genome.fa.s2.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  203  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63790086--63790227	40	3.5	40	83	1	124	27	23	26	22	1.99
63790125--63790253	40	3.2	39	84	6	152	24	22	27	25	2.00
63793099--63793270	93	1.8	93	88	2	265	29	26	20	23	1.99
63793093--63793266	46	3.8	44	76	13	165	29	26	20	23	1.98
63801236--63801367	38	3.4	38	88	2	183	22	18	25	33	1.97
63805625--63805790	40	4.2	40	81	3	176	24	27	21	25	1.99
63805641--63805752	39	2.8	38	85	4	134	25	29	22	23	1.99
63805641--63805790	79	1.9	78	83	6	196	24	28	22	26	1.99
63806615--63806660	17	2.5	19	74	22	53	34	23	17	23	1.96
63815335--63815536	49	4.1	49	97	0	368	34	9	26	30	1.88
63815605--63815691	37	2.3	36	94	5	147	20	19	33	26	1.97
63817511--63817662	40	3.8	40	93	0	241	26	20	27	25	1.99
63818408--63818586	40	4.4	40	80	3	180	25	24	26	24	2.00
63818408--63818628	80	2.8	80	78	5	214	26	24	25	23	2.00
63818529--63818625	40	2.5	40	78	8	99	27	26	24	20	1.99
63820793--63821062	49	5.5	49	93	1	443	33	8	27	30	1.87
63820793--63821073	146	1.9	149	92	2	478	33	8	27	30	1.87
63821111--63821197	37	2.3	36	94	5	147	20	19	33	26	1.97
63825902--63826059	29	5.4	29	87	6	203	27	25	13	33	1.94
63825902--63826059	30	5.4	30	88	8	209	27	25	13	33	1.94
63825902--63826059	59	2.7	57	88	4	210	27	25	13	33	1.94
63831031--63831070	21	1.9	21	94	0	71	25	22	52	0	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63831368--63831657	42	6.7	42	83	6	314	25	21	21	31	1.98
63831368--63831657	87	3.4	84	82	4	348	25	21	21	31	1.98
63831368--63831657	129	2.2	126	81	7	325	25	21	21	31	1.98
63832408--63832445	18	2.1	18	100	0	76	31	21	18	28	1.97
63847236--63847266	16	1.9	16	93	0	53	35	22	0	41	1.54
63847233--63847272	20	2.0	20	85	0	53	40	20	0	40	1.52
63847457--63847711	55	4.8	54	79	7	238	21	25	17	35	1.95
63847504--63847700	108	1.8	110	86	4	292	22	25	17	34	1.95
63859413--63859476	20	3.2	20	95	0	110	34	10	21	32	1.89
63859417--63859471	11	5.4	11	70	16	55	36	12	20	30	1.90
63859523--63859641	23	5.1	23	95	2	220	28	21	21	28	1.99
63859521--63859641	47	2.6	47	97	1	226	28	22	20	28	1.99
63859523--63859662	70	2.0	71	92	4	239	27	22	22	27	1.99
63859856--63859919	31	2.1	31	87	0	92	37	15	21	25	1.93
63868114--63868286	45	3.8	46	78	17	198	21	21	28	27	1.99
63868114--63868283	93	1.8	92	93	1	295	21	21	28	27	1.99
63869961--63869989	15	1.9	15	100	0	58	48	20	6	24	1.74
63870878--63870917	21	2.0	20	85	5	53	67	17	7	7	1.38
63877444--63877473	10	3.0	10	95	0	51	43	0	0	56	0.99
63877491--63877549	28	2.2	28	85	8	79	47	18	1	32	1.59
63878331--63878375	14	3.2	14	80	0	54	48	24	0	26	1.51
63878532--63878669	41	3.4	40	86	7	188	19	21	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63878543--63878693	41	3.6	42	84	5	139	21	21	17	39	1.92
63880314--63880413	27	3.5	28	84	5	121	35	28	13	24	1.92
63897631--63897679	17	2.8	18	74	22	50	24	18	22	34	1.96
63898502--63898668	40	4.2	40	79	6	169	25	21	27	25	1.99
63909764--63909833	27	2.6	27	93	2	113	30	28	14	27	1.95
63917704--63917773	27	2.6	27	93	2	113	30	28	14	27	1.95
63928518--63928725	40	5.2	40	82	2	220	25	23	26	24	2.00
63933946--63934090	37	3.9	37	95	0	236	26	31	17	24	1.97
63934236--63934420	48	3.8	48	89	4	282	31	26	6	35	1.82
63934236--63934419	98	1.9	97	89	4	291	30	26	6	35	1.82
63934390--63934583	47	4.1	47	88	4	275	27	28	10	32	1.90
63934483--63934554	22	3.1	22	64	24	58	23	29	13	33	1.93
63940118--63940244	43	3.0	43	75	5	123	33	22	18	26	1.96
63945302--63945341	21	1.9	21	85	10	55	25	20	22	32	1.98
63947880--63947917	16	2.4	16	86	4	51	57	0	13	28	1.36
63948229--63948269	20	2.0	20	85	0	55	43	2	14	39	1.59
63951837--63952064	48	4.8	48	81	1	233	26	32	15	24	1.95
63952409--63952490	30	2.7	30	94	0	137	36	24	4	34	1.77
63959628--63959760	48	2.8	49	76	15	143	29	27	18	24	1.98
63961995--63962097	29	3.6	29	81	2	118	21	16	33	29	1.95
63970631--63970704	29	2.6	29	95	0	139	27	14	31	27	1.95
63970688--63970762	28	2.6	29	78	4	89	22	20	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63978516--63978647	29	4.6	29	84	1	140	25	17	32	25	1.97
63984222--63984343	49	2.5	50	82	4	140	27	27	17	27	1.97
63984323--63984436	46	2.5	44	84	9	142	24	28	19	27	1.98
63984368--63984487	46	2.6	47	85	5	145	23	29	19	28	1.98
63988327--63988408	42	2.0	42	95	0	146	37	15	18	28	1.91
63991744--63991790	22	2.3	19	85	14	58	44	2	0	53	1.12
63991746--63991787	16	2.7	15	79	20	50	45	2	0	52	1.13
63998754--63998795	16	2.6	16	84	0	57	50	14	23	11	1.76
63999007--63999121	29	4.0	29	76	6	101	26	15	29	28	1.96
64000197--64000230	18	1.9	18	88	5	52	41	20	8	29	1.82
64009263--64009326	28	2.3	28	94	0	110	21	18	35	23	1.95
64009643--64009730	27	3.3	27	86	0	113	40	14	14	29	1.86
64012239--64012277	21	1.9	20	85	15	53	35	0	23	41	1.55
64012755--64012892	40	3.5	40	81	0	168	14	26	18	41	1.88
64012755--64012918	20	8.2	20	70	11	86	15	26	17	40	1.89
64012755--64012905	80	1.9	80	84	2	205	15	25	17	41	1.88
64012888--64012931	20	2.2	20	83	0	52	18	36	18	27	1.94
64015633--64015932	49	6.1	49	96	0	519	33	8	27	31	1.86
64016001--64016087	37	2.3	36	94	5	147	20	19	33	26	1.97
64031763--64032012	40	6.2	40	91	1	385	22	28	24	25	1.99
64039939--64040188	40	6.2	40	91	1	385	22	28	24	25	1.99
64042557--64042618	30	2.1	30	96	0	115	27	16	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64049704--64049870	40	4.2	40	82	2	185	24	26	22	26	2.00
64057714--64057881	40	4.2	40	82	1	185	24	26	22	26	2.00
64060955--64061016	30	2.1	30	93	0	106	25	16	22	35	1.94
64065401--64065584	40	4.6	40	87	5	239	25	27	23	23	2.00
64076075--64076204	29	4.5	29	86	6	165	31	13	26	28	1.94
64087291--64087322	14	2.4	14	90	10	50	21	9	28	40	1.84
64087288--64087581	50	5.8	50	78	2	257	25	16	25	32	1.96
64087339--64087520	101	1.8	101	83	0	247	24	17	25	32	1.96
64097549--64097740	47	4.1	47	92	0	285	32	12	29	25	1.92
64097714--64097850	46	3.0	46	84	0	184	35	8	29	25	1.86
64110044--64110116	23	3.1	23	96	2	128	30	21	20	27	1.98
64110165--64110211	20	2.3	20	92	0	85	34	23	10	31	1.89
64113571--64113746	46	3.8	46	77	12	198	30	29	19	20	1.97
64113578--64113749	93	1.8	93	93	0	299	29	29	20	20	1.98
64114913--64115015	29	3.6	29	73	12	86	23	15	33	28	1.95
64117086--64117127	20	2.2	19	86	4	57	57	0	40	2	1.12
64118206--64118248	19	2.3	19	87	0	59	39	9	0	51	1.34
64120466--64120569	23	4.4	24	95	3	176	28	22	20	28	1.98
64120619--64120682	20	3.2	20	88	4	103	32	21	10	34	1.89
64127648--64127702	27	2.0	27	100	0	110	47	14	10	27	1.78
64131989--64132089	28	3.5	28	86	6	114	29	26	13	29	1.94
64139912--64140012	28	3.5	28	86	6	114	29	26	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64141439--64141541	29	3.5	30	89	2	147	28	15	33	23	1.95
64149174--64149201	7	4.0	7	100	0	56	28	14	0	57	1.38
64149188--64149282	31	3.1	31	98	0	181	23	22	15	38	1.92
64149474--64149640	24	7.0	24	92	3	248	25	22	23	28	1.99
64149473--64149640	71	2.3	71	89	4	248	25	22	23	29	1.99
64149691--64149750	20	3.0	20	90	0	102	33	20	11	35	1.88
64150966--64151030	27	2.4	27	84	5	87	20	24	20	35	1.96
64151146--64151229	27	3.1	26	71	23	66	26	8	26	39	1.84
64151145--64151650	54	9.4	52	80	4	185	33	8	22	35	1.84
64151208--64151447	27	8.9	27	85	3	313	38	9	24	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318