genome.fa.s2.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  129  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39429652--39429927	119	2.3	119	79	6	306	35	18	25	19	1.95
39431417--39431464	21	2.3	21	86	10	64	33	2	20	43	1.64
39433213--39433309	27	3.6	27	85	1	133	34	19	18	27	1.95
39433213--39433334	54	2.3	53	81	4	138	36	18	16	28	1.93
39433346--39433605	54	4.8	54	81	2	265	42	20	7	29	1.79
39433292--39433689	27	14.7	28	74	11	222	40	20	8	30	1.83
39434469--39434595	62	2.0	62	100	0	254	41	22	14	22	1.89
39434994--39435166	46	3.7	46	74	13	174	22	20	26	30	1.98
39434991--39435161	93	1.8	93	89	0	270	22	21	26	29	1.99
39436805--39436849	22	2.0	22	82	0	54	15	20	22	42	1.89
39438798--39438872	23	3.1	24	86	5	98	33	18	28	20	1.96
39443968--39444076	39	2.8	39	83	6	125	31	10	9	49	1.68
39444759--39444805	16	3.0	16	90	3	69	29	4	10	55	1.53
39450608--39450677	34	2.1	34	94	0	122	38	17	14	30	1.89
39452292--39452330	20	2.0	20	94	0	69	28	17	41	12	1.87
39452531--39452816	27	10.6	27	87	0	401	39	19	8	31	1.82
39452531--39452889	81	4.4	81	84	4	420	38	19	9	31	1.84
39452531--39452955	27	15.7	27	80	5	367	37	20	10	31	1.86
39452910--39453425	27	19.3	27	90	2	772	33	20	21	24	1.97
39453855--39453919	22	3.0	22	75	8	60	18	21	24	35	1.96
39454078--39454151	27	2.8	27	85	2	96	17	22	21	37	1.94
39454299--39454398	6	16.2	6	71	17	71	21	19	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39454299--39454399	31	3.3	31	87	0	130	21	18	12	46	1.83
39458055--39458143	38	2.4	38	92	1	144	39	11	16	32	1.84
39464240--39464304	22	3.0	22	75	8	69	30	21	26	21	1.98
39464447--39464568	41	3.0	42	87	2	185	28	27	21	22	1.99
39464803--39464972	27	6.3	26	80	9	123	28	10	20	40	1.85
39464843--39465478	27	23.7	27	80	4	610	30	10	21	38	1.86
39465407--39465555	80	1.9	81	81	4	185	30	12	20	36	1.90
39466737--39466858	43	2.9	42	82	2	154	30	16	24	28	1.96
39469547--39469628	29	2.8	29	98	0	155	25	30	14	29	1.95
39477430--39477511	29	2.8	29	98	0	155	25	30	14	29	1.95
39487409--39487777	125	2.9	127	82	4	386	27	15	26	30	1.96
39487409--39487777	168	2.2	168	84	2	479	27	15	26	30	1.96
39487409--39487794	43	9.1	43	81	5	435	27	16	26	29	1.96
39504208--39504282	26	2.8	27	81	16	70	37	24	10	28	1.88
39504397--39504491	27	3.5	26	81	8	109	16	21	21	41	1.91
39506129--39506210	23	3.6	23	81	3	103	36	17	23	23	1.94
39506873--39506912	21	1.9	21	94	0	71	40	17	0	42	1.49
39510608--39510785	38	4.7	37	78	5	169	32	24	20	22	1.98
39514916--39515026	57	1.9	58	88	1	170	27	29	19	23	1.98
39515449--39515484	19	1.9	18	88	5	54	55	11	0	33	1.35
39516838--39517032	38	5.0	39	81	8	204	31	24	22	22	1.98
39522588--39522664	38	2.0	38	94	0	136	28	27	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39522643--39522754	47	2.4	47	86	0	143	33	23	12	31	1.92
39525113--39525320	40	5.2	40	84	2	249	25	21	26	26	1.99
39530829--39530857	14	2.0	15	93	6	51	17	27	41	13	1.87
39531880--39532054	50	3.5	50	79	7	155	29	18	27	25	1.98
39532011--39532123	43	2.6	43	79	5	138	27	15	26	30	1.95
39535456--39535631	46	3.8	45	80	10	203	21	20	29	28	1.98
39535452--39535623	93	1.8	93	93	0	299	20	20	30	27	1.98
39537765--39537883	47	2.5	47	83	0	157	31	23	14	31	1.94
39539384--39539807	208	2.0	208	94	0	751	31	22	12	33	1.91
39543268--39543397	29	4.5	29	84	6	156	31	13	26	28	1.93
39545303--39545427	22	5.4	24	81	11	70	31	21	23	24	1.98
39545325--39545438	22	5.1	22	83	6	142	33	19	23	23	1.97
39548254--39548475	124	1.8	122	82	3	284	31	11	23	32	1.91
39548434--39548584	40	3.8	40	77	11	141	26	24	27	21	2.00
39548471--39548600	40	3.2	40	79	2	154	23	23	28	23	2.00
39548433--39548600	80	2.1	80	82	6	207	26	23	27	22	2.00
39555724--39555893	48	3.7	46	83	7	211	28	15	30	25	1.96
39558300--39558596	47	6.3	47	90	0	450	27	30	9	32	1.88
39558300--39558596	94	3.2	94	95	0	522	27	30	9	32	1.88
39562001--39562264	40	6.6	40	92	2	397	25	27	21	25	2.00
39564609--39564905	47	6.3	47	89	0	443	28	30	8	32	1.87
39564612--39564738	25	5.3	24	62	15	66	30	29	5	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39564609--39564905	94	3.2	94	93	0	497	28	30	8	32	1.87
39578140--39578249	43	2.5	46	83	8	154	34	6	11	47	1.66
39578225--39578262	13	2.9	13	81	14	51	39	0	13	47	1.42
39581245--39581350	46	2.3	46	81	0	140	33	21	13	32	1.92
39583115--39583213	28	3.5	27	81	10	101	28	11	14	46	1.78
39583115--39583213	29	3.5	28	83	8	112	28	11	14	46	1.78
39592239--39592485	40	6.2	40	79	12	235	23	22	28	25	1.99
39592238--39592462	80	2.8	79	84	4	283	23	22	28	25	1.99
39592239--39592465	119	1.9	120	84	2	296	22	22	28	25	1.99
39592279--39592485	79	2.6	79	83	5	258	23	22	28	26	1.99
39595290--39595337	20	2.4	20	100	0	96	18	10	18	52	1.74
39600522--39600759	40	6.0	40	75	14	208	23	22	27	26	1.99
39600519--39600742	80	2.8	80	83	4	267	23	22	27	25	2.00
39600559--39600765	79	2.6	78	81	8	238	24	22	27	26	2.00
39605851--39606207	46	7.6	47	75	9	263	25	20	29	24	1.99
39606035--39606215	95	1.9	98	83	6	244	24	20	29	24	1.99
39611962--39612061	43	2.3	43	84	0	128	35	8	14	43	1.74
39612441--39612490	20	2.6	20	81	6	59	36	6	2	56	1.36
39612774--39612826	27	2.0	27	88	0	79	22	32	15	30	1.94
39613901--39613952	22	2.4	22	90	0	77	23	32	30	13	1.93
39615797--39616032	50	4.9	50	77	8	209	22	26	20	30	1.98
39615839--39616018	95	1.9	94	85	7	249	22	27	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39621417--39621501	42	2.0	42	100	0	170	45	18	7	28	1.75
39623317--39623357	22	1.9	21	85	5	55	2	31	0	65	1.05
39623907--39623978	3	24.0	3	97	0	135	33	1	0	65	1.02
39625263--39625312	6	8.3	6	95	0	82	16	2	2	80	0.91
39632736--39632796	30	2.0	30	83	0	77	31	22	8	37	1.84
39635120--39635169	25	2.1	23	85	14	66	48	0	2	50	1.12
39637332--39637379	19	2.6	19	83	3	62	41	2	10	45	1.50
39641225--39641273	19	2.6	18	84	9	62	42	2	12	42	1.53
39645959--39646040	29	2.8	29	92	0	137	25	28	14	31	1.95
39653170--39653251	29	2.8	29	98	0	155	25	30	14	29	1.95
39655293--39655450	40	4.0	40	79	4	151	26	24	26	22	2.00
39655293--39655480	80	2.3	80	79	12	206	26	23	27	22	2.00
39663351--39663508	40	4.0	40	79	4	151	26	24	26	22	2.00
39663351--39663538	80	2.3	80	79	12	206	26	23	27	22	2.00
39667475--39667633	43	3.7	43	77	13	166	31	27	18	23	1.97
39671681--39671847	40	4.2	40	82	2	185	25	27	21	25	1.99
39671681--39671847	80	2.1	79	83	7	205	25	27	21	25	1.99
39672671--39672716	17	2.5	19	74	22	53	34	23	17	23	1.96
39673680--39673835	68	2.2	68	77	13	149	20	28	16	34	1.94
39684027--39684182	68	2.2	68	77	13	149	20	28	16	34	1.94
39695655--39695696	3	14.0	3	84	0	57	28	0	7	64	1.20
39695655--39695696	12	3.5	12	93	0	66	28	0	7	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39698012--39698059	25	1.9	25	86	0	69	33	25	16	25	1.96
39698097--39698154	9	6.0	9	75	15	53	34	5	22	37	1.76
39698103--39698161	20	3.0	20	94	0	100	37	8	20	33	1.83
39698212--39698378	24	7.0	24	91	3	248	29	22	21	26	1.99
39698212--39698379	71	2.3	71	89	4	248	29	22	21	26	1.99
39698570--39698664	31	3.1	31	96	0	172	40	15	21	23	1.91
39709137--39709305	28	5.9	27	83	6	149	27	30	12	29	1.93
39709150--39709305	29	5.5	28	86	2	177	27	30	12	28	1.93
39709137--39709305	86	2.0	85	85	3	232	27	30	12	29	1.93
39709379--39709415	19	2.0	19	89	5	58	16	40	18	24	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318