genome.fa.s2.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  172  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53433878--53433923	2	23.0	2	95	0	83	50	2	0	47	1.13
53439484--53439650	40	4.2	40	79	6	169	26	22	26	24	2.00
53447489--53447630	40	3.5	40	83	1	124	27	23	26	22	1.99
53447528--53447656	40	3.2	39	84	6	152	24	22	27	25	2.00
53452413--53452633	40	5.6	40	92	2	331	21	27	24	26	1.99
53453225--53453258	2	17.0	2	100	0	68	50	0	0	50	1.00
53460993--53461042	20	2.5	20	80	0	64	48	44	2	6	1.39
53462660--53462907	76	3.4	74	79	9	263	43	6	9	40	1.63
53465805--53465844	21	2.0	20	90	5	62	17	27	40	15	1.89
53474242--53474405	46	3.6	45	80	11	158	23	29	17	28	1.97
53474189--53474441	48	5.4	45	76	11	149	25	29	17	27	1.98
53478983--53479015	2	16.5	2	100	0	66	51	0	0	48	1.00
53482318--53482427	57	1.9	57	85	3	150	30	29	19	20	1.97
53482379--53482507	42	3.1	42	83	6	145	32	27	13	26	1.94
53487562--53487600	19	2.1	19	90	4	62	48	2	2	46	1.29
53488184--53488229	24	1.9	24	95	0	83	41	6	2	50	1.40
53488736--53488769	17	1.9	18	88	5	52	11	0	35	52	1.38
53488840--53488965	42	3.0	42	82	9	177	22	21	19	36	1.95
53488840--53488976	40	3.4	41	85	6	172	21	20	20	37	1.95
53496184--53496593	40	10.2	40	93	0	703	27	28	20	22	1.99
53502536--53502645	40	2.8	40	85	0	148	23	26	23	26	2.00
53507831--53508006	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53507828--53507999	93	1.8	93	96	0	317	20	21	29	27	1.98
53512614--53512723	40	2.8	40	85	0	148	23	26	23	26	2.00
53517846--53518296	40	11.4	40	92	1	721	28	28	19	23	1.98
53517846--53518296	158	2.8	159	93	1	764	28	28	19	23	1.98
53517846--53518296	198	2.3	198	94	0	778	28	28	19	23	1.98
53526212--53526581	40	9.2	40	93	0	641	28	28	20	22	1.99
53530126--53530170	20	2.2	20	88	0	63	35	13	2	48	1.54
53531232--53531279	25	2.0	23	84	12	60	60	0	16	22	1.36
53536694--53536742	7	6.9	7	83	2	62	16	2	40	40	1.60
53537177--53537501	165	2.0	164	91	1	535	36	7	16	38	1.77
53538306--53538406	49	2.0	50	98	1	195	32	11	29	25	1.92
53538925--53539095	44	3.7	46	75	13	133	26	18	30	24	1.98
53538880--53539095	92	2.3	94	79	12	234	26	18	30	24	1.98
53544151--53544185	17	2.1	17	100	0	70	22	14	22	40	1.90
53546044--53546210	46	3.6	46	80	8	173	26	19	30	23	1.98
53549383--53549443	30	2.0	30	93	0	104	29	24	6	39	1.80
53555927--53556045	44	2.8	42	82	8	132	27	14	26	31	1.95
53558970--53559050	37	2.2	37	93	0	135	20	22	32	24	1.98
53575284--53575317	17	1.9	18	94	5	61	26	0	0	73	0.83
53575336--53575374	21	1.9	21	89	5	62	23	28	20	28	1.99
53580204--53580375	46	3.8	44	78	14	188	20	19	29	30	1.97
53580195--53580366	93	1.8	93	92	2	292	20	20	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53594088--53594259	93	1.9	92	88	3	265	30	29	18	22	1.97
53602943--53603016	29	2.6	29	89	4	105	25	31	16	27	1.96
53603482--53603517	2	18.0	2	100	0	72	50	0	0	50	1.00
53604136--53604173	19	2.1	18	85	9	51	13	18	2	65	1.37
53606202--53606230	13	2.2	13	100	0	58	55	13	0	31	1.39
53615407--53615614	40	5.2	40	82	2	213	25	26	22	26	2.00
53623839--53623997	39	4.1	39	92	0	237	25	19	30	25	1.98
53628427--53628513	24	3.6	24	96	0	165	21	17	25	35	1.95
53628427--53628535	48	2.3	48	91	3	175	24	17	23	33	1.96
53628427--53628535	24	4.5	24	90	2	157	24	17	23	33	1.96
53636537--53636723	71	2.7	68	91	5	263	18	29	18	33	1.95
53636560--53636723	71	2.3	71	97	0	310	18	28	18	34	1.95
53636560--53636757	71	2.8	70	90	3	249	20	28	17	32	1.96
53638998--53639084	24	3.6	24	96	0	165	21	17	25	35	1.95
53638998--53639106	48	2.3	48	90	3	166	24	16	23	34	1.95
53646187--53646288	40	2.6	39	76	3	107	23	26	24	25	2.00
53646212--53646476	40	6.7	40	85	1	293	27	26	21	24	2.00
53650345--53650500	45	3.6	43	72	10	140	24	16	28	30	1.97
53657268--53657439	27	6.4	27	79	5	152	34	24	10	30	1.89
53657268--53657438	81	2.1	80	84	2	216	34	24	10	30	1.89
53665079--53665105	6	4.5	6	100	0	54	48	14	18	18	1.82
53666061--53666101	22	1.9	21	85	5	55	2	19	9	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53666082--53666122	17	2.4	17	88	8	57	7	17	0	75	1.02
53669473--53669749	39	7.0	39	90	4	437	24	28	25	21	1.99
53676583--53676758	46	3.8	45	77	10	185	21	19	28	29	1.98
53676579--53676750	93	1.8	93	91	0	281	21	20	29	28	1.98
53679110--53679150	22	1.9	21	85	5	55	2	19	9	68	1.29
53681460--53681497	2	19.0	2	100	0	76	50	0	0	50	1.00
53685588--53685649	7	8.9	7	81	0	52	33	32	8	25	1.85
53685588--53685649	21	3.0	21	82	0	70	33	32	8	25	1.85
53686451--53686495	24	1.9	24	95	4	83	44	4	8	42	1.56
53689877--53689927	25	2.0	25	100	0	102	39	3	21	35	1.72
53690434--53690470	18	2.1	18	94	0	65	45	8	5	40	1.56
53692112--53692136	13	1.9	13	100	0	50	20	32	0	48	1.50
53693200--53693226	3	9.0	3	100	0	54	33	0	0	66	0.92
53700402--53700451	6	8.3	6	100	0	100	50	34	0	16	1.45
53707109--53707376	47	5.7	45	76	12	220	22	27	21	29	1.99
53707109--53707376	94	2.8	94	83	8	348	22	27	21	29	1.99
53709813--53710001	80	2.4	80	85	1	245	25	23	27	23	2.00
53709813--53710020	40	5.2	40	82	2	220	25	23	27	24	2.00
53712558--53712614	16	3.3	16	70	25	53	26	1	29	42	1.66
53712559--53712615	17	3.2	17	72	18	62	26	1	28	43	1.65
53714772--53714882	48	2.4	44	76	13	107	27	18	29	24	1.98
53716269--53716370	28	3.5	29	81	6	109	28	27	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53724144--53724245	28	3.5	29	81	6	109	28	27	14	29	1.95
53725831--53725990	46	3.4	46	80	12	175	27	16	30	26	1.97
53728617--53728769	39	3.9	39	90	0	225	24	30	20	24	1.99
53728586--53728768	78	2.3	79	90	1	278	23	29	22	24	1.99
53730592--53730946	49	7.5	49	75	13	278	23	28	19	28	1.98
53730592--53730955	94	3.8	97	74	13	305	23	28	19	28	1.98
53730647--53730902	138	1.8	143	87	6	389	23	29	18	28	1.98
53733497--53733563	31	2.2	31	94	0	116	23	35	10	29	1.89
53741801--53741834	16	2.1	16	88	5	50	76	8	11	2	1.12
53748328--53748385	24	2.4	24	100	0	116	32	18	15	32	1.93
53748451--53748631	40	4.5	40	89	1	238	22	28	23	25	1.99
53748428--53748631	80	2.5	78	85	6	264	24	28	22	24	1.99
53751325--53751473	80	1.9	80	81	2	183	22	30	24	22	1.99
53751366--53751473	40	2.7	38	85	8	128	21	29	25	23	1.99
53764047--53764314	46	5.7	47	80	9	246	27	19	29	23	1.98
53772348--53772450	29	3.6	28	81	5	116	21	16	33	29	1.95
53774753--53774794	21	2.0	20	86	4	57	35	0	16	47	1.47
53779538--53779731	40	4.9	39	85	1	235	25	30	19	24	1.98
53780896--53781059	71	2.3	71	97	0	310	34	18	28	18	1.95
53787970--53788133	71	2.3	71	97	0	310	34	18	28	18	1.95
53789835--53790018	40	4.6	39	75	6	138	26	23	27	22	2.00
53789875--53790063	80	2.4	81	77	4	186	23	24	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53795111--53795247	43	3.2	43	73	10	129	32	25	16	24	1.96
53795100--53795255	85	1.8	85	84	5	217	33	25	16	24	1.96
53798406--53798445	21	1.9	21	89	0	62	37	5	10	47	1.59
53804089--53804113	2	12.5	2	100	0	50	52	0	0	48	1.00
53811640--53811769	40	3.2	40	81	2	163	23	23	28	24	2.00
53819619--53819748	40	3.2	40	81	2	163	23	23	28	24	2.00
53830193--53830240	22	2.0	23	84	15	62	31	4	12	52	1.58
53834847--53834879	8	4.2	8	88	7	50	3	21	0	75	0.93
53835964--53836004	20	2.2	19	86	8	57	31	9	19	39	1.84
53836046--53836115	25	2.8	25	93	0	113	27	25	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318