Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  300  of  318  ( 38146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94126922--94126973
19
2.7
19
77
16
63
36
1
0
61
1.07
94127855--94127880
11
2.4
11
100
0
52
73
0
11
15
1.11
94128470--94128504
2
17.5
2
93
0
61
51
2
0
45
1.16
94129304--94129381
3
26.0
3
100
0
156
66
0
0
33
0.92
94131525--94131555
14
2.2
14
94
0
53
12
9
0
77
0.99
94134967--94135005
21
1.9
20
84
5
51
43
10
10
35
1.73
94140040--94140072
16
2.1
16
88
11
50
57
6
9
27
1.53
94142930--94143104
46
3.8
46
76
14
189
20
21
29
29
1.98
94142927--94143096
92
1.8
93
91
1
279
20
21
29
28
1.98
94145627--94145844
46
4.8
45
77
6
181
25
21
30
22
1.98
94149257--94149432
46
3.8
46
78
12
198
20
21
29
28
1.98
94149254--94149424
93
1.8
93
92
0
288
20
21
29
28
1.98
94163563--94163595
16
2.1
16
88
11
50
57
6
9
27
1.53
94166346--94166383
19
2.1
19
90
5
60
63
5
5
26
1.37
94166630--94166683
25
2.3
23
81
15
58
55
3
3
37
1.35
94168630--94168659
13
2.4
13
94
5
53
60
6
0
33
1.23
94177545--94177586
18
2.5
18
81
11
54
33
0
4
61
1.17
94178366--94178414
18
2.7
18
84
12
64
57
2
0
40
1.10
94181248--94181310
30
2.2
27
78
13
65
39
6
12
41
1.69
94184540--94184590
20
2.4
22
80
9
61
37
0
0
62
0.95
94200222--94200272
21
2.5
20
81
6
59
49
1
0
49
1.12
94202773--94202816
2
22.0
2
100
0
88
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94207428--94207513
45
1.9
45
100
0
172
40
9
11
38
1.74
94210078--94210129
24
2.1
24
82
3
59
28
9
13
48
1.74
94211227--94211355
46
2.7
48
82
9
158
31
18
18
31
1.95
94212355--94212415
31
2.0
31
93
0
104
27
29
18
24
1.98
94212511--94212707
35
5.6
35
85
2
252
34
24
10
30
1.89
94212511--94212707
105
1.9
105
86
2
279
34
24
10
30
1.89
94216290--94216338
22
2.3
22
82
3
55
2
26
0
71
0.97
94216860--94216906
25
1.9
24
86
4
67
57
8
2
31
1.41
94220436--94220830
140
2.8
140
93
1
654
35
20
17
27
1.95
94220793--94221051
71
3.5
71
77
11
304
30
22
16
30
1.96
94220712--94221302
160
3.8
158
91
3
890
32
21
17
28
1.96
94221078--94221211
71
1.9
71
85
3
189
30
21
15
32
1.95
94233776--94233803
2
14.0
2
100
0
56
50
0
0
50
1.00
94233976--94234024
21
2.3
22
79
10
57
61
8
2
28
1.36
94234463--94234503
22
1.9
22
90
5
66
51
0
48
0
1.00
94245009--94245033
2
12.5
2
100
0
50
48
0
0
52
1.00
94246746--94246811
34
1.9
34
82
11
82
54
6
1
37
1.34
94248967--94249000
6
5.7
6
92
0
50
50
20
29
0
1.49
94252657--94252928
148
1.8
148
80
10
331
47
16
7
27
1.73
94254243--94254293
16
3.1
16
71
15
50
45
1
15
37
1.58
94254653--94254690
20
1.9
19
89
5
58
39
2
15
42
1.61
94259045--94259095
22
2.4
22
80
12
61
66
3
11
17
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94263368--94263424
29
1.9
30
82
3
71
15
24
35
24
1.95
94265272--94265341
12
5.8
12
77
15
54
72
5
2
18
1.17
94265284--94265341
19
3.1
19
87
7
75
74
3
3
18
1.11
94265283--94265340
25
2.4
25
85
8
75
72
3
3
20
1.14
94266524--94266822
35
8.6
35
90
1
341
31
25
15
28
1.96
94266524--94266822
105
2.9
105
86
1
386
31
25
15
28
1.96
94269185--94269231
21
2.2
21
100
0
94
31
19
36
12
1.89
94275004--94275049
6
7.5
6
92
4
74
82
0
2
15
0.76
94287142--94287196
28
2.0
28
85
0
74
30
23
14
30
1.94
94287234--94287303
21
3.3
21
84
4
70
20
15
38
25
1.92
94287738--94287769
13
2.5
13
94
0
55
21
9
25
43
1.82
94287748--94287803
26
2.2
26
83
0
67
33
3
25
37
1.73
94291435--94291468
17
1.9
18
88
5
52
64
11
2
20
1.39
94294441--94294794
177
2.0
177
90
0
564
24
11
21
42
1.85
94302268--94302548
33
8.4
32
69
12
120
32
16
24
27
1.96
94302267--94302628
100
3.6
99
82
6
426
32
16
24
26
1.96
94303823--94303861
17
2.3
17
95
0
69
30
15
28
25
1.96
94306028--94306060
5
6.6
5
100
0
66
60
0
0
39
0.97
94311877--94311996
48
2.5
48
98
0
231
37
19
0
42
1.57
94312579--94312628
5
10.0
5
100
0
100
60
0
0
40
0.97
94312911--94313096
93
2.0
93
100
0
372
23
18
15
43
1.87
94313396--94313448
24
2.2
24
86
0
70
52
9
5
32
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94314336--94314364
1
29.0
1
100
0
58
100
0
0
0
0.00
94316199--94316229
11
2.8
11
90
0
53
32
0
0
67
0.91
94316355--94316419
30
2.2
30
94
5
114
58
16
3
21
1.52
94316449--94316491
22
2.0
22
85
0
59
55
9
13
20
1.66
94318951--94318984
9
3.8
9
92
7
52
2
32
0
64
1.08
94333964--94333990
10
2.7
10
100
0
54
0
7
0
92
0.38
94335572--94335605
18
1.9
18
88
5
52
17
35
35
11
1.87
94335946--94336023
40
2.0
40
89
0
120
19
12
33
34
1.90
94338480--94338539
31
2.1
29
81
12
70
56
3
6
33
1.42
94338591--94338647
22
2.6
21
76
20
62
59
0
5
35
1.20
94339482--94339509
2
14.0
2
100
0
56
50
0
0
50
1.00
94344486--94344522
16
2.3
16
90
9
58
54
5
2
37
1.38
94354749--94354819
20
3.6
19
79
9
72
57
7
0
35
1.26
94355633--94355745
57
2.0
58
91
1
183
50
3
2
43
1.33
94356391--94356455
23
3.0
22
77
16
64
36
6
15
41
1.72
94356399--94356455
23
2.5
22
83
10
71
35
5
17
42
1.72
94358242--94358273
5
6.6
5
92
7
57
18
0
0
81
0.70
94358242--94358272
9
3.3
9
91
8
53
19
0
0
80
0.71
94361273--94361448
50
3.5
50
86
3
248
35
16
21
26
1.94
94361426--94361596
31
5.5
31
92
0
270
28
18
26
25
1.98
94361602--94361627
7
3.7
7
100
0
52
46
15
26
11
1.80
94361634--94361759
47
2.7
48
85
2
157
29
15
25
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94363238--94363274
5
7.6
5
93
6
67
18
0
0
81
0.70
94365062--94365098
2
18.5
2
100
0
74
0
0
48
51
1.00
94368129--94368159
15
2.1
15
93
0
53
19
16
0
64
1.29
94372333--94372368
5
7.0
5
93
6
63
38
0
0
61
0.96
94372401--94372461
30
2.0
30
81
9
70
59
6
34
0
1.24
94373926--94374060
39
3.4
39
76
8
123
23
20
27
28
1.99
94380098--94380133
5
7.0
5
93
6
63
38
0
0
61
0.96
94380165--94380225
30
2.0
30
81
9
70
59
6
34
0
1.24
94381687--94381821
39
3.4
39
76
8
123
23
20
27
28
1.99
94383918--94383958
21
2.0
21
85
0
55
46
4
2
46
1.37
94386730--94386972
125
1.9
125
95
0
441
37
16
17
28
1.91
94387073--94387122
13
4.2
12
80
14
52
68
0
4
28
1.08
94387431--94387471
14
2.9
15
89
10
61
63
0
0
36
0.95
94387843--94387878
18
2.0
18
94
0
63
16
0
58
25
1.38
94387898--94387954
29
2.0
29
86
6
80
19
3
45
31
1.67
94388311--94388336
7
3.7
7
100
0
52
26
0
0
73
0.84
94389667--94389809
33
4.3
33
69
8
101
33
15
23
27
1.95
94389786--94389858
33
2.2
33
80
4
85
30
19
27
23
1.98
94394461--94394547
21
4.0
23
79
10
83
37
24
21
16
1.93
94394918--94394975
15
3.8
15
84
11
82
51
13
0
34
1.42
94394921--94394980
30
2.1
28
93
6
102
55
13
0
31
1.39
94396248--94396300
5
10.4
5
97
2
97
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94398751--94398787
17
2.2
17
90
0
56
78
0
2
18
0.87
94400390--94400430
17
2.5
17
88
4
57
75
0
7
17
1.02
94400647--94400686
19
2.1
19
85
0
53
65
2
30
2
1.19
94400654--94400710
19
3.1
19
82
7
64
73
1
22
1
1.02
94408076--94408276
76
2.6
76
87
0
285
26
19
21
32
1.97
94411811--94411843
2
16.5
2
100
0
66
51
0
0
48
1.00
94412503--94412536
17
2.0
17
94
0
59
14
11
26
47
1.79
94417203--94417250
20
2.5
20
86
3
62
64
2
6
27
1.28
94421577--94421610
5
6.8
5
96
0
59
0
14
0
85
0.60
94429083--94429133
19
2.4
23
84
12
65
39
3
17
39
1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318