genome.fa.s2.2.7.7.80.10.50.1000.252.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  252  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79441354--79441382	13	2.2	13	100	0	58	24	6	34	34	1.82
79445205--79445346	40	3.5	40	83	1	124	27	23	26	22	1.99
79445244--79445356	40	2.8	39	86	5	145	23	23	28	24	2.00
79452273--79452386	40	2.8	39	84	2	138	25	28	22	22	1.99
79455819--79455854	18	2.0	18	100	0	72	33	16	16	33	1.92
79455894--79455987	43	2.2	43	79	7	102	32	23	15	27	1.95
79461924--79461996	34	2.1	34	97	0	137	36	23	4	35	1.74
79471556--79471652	5	18.2	5	77	19	83	19	3	1	76	0.98
79471556--79471652	17	5.7	16	78	16	90	19	3	1	76	0.98
79471560--79471650	29	3.1	29	75	23	91	19	3	1	75	1.00
79471568--79471652	6	14.3	6	75	11	77	18	3	1	76	1.00
79483577--79483694	41	3.1	41	60	28	98	32	17	28	21	1.96
79483545--79483708	71	2.3	71	100	0	328	35	17	28	18	1.94
79490188--79490220	13	2.6	13	90	4	50	39	0	12	48	1.40
79495507--79495538	16	1.9	16	93	6	55	15	6	0	78	0.95
79495507--79495587	17	4.9	17	79	13	71	14	6	1	77	1.02
79495515--79495608	5	18.0	5	71	23	61	18	5	1	75	1.05
79495516--79495608	25	3.6	25	74	17	82	18	5	1	75	1.05
79495510--79495587	6	13.0	6	75	10	61	15	5	1	78	0.99
79498363--79498530	46	3.6	46	79	4	185	20	22	29	27	1.98
79498359--79498531	93	1.9	93	91	0	283	20	21	30	27	1.98
79499542--79499717	46	3.8	46	75	10	169	29	30	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79499550--79499721	93	1.8	93	88	0	263	28	30	20	19	1.97
79500604--79500635	13	2.5	13	100	0	64	25	0	6	68	1.12
79501322--79501367	24	1.9	24	100	0	92	41	17	26	15	1.88
79507673--79508061	47	8.3	47	92	0	643	26	30	8	33	1.87
79509830--79510011	39	4.6	39	87	2	240	23	30	22	24	1.99
79517845--79518026	39	4.6	39	87	2	240	23	30	22	24	1.99
79522487--79522710	40	5.6	40	89	0	340	25	28	22	24	1.99
79522770--79522842	38	1.9	38	88	0	110	24	24	19	31	1.98
79525270--79525658	47	8.3	47	91	0	634	26	30	8	33	1.87
79532377--79532419	21	2.0	23	81	9	54	25	27	13	32	1.94
79541792--79541830	15	2.6	15	88	8	53	25	5	5	64	1.35
79548110--79548143	17	1.9	18	88	5	52	38	5	5	50	1.51
79554995--79555202	67	3.2	65	79	10	183	23	28	17	30	1.97
79555016--79555247	68	3.5	64	79	8	175	25	29	15	28	1.96
79557162--79557263	28	3.5	29	81	6	109	28	27	14	29	1.95
79565091--79565192	28	3.5	29	81	6	109	28	27	14	29	1.95
79569132--79569158	2	13.5	2	100	0	54	48	0	0	51	1.00
79569385--79569474	40	2.3	40	76	7	103	23	27	26	22	1.99
79569347--79569490	40	3.7	40	71	10	100	26	26	24	22	2.00
79574890--79575051	39	4.2	39	91	2	254	23	20	31	24	1.98
79574890--79575081	39	4.9	39	88	1	242	23	21	31	23	1.98
79582665--79582826	39	4.2	39	88	2	236	23	19	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79582682--79582856	39	4.5	40	85	2	151	23	22	31	22	1.98
79590219--79590396	56	3.2	55	92	2	286	33	24	14	27	1.94
79591872--79591968	29	3.4	29	85	5	117	29	28	13	27	1.94
79592179--79592229	8	6.4	8	83	0	66	11	15	21	50	1.76
79592185--79592237	16	3.3	16	86	0	70	11	16	24	47	1.80
79592179--79592229	24	2.1	24	92	0	84	11	15	21	50	1.76
79592185--79592237	24	2.2	24	89	0	79	11	16	24	47	1.80
79593422--79593833	207	2.0	207	95	1	738	38	18	8	33	1.82
79598624--79598704	39	2.1	39	97	0	153	38	20	9	30	1.86
79599951--79600029	39	2.0	39	100	0	158	39	17	10	32	1.83
79600176--79600367	56	3.4	56	83	4	244	31	23	14	29	1.94
79603462--79603543	30	2.7	30	96	0	155	19	36	29	14	1.92
79604380--79604549	48	3.6	46	81	4	135	27	26	17	28	1.98
79604411--79604549	46	3.0	47	81	2	172	28	27	16	28	1.97
79608194--79608222	15	1.9	15	100	0	58	55	17	0	27	1.42
79622442--79622684	24	10.1	24	94	0	387	20	18	25	35	1.95
79636613--79636846	40	5.8	40	88	4	175	22	26	24	26	2.00
79636639--79636897	40	6.4	40	88	0	320	23	26	23	26	2.00
79644757--79645014	40	6.4	40	86	1	302	23	26	23	26	2.00
79644757--79645014	79	3.2	80	85	2	313	23	26	23	26	2.00
79644757--79645014	119	2.1	121	82	1	313	23	26	23	26	2.00
79651669--79651813	69	2.1	69	96	1	263	31	11	19	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79656380--79656561	39	4.6	39	86	2	231	23	30	21	24	1.99
79658738--79658774	16	2.3	17	86	9	51	56	0	37	5	1.22
79662442--79662733	97	3.0	97	98	0	575	27	26	20	25	1.99
79663537--79663596	11	5.5	11	82	5	59	38	46	0	15	1.45
79663535--79663589	22	2.5	22	81	0	74	41	43	0	14	1.45
79666726--79666750	9	2.8	9	100	0	50	24	12	0	64	1.27
79668590--79668663	29	2.6	29	91	4	114	25	31	16	27	1.96
79669309--79669345	8	4.6	8	96	0	65	40	8	0	51	1.32
79669304--79669349	2	23.0	2	81	0	56	41	6	2	50	1.40
79669304--79669345	16	2.6	16	88	0	66	40	7	2	50	1.43
79676184--79676216	17	1.9	17	88	11	50	48	6	6	39	1.53
79677087--79677133	24	2.0	24	82	0	58	8	6	27	57	1.53
79678584--79678619	13	2.9	12	84	8	54	44	38	0	16	1.48
79681125--79681344	40	5.5	40	86	3	264	25	26	22	25	2.00
79682053--79682084	2	16.0	2	100	0	64	50	0	0	50	1.00
79685413--79685488	22	3.3	21	75	20	71	55	0	2	42	1.14
79688266--79688311	20	2.3	20	84	0	56	41	6	13	39	1.70
79689383--79689413	16	1.9	16	93	0	53	25	3	38	32	1.72
79689957--79690005	20	2.5	20	100	0	98	26	14	24	34	1.94
79696680--79696713	16	2.1	17	94	5	61	8	0	5	85	0.75
79696680--79696714	15	2.2	16	90	5	54	11	0	5	82	0.82
79701321--79701374	28	2.0	28	88	3	83	44	7	0	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79708038--79708063	4	6.5	4	100	0	52	23	0	0	76	0.78
79713430--79713592	43	3.8	43	78	14	158	33	24	17	24	1.97
79713430--79713589	86	1.9	85	80	8	191	32	25	18	24	1.97
79715869--79715915	5	9.6	5	81	9	53	14	2	2	80	0.89
79715873--79715934	29	2.1	29	82	11	74	14	3	3	79	0.99
79722391--79722550	29	5.5	29	82	4	180	26	16	31	25	1.97
79730352--79730511	29	5.5	29	82	4	180	26	16	31	25	1.97
79738515--79738645	29	4.5	29	78	5	122	25	17	32	25	1.97
79742461--79742563	44	2.4	42	80	7	118	21	18	24	35	1.95
79752806--79752915	42	2.6	43	81	7	118	22	18	26	32	1.97
79752759--79752922	43	3.8	42	73	10	145	21	18	26	32	1.97
79755472--79755528	25	2.3	25	87	0	78	15	24	22	36	1.94
79755483--79755539	25	2.3	25	87	6	80	21	21	22	35	1.96
79757355--79757461	43	2.5	43	83	1	135	25	12	23	39	1.89
79759398--79759561	71	2.3	71	100	0	328	18	28	17	35	1.94
79759398--79759595	71	2.8	70	91	3	258	20	28	17	33	1.95
79766239--79766402	71	2.3	71	100	0	328	18	28	17	35	1.94
79766239--79766436	71	2.8	70	90	3	249	20	27	17	34	1.95
79773209--79773257	22	2.3	20	86	6	62	20	0	20	59	1.38
79773863--79773969	43	2.5	43	90	1	162	24	14	24	36	1.93
79773863--79773986	43	2.9	43	86	3	144	23	15	25	35	1.94
79782786--79782837	25	2.2	25	86	6	72	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79782906--79782979	27	2.8	27	78	17	75	32	5	0	62	1.18
79782904--79782979	13	5.6	14	77	13	72	32	5	0	61	1.18
79782898--79783001	10	9.6	11	69	18	60	32	4	0	62	1.16
79782908--79783009	25	3.8	27	78	16	90	33	3	0	61	1.21
79782908--79783002	15	7.1	14	75	17	62	32	4	0	63	1.14
79783450--79783660	116	1.8	112	82	6	262	30	6	12	50	1.65
79792594--79792633	21	2.0	20	85	5	53	32	20	5	42	1.73
79793238--79793262	12	2.1	12	100	0	50	60	16	8	16	1.58
79798795--79798824	10	3.0	10	95	0	51	53	10	0	36	1.35
79800187--79800308	37	3.3	37	96	0	217	20	33	20	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318