genome.fa.s2.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  206  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64766327--64766376	9	5.0	10	77	18	59	32	10	20	38	1.85
64766433--64766530	25	3.8	26	90	2	137	26	22	23	27	1.99
64771205--64771316	43	2.6	43	92	0	188	29	30	26	13	1.94
64771309--64771432	38	3.2	37	84	6	131	27	27	22	22	1.99
64775388--64775454	30	2.2	30	91	0	107	22	32	26	17	1.96
64780028--64780190	39	4.2	39	90	0	254	22	20	33	23	1.97
64780045--64780226	39	4.6	40	87	0	154	21	22	33	22	1.97
64784327--64784375	17	2.8	18	74	22	50	24	18	22	34	1.96
64785198--64785363	40	4.2	39	77	9	158	25	21	27	24	1.99
64793191--64793357	40	4.2	40	79	6	169	25	21	27	25	1.99
64798373--64798534	39	4.2	39	90	2	254	22	20	33	24	1.97
64798390--64798570	40	4.6	40	86	2	154	21	22	33	22	1.98
64804031--64804066	16	2.4	14	90	9	54	47	2	0	50	1.15
64808120--64808250	29	4.5	29	88	0	163	29	15	31	23	1.95
64816225--64816355	29	4.5	29	88	0	163	29	15	31	23	1.95
64820211--64820400	29	6.6	29	89	1	265	26	32	15	25	1.96
64823902--64824011	29	3.9	29	81	2	116	29	29	15	26	1.96
64824239--64824277	16	2.4	16	91	0	60	10	23	20	46	1.81
64824227--64824273	24	2.0	24	91	0	76	8	23	21	46	1.78
64828635--64828665	15	2.1	15	93	0	53	41	25	9	22	1.84
64832422--64832573	42	3.6	42	79	12	152	22	19	26	31	1.97
64837860--64837942	27	3.1	26	81	10	96	32	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64837924--64838339	27	15.4	27	81	5	360	40	18	8	31	1.81
64838586--64838709	41	3.0	41	84	0	158	22	20	29	27	1.99
64839113--64839165	22	2.4	22	83	0	61	13	20	22	43	1.86
64842291--64842422	29	4.6	29	90	0	174	28	15	31	25	1.95
64850108--64850268	29	5.6	29	87	0	178	27	15	32	24	1.95
64852745--64852813	28	2.5	28	88	6	97	27	14	27	30	1.95
64852745--64852823	28	2.9	27	85	9	81	27	15	25	31	1.95
64854338--64854425	27	3.3	27	83	10	126	39	19	22	18	1.92
64859583--64859737	42	3.7	43	77	16	155	23	16	27	32	1.96
64864082--64864158	6	12.5	6	75	15	68	50	12	18	18	1.77
64864092--64864158	25	2.7	25	92	0	107	49	13	19	17	1.80
64864376--64864427	27	2.0	26	84	3	68	34	21	26	17	1.95
64864664--64864951	54	5.3	54	87	0	389	40	6	21	30	1.79
64864664--64864949	81	3.5	81	84	1	367	41	6	21	30	1.79
64864664--64864955	27	10.8	27	82	2	327	41	6	21	30	1.79
64864664--64865006	54	6.4	54	84	2	208	39	7	21	32	1.81
64864962--64865111	54	2.8	54	79	7	153	28	9	22	39	1.85
64864972--64865111	27	5.2	27	78	10	126	29	9	22	39	1.85
64871660--64871719	27	2.2	27	90	0	93	38	20	10	31	1.85
64871673--64872086	27	15.3	27	85	6	482	27	21	9	41	1.84
64871673--64872086	81	5.1	81	86	5	543	27	21	9	41	1.84
64872091--64872232	27	5.3	27	91	0	176	35	17	18	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64872431--64872513	27	3.1	26	89	5	121	19	22	21	36	1.95
64872799--64872898	27	3.8	25	81	11	94	16	23	23	38	1.93
64873015--64873177	6	26.8	6	74	16	140	20	17	12	49	1.79
64873015--64873177	85	1.9	85	96	0	299	20	17	12	49	1.79
64873021--64873198	85	2.1	85	89	2	268	20	17	12	48	1.80
64879849--64879963	29	4.0	29	84	6	137	28	28	14	27	1.95
64880178--64880223	16	2.9	16	83	0	56	15	26	13	45	1.82
64885452--64885531	42	1.9	42	100	0	160	46	5	20	28	1.71
64892055--64892184	40	3.2	40	82	4	165	23	24	28	23	2.00
64895266--64895313	24	2.0	24	95	0	87	27	29	25	18	1.98
64899439--64899469	7	4.4	7	91	0	53	29	0	51	19	1.47
64903048--64903196	41	3.6	41	77	3	149	25	26	14	33	1.94
64903123--64903207	41	2.1	41	86	4	118	25	29	14	30	1.95
64908525--64908661	46	3.0	46	85	0	184	25	29	9	35	1.87
64908640--64908779	47	3.0	47	93	0	235	25	31	12	30	1.92
64908704--64908778	23	3.2	23	62	23	57	28	32	10	29	1.90
64913444--64913507	22	3.1	22	65	21	66	26	29	21	21	1.99
64913215--64913525	40	7.8	40	86	0	417	25	28	22	23	1.99
64914980--64915116	46	3.0	46	85	0	184	25	29	9	35	1.88
64915095--64915234	47	3.0	47	93	0	235	25	31	12	30	1.92
64915159--64915233	23	3.2	23	62	23	57	28	32	10	29	1.90
64919277--64919326	23	2.3	22	80	12	59	44	28	4	24	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64921595--64921703	28	3.9	28	82	1	121	33	17	27	21	1.95
64921592--64921703	56	2.0	55	84	1	143	34	17	26	20	1.95
64926059--64926190	29	4.6	29	83	1	149	25	32	16	25	1.96
64937661--64937858	71	2.8	70	92	3	294	33	17	28	20	1.95
64937727--64937844	41	3.1	41	60	28	98	32	17	28	21	1.96
64937695--64937858	71	2.3	71	100	0	328	35	17	28	18	1.94
64945224--64945421	71	2.8	70	92	3	294	33	17	28	20	1.95
64945290--64945407	41	3.1	41	60	28	98	32	17	28	21	1.96
64945258--64945421	71	2.3	71	100	0	328	35	17	28	18	1.94
64946763--64946853	47	1.9	47	100	0	182	26	17	13	42	1.86
64958653--64958748	28	3.4	28	80	8	106	25	30	16	28	1.97
64958649--64958763	56	2.0	57	83	5	144	26	27	14	30	1.95
64963141--64963205	28	2.3	29	86	2	87	24	33	16	24	1.96
64963166--64963224	28	2.1	29	83	3	75	30	28	13	27	1.94
64963288--64963321	18	1.9	18	88	5	52	20	38	23	17	1.93
64963439--64963497	16	3.7	16	81	0	73	10	20	18	50	1.75
64986169--64986290	46	2.6	47	84	5	147	26	22	14	36	1.93
64988545--64988762	122	1.8	120	83	6	287	32	11	22	33	1.89
64988758--64988887	40	3.2	40	81	2	163	23	23	28	24	2.00
64992625--64992725	28	3.5	28	86	6	114	29	26	13	29	1.94
65008650--65008816	40	4.2	40	82	2	185	25	27	21	25	1.99
65008650--65008816	80	2.1	79	83	7	205	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65009642--65009687	17	2.5	19	74	22	53	34	23	17	23	1.96
65012594--65012763	46	3.7	46	75	14	181	22	20	28	29	1.98
65015207--65015251	22	2.0	22	100	0	90	24	17	31	26	1.97
65015626--65015676	25	2.0	25	100	0	102	23	11	19	45	1.83
65026354--65026405	10	5.0	10	81	9	50	57	5	1	34	1.33
65028515--65028631	43	2.8	42	79	7	137	33	15	24	26	1.95
65028515--65028635	42	2.9	42	80	7	145	33	15	24	26	1.95
65031421--65031468	20	2.4	20	96	0	87	37	16	18	27	1.92
65034814--65034869	29	2.0	28	86	10	78	39	1	0	58	1.08
65038345--65038501	45	3.5	45	84	3	194	26	28	21	22	1.99
65047311--65047471	29	5.6	29	87	1	207	25	16	32	26	1.96
65056792--65056989	71	2.8	70	92	3	294	33	17	28	20	1.95
65056858--65056975	41	3.1	41	60	28	98	32	17	28	21	1.96
65056826--65056989	71	2.3	71	100	0	328	35	17	28	18	1.94
65067087--65067143	30	1.9	30	89	7	89	33	24	14	28	1.94
65068524--65068651	27	4.7	27	89	0	166	35	16	16	31	1.91
65068562--65068693	27	4.9	27	81	7	79	39	18	12	28	1.88
65072290--65072396	27	4.0	27	90	0	151	32	14	18	33	1.92
65072290--65072417	27	4.7	27	86	3	143	32	15	19	32	1.93
65072372--65072426	27	2.1	26	83	10	67	38	18	16	27	1.92
65077546--65077602	30	1.9	30	85	0	78	40	7	22	29	1.80
65081137--65081414	50	5.5	50	83	3	299	24	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65081178--65081414	101	2.4	100	84	2	305	24	17	27	31	1.97
65085334--65085468	56	2.4	56	87	0	198	32	22	14	30	1.93
65093595--65093663	28	2.5	28	95	2	122	18	10	27	43	1.82
65095076--65095113	20	1.9	20	88	0	58	52	10	2	34	1.50
65097797--65097953	43	3.7	42	70	10	113	23	15	26	33	1.95
65099973--65100007	12	2.9	12	95	0	61	40	17	8	34	1.80
65100125--65100159	18	1.9	18	100	0	70	34	17	8	40	1.80
65101066--65101250	67	2.9	64	80	8	187	24	30	16	28	1.97
65101984--65102044	30	2.0	30	87	0	86	29	24	4	40	1.76
65102746--65102777	13	2.6	12	90	9	55	37	25	3	34	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318