genome.fa.s2.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  130  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39711817--39711976	40	4.0	40	80	4	189	25	21	26	26	2.00
39711817--39711976	80	2.0	79	89	3	241	25	21	26	26	2.00
39726302--39726485	40	4.6	40	78	4	147	22	24	29	23	1.99
39731326--39731502	40	4.4	40	80	4	198	24	22	26	25	2.00
39731326--39731502	80	2.2	80	88	5	252	24	22	26	25	2.00
39741947--39741986	20	2.0	21	85	14	57	57	12	0	30	1.36
39743460--39743501	22	2.0	22	86	9	61	35	19	2	42	1.64
39745268--39745430	40	4.1	39	76	10	159	26	26	20	25	1.99
39748516--39748722	40	5.2	40	83	1	236	25	23	27	24	2.00
39748520--39748726	79	2.6	79	81	3	238	25	23	27	24	2.00
39755677--39755728	8	6.6	8	84	2	61	50	19	23	7	1.73
39755937--39756052	29	4.0	29	82	4	128	26	15	30	27	1.96
39755950--39756061	58	1.9	58	87	3	163	26	16	31	25	1.96
39758787--39758881	33	2.9	33	76	9	86	24	20	28	27	1.99
39761689--39761855	43	3.9	43	75	8	153	28	13	23	33	1.93
39767470--39767549	37	2.1	38	90	2	126	33	16	30	20	1.94
39770401--39770511	27	4.2	26	83	10	125	38	23	22	15	1.92
39771747--39771790	21	2.1	21	86	0	61	65	2	25	6	1.28
39778226--39778337	27	4.2	26	83	7	134	38	23	23	15	1.92
39779567--39779614	23	2.1	23	81	14	55	72	0	16	10	1.10
39781849--39781881	15	2.2	15	94	0	57	33	18	24	24	1.97
39781870--39782000	53	2.4	55	79	6	151	33	16	25	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39784889--39785051	39	4.2	39	93	0	272	24	32	20	22	1.98
39792866--39793020	39	3.9	39	93	0	265	24	32	20	23	1.98
39795168--39795199	5	6.6	5	92	7	57	18	0	0	81	0.70
39795168--39795198	9	3.3	9	91	8	53	19	0	0	80	0.71
39800602--39800656	22	2.4	22	82	14	67	30	0	18	50	1.47
39801167--39801205	18	2.1	19	90	4	62	69	7	10	12	1.37
39802935--39802975	19	2.2	19	100	0	82	58	9	14	17	1.62
39805744--39805770	13	2.1	13	100	0	54	37	11	22	29	1.89
39806999--39807084	43	2.0	43	95	0	154	19	16	31	32	1.94
39821621--39821816	46	4.2	46	80	10	211	29	20	29	20	1.98
39821618--39821836	94	2.3	94	82	7	214	29	21	28	21	1.98
39827447--39827485	20	1.9	20	84	5	51	35	2	10	51	1.50
39828941--39829367	216	2.0	216	91	0	703	33	9	18	37	1.84
39831895--39831933	19	2.1	19	100	0	78	28	10	25	35	1.89
39848326--39848396	35	2.0	35	94	0	124	25	19	32	22	1.98
39856293--39856463	93	1.8	93	96	0	315	28	29	21	21	1.98
39856285--39856460	46	3.8	46	78	15	209	29	28	21	20	1.98
39863825--39863952	46	2.8	46	92	1	213	30	29	20	19	1.97
39868225--39868281	26	2.1	29	87	9	84	56	15	10	17	1.67
39874571--39874632	29	2.1	29	82	5	72	35	1	12	50	1.51
39874823--39874880	22	2.6	22	83	5	64	41	5	3	50	1.42
39888680--39888755	40	1.9	40	88	0	116	19	14	31	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39888770--39888840	28	2.5	28	81	0	88	33	9	26	29	1.89
39897236--39897395	56	2.9	55	83	7	182	20	18	33	28	1.96
39912247--39912275	8	3.6	8	100	0	58	27	0	0	72	0.85
39913297--39913382	40	2.2	40	82	0	100	23	13	26	36	1.93
39913367--39913482	28	4.1	28	84	0	133	27	10	29	32	1.90
39913374--39913482	56	1.9	56	86	0	155	28	10	28	33	1.89
39913513--39913606	31	3.2	31	60	20	74	34	8	18	39	1.81
39913503--39913618	57	2.0	57	98	0	223	34	10	16	38	1.83
39914987--39915064	34	2.3	34	93	0	129	44	17	7	29	1.77
39915055--39915086	2	16.0	2	100	0	64	50	0	0	50	1.00
39921984--39922227	49	4.9	49	83	3	299	26	18	26	29	1.98
39927055--39927287	49	4.7	50	82	2	272	24	17	27	29	1.97
39933941--39934038	34	2.9	33	79	8	101	26	22	24	26	2.00
39937006--39937096	45	2.0	44	81	6	103	32	21	18	26	1.97
39938457--39938601	66	2.2	66	78	6	161	23	25	27	23	2.00
39944872--39944965	40	2.3	40	85	3	118	21	17	28	32	1.95
39944953--39945036	28	3.0	28	89	3	125	29	11	26	32	1.92
39953405--39953505	42	2.4	42	83	6	125	20	17	28	32	1.96
39957473--39957529	26	2.2	26	90	0	87	24	31	8	35	1.86
39958021--39958248	115	2.0	115	95	0	411	42	16	18	22	1.89
39961047--39961173	40	3.2	39	76	8	130	22	28	24	24	2.00
39961063--39961213	40	3.8	40	77	6	137	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39961063--39961212	80	1.9	80	83	8	198	22	26	24	26	2.00
39972988--39973226	47	5.1	47	92	1	374	32	12	29	25	1.92
39973013--39973135	22	5.3	22	66	24	74	31	12	30	26	1.92
39973109--39973184	23	3.2	25	62	24	63	28	13	34	23	1.92
39973001--39973378	47	7.9	47	90	4	285	34	10	27	27	1.90
39973105--39973378	47	5.7	48	87	8	298	35	9	26	28	1.88
39973185--39973378	50	4.0	50	93	4	308	37	8	24	29	1.85
39973185--39973378	98	2.0	98	90	6	313	37	8	24	29	1.85
39973528--39973634	36	3.0	36	91	4	171	23	19	29	27	1.98
39974899--39975303	40	10.1	40	90	0	621	25	21	27	25	2.00
39978622--39978731	26	4.2	26	97	0	184	33	5	24	36	1.79
39980489--39980774	136	2.1	137	96	0	529	24	18	25	31	1.97
39982607--39982845	47	5.1	47	93	1	356	32	11	29	26	1.92
39982632--39982707	22	3.3	22	67	22	66	31	13	30	25	1.93
39982681--39982803	23	5.2	25	62	25	77	30	13	32	24	1.93
39982748--39982824	23	3.3	23	67	22	70	31	10	29	28	1.90
39982804--39982999	50	4.0	50	93	2	317	37	8	23	30	1.84
39982619--39982945	141	2.3	140	81	8	358	33	11	27	27	1.90
39983149--39983257	37	2.9	37	94	0	182	22	20	30	26	1.98
39992846--39992958	47	2.4	47	83	4	138	30	11	12	46	1.77
40001131--40001218	27	3.3	27	85	1	115	29	14	15	39	1.88
40001197--40001404	54	3.9	54	81	2	220	30	9	20	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40001174--40001403	81	2.8	81	83	1	273	30	9	19	40	1.83
40001170--40001403	27	8.7	27	77	4	195	30	8	20	39	1.83
40001719--40001835	28	4.2	28	89	0	171	25	35	15	23	1.94
40004619--40004680	27	2.3	27	88	5	90	29	16	14	40	1.88
40004634--40004894	27	9.7	27	84	3	285	32	9	19	37	1.84
40004659--40004894	81	2.9	82	86	2	316	33	8	19	38	1.83
40005211--40005274	28	2.3	28	83	0	83	26	35	17	20	1.94
40010841--40011024	40	4.6	39	74	6	129	26	23	27	22	2.00
40010885--40011033	80	1.9	80	80	2	174	22	24	30	23	1.99
40020609--40020665	29	1.9	30	85	7	80	38	7	24	29	1.82
40021388--40021502	47	2.4	47	98	0	221	34	13	25	26	1.92
40021475--40021689	53	4.0	53	81	4	198	37	17	23	21	1.94
40021475--40021688	54	4.0	54	81	4	207	37	17	23	21	1.94
40021800--40021855	24	2.3	24	96	0	103	39	3	23	33	1.72
40023843--40023877	18	1.9	17	88	11	52	60	11	0	28	1.32
40026125--40026162	14	2.7	14	88	8	51	21	0	21	57	1.40
40026343--40026371	12	2.3	13	94	5	51	55	6	3	34	1.44
40026831--40026938	55	1.9	54	87	9	155	25	11	26	36	1.90
40034204--40034229	2	13.0	2	100	0	52	50	0	0	50	1.00
40041410--40041539	66	1.9	67	84	10	174	33	16	30	20	1.94
40050057--40050119	26	2.3	27	81	8	74	34	26	11	26	1.90
40054047--40054140	46	2.0	46	100	0	188	36	6	12	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40056864--40056961	34	2.9	34	93	0	160	26	24	21	27	1.99
40056952--40057009	18	3.2	18	71	9	55	37	13	20	27	1.91
40057268--40057317	23	2.2	23	82	13	59	44	18	12	26	1.84
40057352--40057441	27	3.3	27	82	3	110	18	20	20	41	1.91
40057396--40057478	27	3.1	27	86	6	98	27	14	20	37	1.92
40059831--40059855	12	2.1	12	100	0	50	56	8	8	28	1.57
40060150--40060325	46	3.8	46	78	15	209	21	21	28	29	1.98
40065218--40065296	30	2.6	31	76	13	83	13	22	2	60	1.45
40065276--40065300	12	2.1	12	100	0	50	8	16	0	76	1.02
40065369--40065425	5	11.0	5	75	20	55	3	17	1	77	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318