genome.fa.s2.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  105  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32051114--32051175	21	3.0	21	95	0	115	6	0	45	48	1.28
32051120--32051175	7	8.0	7	81	0	67	5	0	48	46	1.25
32051493--32051537	14	3.2	14	87	0	63	22	0	28	48	1.50
32051504--32051546	21	2.0	21	81	0	50	20	0	34	44	1.52
32053491--32053600	40	2.8	40	82	0	139	23	25	23	27	2.00
32055319--32055852	113	4.7	115	80	7	532	25	13	22	38	1.91
32055932--32056061	60	2.2	59	84	2	163	19	37	4	38	1.72
32058545--32058591	10	5.0	9	80	15	51	40	8	0	51	1.33
32058820--32058854	15	2.4	15	90	4	54	34	0	11	54	1.37
32058826--32058854	15	1.9	15	100	0	58	27	0	13	58	1.36
32058849--32058922	21	3.2	24	66	23	59	39	14	6	39	1.73
32059018--32059048	9	3.4	9	90	0	53	51	19	0	29	1.47
32059026--32059220	36	4.5	42	68	29	131	46	18	0	34	1.53
32059165--32059237	9	8.1	9	73	11	60	42	21	2	32	1.67
32059134--32059220	36	2.5	36	88	3	133	47	18	1	33	1.56
32064723--32064777	11	5.5	10	79	12	60	36	10	18	34	1.86
32071012--32071037	2	13.0	2	100	0	52	50	0	0	50	1.00
32075515--32075685	24	7.1	24	99	0	333	37	28	16	17	1.92
32087396--32087546	40	3.8	40	76	12	132	22	27	23	26	2.00
32091491--32091591	28	3.5	29	86	6	125	29	27	13	28	1.95
32097707--32097938	40	5.8	40	82	2	189	26	23	25	24	2.00
32097749--32097954	40	5.2	40	85	2	227	25	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32110939--32110990	3	16.3	3	76	11	50	28	0	3	67	1.08
32110948--32110983	12	2.8	13	91	8	56	25	0	5	69	1.10
32110962--32111012	21	2.4	21	90	6	77	23	3	5	66	1.30
32118049--32118205	43	3.6	44	77	15	141	31	24	19	24	1.98
32118580--32118604	8	3.1	8	100	0	50	24	24	0	52	1.48
32124841--32124945	55	1.9	55	86	0	147	38	21	29	10	1.87
32127844--32127879	12	2.8	13	91	8	56	25	0	5	69	1.10
32134646--32134677	14	2.4	13	90	10	55	62	12	6	18	1.50
32139177--32139355	48	3.8	48	69	12	140	31	24	17	27	1.97
32141775--32142029	55	4.8	54	76	12	228	35	16	25	22	1.95
32142221--32142251	16	1.9	16	93	0	53	41	0	22	35	1.54
32147719--32147767	25	2.0	25	83	0	62	36	0	18	44	1.50
32148163--32148248	43	2.0	43	90	0	136	48	2	23	25	1.62
32149654--32149679	12	2.2	12	100	0	52	23	0	7	69	1.14
32152684--32152749	30	2.2	31	81	8	82	16	25	39	18	1.91
32155139--32155167	2	14.5	2	100	0	58	48	0	0	51	1.00
32155536--32155593	16	3.4	16	75	11	62	31	1	0	67	1.01
32160979--32161034	28	2.1	25	83	9	67	42	1	1	53	1.21
32162269--32162682	135	3.0	138	89	3	615	40	6	5	47	1.53
32162665--32162700	18	2.0	18	100	0	72	50	5	0	44	1.25
32162529--32162837	157	2.0	153	90	2	483	42	7	5	44	1.55
32162903--32162935	17	1.9	17	93	0	57	54	6	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32166139--32166206	34	2.0	34	100	0	136	41	23	5	29	1.78
32170954--32171023	27	2.6	27	93	2	113	30	28	14	27	1.95
32178896--32178965	27	2.6	27	93	2	113	30	28	14	27	1.95
32183038--32183143	48	2.2	48	84	0	131	26	17	27	28	1.98
32183057--32183165	48	2.3	48	83	3	130	27	17	25	29	1.97
32183169--32183287	42	2.8	42	83	0	130	27	14	26	31	1.95
32186273--32187052	258	3.0	257	93	1	1305	28	13	17	39	1.88
32191416--32191540	48	2.6	48	89	0	187	24	18	28	29	1.98
32197099--32197194	39	2.5	39	91	0	147	26	17	26	30	1.97
32197099--32197246	39	3.8	39	85	1	145	25	20	27	26	1.99
32198375--32198413	20	1.9	21	89	5	62	46	5	20	28	1.72
32200523--32200707	40	4.6	40	89	2	248	26	24	20	28	1.99
32200495--32200713	80	2.7	80	82	8	268	26	24	21	28	1.99
32200476--32200707	40	5.8	40	84	8	228	25	24	21	28	1.99
32203186--32203413	48	4.9	47	71	11	171	28	22	21	27	1.99
32208362--32208491	40	3.3	39	76	8	136	23	27	23	24	2.00
32208378--32208529	40	3.8	40	78	6	148	22	26	23	27	1.99
32208378--32208527	80	1.9	80	83	8	198	22	26	24	27	1.99
32213979--32214147	71	2.4	71	98	0	329	18	27	17	36	1.93
32213979--32214181	71	2.9	70	91	3	259	20	28	16	34	1.94
32221162--32221325	71	2.3	71	100	0	328	18	28	17	35	1.94
32221162--32221359	71	2.8	70	91	3	258	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32226981--32227109	40	3.3	38	76	6	132	24	27	24	24	2.00
32226996--32227146	40	3.8	39	78	10	128	22	26	23	27	2.00
32226996--32227145	80	1.9	80	83	8	198	22	26	24	27	1.99
32230977--32231098	43	2.9	42	78	7	138	27	15	25	31	1.96
32233917--32234074	43	3.7	44	74	9	137	29	26	17	25	1.98
32239150--32239333	40	4.6	39	75	6	138	26	23	27	22	2.00
32239190--32239378	80	2.4	81	77	4	186	23	24	29	22	1.99
32246458--32246641	40	4.6	39	75	6	138	26	23	27	22	2.00
32246498--32246686	80	2.4	81	77	4	186	23	24	29	22	1.99
32248574--32248643	27	2.6	27	93	2	113	28	30	14	27	1.95
32250259--32250474	55	4.0	54	80	6	249	20	25	18	34	1.96
32250809--32250866	29	2.0	30	83	10	75	32	22	3	41	1.71
32259134--32259324	40	4.8	40	87	3	278	26	26	22	24	2.00
32263461--32263523	24	2.6	24	97	0	117	36	26	15	20	1.93
32264611--32264687	27	2.9	26	88	3	100	22	23	19	35	1.96
32271521--32271548	2	14.0	2	100	0	56	50	0	0	50	1.00
32275452--32275651	40	5.0	40	92	0	312	20	21	30	29	1.98
32275644--32275781	43	3.2	43	84	1	161	14	21	30	33	1.93
32275900--32275954	25	2.2	25	87	6	76	29	12	32	25	1.93
32275938--32276036	28	3.5	28	69	5	92	21	19	29	30	1.97
32275937--32276062	56	2.2	56	94	0	225	19	18	32	30	1.95
32275972--32276066	28	3.4	28	67	7	77	18	15	34	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32283262--32283347	27	3.2	26	83	4	91	23	22	18	36	1.95
32284913--32284985	27	2.7	27	97	0	137	27	16	16	39	1.90
32284913--32284998	27	3.2	27	85	6	120	29	15	16	39	1.89
32284913--32285036	54	2.3	54	81	2	133	28	17	16	37	1.92
32285436--32285553	40	3.0	39	77	7	114	27	19	21	32	1.97
32287944--32288049	44	2.5	43	86	7	144	22	15	27	34	1.94
32287982--32288085	42	2.4	43	80	3	111	27	14	24	33	1.94
32287931--32288103	43	4.0	43	77	7	154	24	15	26	33	1.95
32288920--32288961	21	2.0	21	85	4	57	38	2	21	38	1.67
32295498--32295654	43	3.7	42	76	11	149	23	17	27	31	1.97
32298659--32298720	31	2.0	31	96	0	115	30	22	8	38	1.83
32307879--32307925	22	2.1	22	88	0	67	46	10	4	38	1.58
32309918--32310004	43	2.0	45	86	4	124	52	1	24	21	1.53
32309923--32309987	15	4.4	16	69	25	61	53	1	26	18	1.53
32317369--32317405	18	2.1	18	100	0	74	32	21	0	45	1.52
32318079--32318109	16	1.9	16	93	0	53	35	22	0	41	1.54
32318076--32318115	20	2.0	20	85	0	53	37	22	0	40	1.54
32318188--32318232	23	1.9	24	86	4	65	22	26	11	40	1.87
32318348--32318555	55	3.8	53	79	7	222	22	25	16	35	1.95
32323827--32324096	40	6.8	40	85	4	321	25	22	27	24	2.00
32328794--32328894	28	3.5	29	86	6	125	29	27	13	28	1.95
32340118--32340247	40	3.2	40	82	2	172	24	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32340134--32340284	40	3.8	39	81	6	153	22	27	23	27	1.99
32340118--32340284	80	2.1	79	83	7	205	23	26	22	26	2.00
32343189--32343245	26	2.2	26	87	0	78	29	19	19	31	1.96
32347085--32347124	20	2.0	21	85	14	57	40	5	27	27	1.77
32351546--32351580	17	2.0	18	88	5	54	54	2	11	31	1.51
32354931--32354991	24	2.5	24	86	5	79	19	16	29	34	1.94
32362725--32362785	24	2.5	24	86	5	79	19	16	29	34	1.94
32364485--32364549	30	2.2	28	81	7	76	60	3	0	36	1.13
32366316--32366431	27	4.3	27	76	4	117	30	13	18	37	1.89
32366316--32366431	54	2.1	54	88	3	171	30	13	18	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318