	26	19	27	25	1.99
47953124--47953458	96	3.5	96	85	4	390	26	19	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47953140--47953461	144	2.2	145	87	4	463	27	19	27	25	1.99
47956769--47956976	40	5.2	40	83	2	231	27	26	20	25	1.99
47962185--47962286	28	3.5	29	81	6	109	28	27	14	29	1.95
47969328--47969429	28	3.5	29	81	6	109	28	27	14	29	1.95
47971150--47971293	41	3.5	40	72	14	107	29	14	22	34	1.93
47971144--47971299	83	1.9	83	82	7	201	29	14	23	33	1.93
47974710--47974787	29	2.7	29	83	0	102	21	33	17	26	1.96
47976759--47976966	40	5.3	39	89	2	143	26	27	24	22	2.00
47976796--47977039	40	6.1	40	92	0	339	27	25	22	23	2.00
47981478--47981615	31	4.5	31	73	10	104	18	21	18	42	1.89
47983071--47983097	2	13.5	2	100	0	54	48	0	0	51	1.00
47983964--47984305	131	2.6	129	77	8	322	34	18	19	27	1.95
47984054--47984440	132	3.0	131	82	4	406	33	18	19	28	1.95
47985094--47985126	2	16.5	2	100	0	66	51	0	0	48	1.00
47987355--47988826	131	11.2	131	90	1	2081	28	25	16	28	1.97
47990044--47990093	6	8.7	6	91	4	68	0	18	0	82	0.68
47992614--47992661	19	2.5	19	89	0	78	41	16	22	18	1.90
47992624--47992677	24	2.2	24	83	6	65	38	16	25	18	1.92
47994185--47994619	132	3.4	129	78	9	311	34	18	20	26	1.95
47994279--47994659	132	2.9	131	82	5	405	34	17	19	28	1.95
47995312--47995340	2	14.5	2	100	0	58	51	0	0	48	1.00
47997254--47997286	15	2.1	16	88	5	50	0	0	21	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48001074--48001147	29	2.6	29	95	0	139	27	31	14	27	1.95
48001015--48001147	58	2.3	58	80	2	133	24	33	17	24	1.96
48008760--48008889	40	3.2	40	83	4	165	23	29	25	22	1.99
48015467--48015634	40	4.2	40	82	1	185	24	26	22	26	2.00
48023468--48023635	40	4.2	40	82	1	185	24	26	22	26	2.00
48025737--48025762	13	2.0	13	100	0	52	61	7	0	30	1.24
48026803--48027032	27	8.4	27	77	9	101	31	8	19	40	1.82
48026877--48027032	54	2.9	54	74	9	156	30	7	21	41	1.81
48026985--48027158	81	2.1	81	82	2	206	37	7	21	33	1.81
48027042--48027191	81	1.9	81	89	0	237	35	8	24	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318