genome.fa.s2.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  131  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40065369--40065425	16	3.7	14	82	15	60	3	17	1	77	1.00
40065369--40065436	21	3.2	21	76	15	61	2	17	2	76	1.04
40068750--40068854	27	3.8	27	81	10	115	36	20	23	19	1.95
40068744--40068854	55	2.0	54	82	5	134	36	20	23	18	1.95
40073474--40073541	27	2.5	27	83	6	84	41	22	20	16	1.90
40073498--40073559	28	2.2	28	85	5	81	37	25	20	16	1.93
40074967--40075013	24	2.0	24	91	0	76	23	38	2	36	1.67
40075529--40075625	30	3.2	30	70	8	81	27	14	28	28	1.95
40088487--40088531	22	2.0	22	100	0	90	22	17	8	51	1.73
40090129--40090293	43	3.9	42	80	8	156	26	20	28	24	1.99
40090175--40090373	43	4.8	41	74	9	138	27	18	29	25	1.98
40093010--40093055	20	2.2	21	88	7	76	19	17	13	50	1.78
40101486--40101633	74	2.0	74	97	0	278	41	21	4	32	1.72
40102130--40102155	13	2.0	13	100	0	52	53	0	0	46	1.00
40110137--40110219	30	2.7	30	81	9	89	13	21	1	63	1.35
40110170--40110225	18	3.1	18	76	5	51	7	19	3	69	1.27
40110195--40110219	12	2.1	12	100	0	50	8	16	0	76	1.02
40110222--40110252	12	2.6	12	94	0	53	29	16	9	45	1.79
40110300--40110356	5	11.0	5	75	20	55	1	17	3	77	1.00
40110300--40110356	16	3.7	14	82	15	60	1	17	3	77	1.00
40110300--40110367	21	3.2	21	76	15	61	1	17	4	76	1.03
40111497--40111526	10	3.1	10	90	9	53	0	10	0	90	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40111498--40111523	9	2.9	9	100	0	52	0	7	0	92	0.39
40113000--40113097	30	3.3	30	73	0	88	29	17	25	27	1.97
40124331--40124376	10	4.7	10	84	10	60	6	4	6	82	0.94
40124331--40124368	11	3.6	11	93	6	62	7	5	7	78	1.07
40124731--40124778	14	3.4	14	85	0	60	43	6	31	18	1.75
40125759--40125798	19	2.1	19	86	9	55	22	12	35	30	1.91
40131377--40131502	40	3.2	39	80	6	139	21	25	24	28	1.99
40131316--40131502	80	2.3	80	78	12	204	22	27	24	25	2.00
40139451--40139576	40	3.2	39	80	6	139	21	25	24	28	1.99
40139390--40139576	80	2.3	80	78	12	204	22	27	24	25	2.00
40145232--40145384	40	3.8	40	78	9	143	22	23	28	25	2.00
40147779--40147871	25	3.7	25	83	0	114	50	11	16	21	1.76
40148800--40148916	27	4.4	26	84	7	92	24	23	17	34	1.96
40148825--40148926	27	3.8	27	90	1	152	25	23	15	35	1.94
40148919--40149074	81	1.9	81	81	5	190	31	8	21	37	1.85
40149025--40149181	54	2.9	53	86	2	233	31	9	20	38	1.85
40148972--40149181	27	7.8	27	83	1	197	30	9	21	38	1.85
40151503--40151709	27	7.7	27	89	2	274	40	9	22	28	1.84
40151681--40151873	54	3.6	54	78	3	201	31	8	22	37	1.85
40151715--40151865	27	5.6	27	76	12	118	29	9	21	39	1.85
40151672--40151865	108	1.8	107	81	1	244	30	8	22	38	1.84
40152493--40152727	55	4.3	55	86	3	334	22	24	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40152489--40152727	53	4.4	53	86	3	334	22	23	17	36	1.95
40152489--40152732	108	2.3	108	97	0	461	22	23	17	36	1.94
40152713--40152835	47	2.6	47	91	5	203	26	23	14	34	1.94
40159791--40160016	48	4.8	48	75	9	218	25	21	24	28	1.99
40161209--40161364	76	2.1	76	92	2	260	29	16	26	28	1.96
40170499--40170620	48	2.5	48	78	0	145	27	22	21	28	1.99
40175460--40175677	40	5.7	40	88	7	276	23	22	27	27	1.99
40175460--40175702	79	3.2	79	85	5	304	23	22	26	26	2.00
40180286--40180312	13	2.1	13	100	0	54	14	22	14	48	1.81
40182515--40182642	40	3.2	41	82	6	167	21	25	28	23	1.99
40187542--40187732	40	4.8	40	87	3	213	27	22	26	23	2.00
40187552--40187759	40	5.2	40	81	5	206	25	22	26	25	2.00
40189503--40189686	40	4.6	39	75	6	138	26	23	27	22	2.00
40189543--40189731	80	2.4	81	77	4	186	23	24	29	22	1.99
40194952--40195135	40	4.6	39	75	6	138	26	23	27	22	2.00
40194992--40195180	80	2.4	81	77	4	186	23	24	29	22	1.99
40203070--40203253	40	4.6	39	75	6	138	26	23	27	22	2.00
40203110--40203298	80	2.4	81	77	4	186	23	24	29	22	1.99
40204697--40204890	40	4.8	40	90	1	273	24	21	26	27	1.99
40206275--40206495	46	4.8	46	94	0	370	23	23	14	38	1.91
40206357--40206431	25	3.2	25	63	33	65	21	20	18	40	1.92
40213717--40213813	37	2.6	37	95	0	176	25	31	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40213848--40214566	48	15.0	48	91	0	1132	31	26	6	35	1.82
40215784--40215815	2	16.0	2	100	0	64	50	0	0	50	1.00
40217480--40217663	79	2.3	81	82	8	218	23	27	24	24	2.00
40217473--40217663	39	4.8	39	75	10	154	23	28	24	24	2.00
40236173--40236254	34	2.4	33	84	11	103	28	23	23	25	2.00
40238816--40238990	46	3.8	46	80	10	214	29	28	21	21	1.99
40238824--40238994	93	1.8	92	93	1	297	28	28	21	21	1.99
40241365--40241453	30	3.0	30	80	8	101	57	15	16	10	1.65
40241365--40241444	15	5.4	15	80	7	92	58	13	17	10	1.62
40241376--40241453	15	5.2	15	78	9	79	56	15	16	11	1.67
40244342--40244520	45	3.8	49	79	12	180	28	28	21	21	1.99
40244350--40244520	93	1.8	92	92	1	288	28	28	21	21	1.99
40256386--40256485	39	2.6	38	85	4	121	34	4	7	55	1.46
40258628--40258677	21	2.4	21	93	6	84	52	18	4	26	1.63
40262454--40262603	41	3.7	41	82	1	203	21	22	27	28	1.99
40265710--40265756	19	2.3	20	82	10	60	48	14	0	36	1.44
40269530--40269767	131	1.8	131	82	1	307	41	17	13	27	1.87
40270110--40270139	16	1.9	16	93	6	53	66	13	0	20	1.24
40270092--40270146	27	2.1	26	86	3	74	67	9	1	21	1.28
40270498--40270527	16	1.9	16	93	6	53	66	13	0	20	1.24
40269842--40270629	388	2.0	389	95	0	1427	54	9	9	26	1.64
40273069--40273142	35	2.1	35	97	0	139	36	24	12	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40273669--40273724	23	2.4	23	77	19	62	57	7	1	33	1.37
40273855--40273908	22	2.4	21	76	11	54	42	1	3	51	1.30
40282184--40282222	19	2.1	18	86	13	53	23	0	30	46	1.53
40284213--40284256	22	2.0	22	90	0	70	54	4	0	40	1.21
40286554--40286671	50	2.3	52	86	2	168	32	16	13	38	1.87
40297759--40298036	48	6.0	48	75	11	274	27	18	25	28	1.98
40300686--40300872	40	4.7	41	75	12	156	26	28	21	22	1.99
40301580--40301607	2	14.0	2	100	0	56	50	0	0	50	1.00
40305512--40305581	27	2.6	27	97	2	131	31	27	12	28	1.93
40310002--40310188	40	4.7	41	77	11	190	26	28	22	22	1.99
40313092--40313152	3	20.3	3	96	0	113	0	31	0	68	0.89
40314461--40314492	16	2.0	16	100	0	64	50	37	6	6	1.53
40315841--40315949	57	1.9	57	84	1	146	25	14	30	29	1.95
40315826--40315940	29	4.0	28	80	8	124	26	14	28	29	1.95
40317414--40317476	20	3.0	20	76	14	65	49	0	0	50	1.00
40318003--40318037	18	1.9	18	100	0	70	34	11	17	37	1.85
40319304--40319535	48	4.8	48	90	0	356	28	21	24	26	1.99
40322992--40323026	11	3.3	11	84	8	54	51	20	0	28	1.47
40322976--40323026	21	2.3	22	86	6	68	56	19	0	23	1.42
40322990--40323045	9	6.2	9	77	20	55	55	19	0	25	1.43
40326288--40326606	94	3.4	94	73	13	273	22	27	20	29	1.98
40326292--40326606	47	6.7	46	71	14	164	22	27	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40326289--40326598	141	2.2	137	78	8	302	22	27	20	29	1.99
40330820--40331006	40	4.7	40	91	0	266	18	22	28	29	1.97
40332381--40332561	48	3.8	48	84	2	238	27	18	25	28	1.98
40333923--40334128	53	3.8	53	80	2	232	19	25	16	37	1.93
40335480--40335588	24	4.6	23	85	7	137	33	23	17	24	1.96
40335480--40335588	48	2.3	48	91	3	175	33	23	17	24	1.96
40350545--40350712	40	4.2	40	79	1	149	23	26	24	26	2.00
40362290--40362403	27	4.2	27	87	4	151	37	19	24	18	1.94
40362292--40362404	54	2.1	54	88	6	167	38	18	24	18	1.93
40365286--40365398	44	2.5	43	80	9	111	29	20	25	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318