genome.fa.s2.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  119  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36468536--36468651	61	1.9	59	84	8	155	49	5	1	43	1.35
36475451--36475672	40	5.6	40	92	1	367	26	26	22	24	2.00
36481061--36481211	39	3.9	39	92	1	241	23	21	31	22	1.98
36481067--36481241	78	2.2	78	85	3	226	23	23	32	21	1.98
36488525--36488714	39	4.9	39	92	1	292	24	22	31	22	1.98
36488525--36488743	78	2.8	78	89	2	280	24	22	31	21	1.99
36493739--36493843	6	16.8	6	71	24	67	20	19	12	47	1.81
36493739--36493843	31	3.4	31	83	7	133	20	19	12	47	1.81
36493770--36493864	12	7.7	12	71	15	59	18	20	12	48	1.80
36497859--36497896	20	1.9	20	88	0	58	34	2	10	52	1.50
36499444--36499512	28	2.5	28	95	2	122	43	27	10	18	1.82
36505785--36505822	20	1.9	20	88	0	58	34	2	10	52	1.50
36507366--36507434	28	2.5	28	95	2	122	43	27	10	18	1.82
36512894--36513005	48	2.3	48	83	6	154	29	16	24	29	1.97
36525294--36525331	19	2.0	19	85	10	51	18	10	0	71	1.14
36525454--36525483	12	2.5	12	100	0	60	50	6	43	0	1.28
36529406--36529451	23	2.0	23	84	12	60	45	10	6	36	1.65
36529413--36529457	23	2.0	23	82	8	56	40	13	8	37	1.76
36532889--36533056	40	4.2	40	82	1	185	24	26	22	26	2.00
36540366--36540411	23	2.0	23	84	12	60	45	10	6	36	1.65
36540373--36540417	23	2.0	23	82	8	56	40	13	8	37	1.76
36545280--36545462	40	4.6	40	80	4	176	23	26	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36553349--36553531	40	4.6	40	83	3	181	23	26	22	27	1.99
36555238--36555403	40	4.2	40	78	8	162	25	22	27	24	2.00
36555238--36555387	79	1.9	79	84	5	205	26	22	27	24	2.00
36563189--36563355	40	4.2	40	78	6	160	25	22	27	24	2.00
36569102--36569237	56	2.4	57	86	3	204	33	24	12	29	1.92
36573874--36573909	13	2.8	13	100	0	72	16	36	33	13	1.89
36574948--36575111	42	3.9	42	76	7	134	31	26	18	23	1.97
36581642--36581710	28	2.5	28	95	2	122	18	10	27	43	1.82
36586460--36586519	30	2.0	30	100	0	120	26	26	10	36	1.88
36586679--36587044	49	7.7	46	78	11	305	24	28	19	27	1.99
36586685--36587044	95	3.8	94	81	8	376	24	28	19	27	1.99
36587760--36587784	12	2.1	12	100	0	50	60	16	8	16	1.58
36594462--36594819	47	7.7	47	73	15	255	24	28	19	27	1.98
36594509--36594817	141	2.2	141	88	4	446	23	28	20	27	1.99
36594929--36594979	15	3.7	15	75	20	65	45	21	0	33	1.52
36597899--36597953	21	2.5	22	88	2	76	18	27	30	23	1.97
36598917--36598941	12	2.1	12	100	0	50	40	0	8	52	1.31
36600966--36601013	25	1.9	25	82	0	60	33	22	14	29	1.94
36601124--36601192	24	2.8	25	86	4	95	27	23	21	27	1.99
36601123--36601205	24	3.4	24	81	6	78	30	21	21	26	1.99
36601413--36601527	31	3.7	31	89	1	169	33	16	26	24	1.96
36602175--36602249	6	12.2	6	76	16	64	20	21	12	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36602175--36602249	31	2.4	31	93	0	123	20	21	12	46	1.82
36611495--36611645	40	3.8	40	77	13	134	27	23	26	22	2.00
36611532--36611661	40	3.2	40	77	4	138	24	23	27	23	2.00
36618629--36618758	29	4.5	29	86	6	165	31	13	26	28	1.94
36624040--36624152	37	3.1	37	94	0	199	36	11	23	28	1.90
36626598--36626667	27	2.5	28	95	2	124	28	14	27	30	1.95
36626598--36626679	27	3.0	27	85	8	78	29	15	24	30	1.96
36634412--36634481	27	2.5	28	95	2	124	28	14	27	30	1.95
36634412--36634493	27	3.0	27	85	8	78	29	15	24	30	1.96
36650958--36651000	13	3.2	13	74	6	50	30	6	16	46	1.73
36658527--36658657	29	4.5	29	94	0	235	29	13	29	27	1.94
36658527--36658715	87	2.2	85	82	7	220	26	14	31	26	1.95
36658750--36658774	2	12.5	2	100	0	50	48	0	0	52	1.00
36663018--36663129	43	2.6	45	79	10	137	28	21	18	31	1.97
36672382--36672495	43	2.7	42	78	10	133	28	22	19	29	1.98
36673041--36673082	21	2.0	21	86	4	59	38	16	4	40	1.70
36678570--36678668	41	2.3	43	77	11	105	38	4	10	47	1.56
36685582--36685626	20	2.2	20	84	0	54	37	13	2	46	1.55
36690053--36690217	43	3.9	42	76	6	152	32	21	17	28	1.96
36694801--36694851	25	2.0	25	100	0	102	23	0	19	56	1.42
36695444--36695628	55	3.4	54	82	10	243	34	17	25	22	1.96
36695451--36695650	108	1.8	110	84	6	273	33	16	26	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36695891--36695921	16	1.9	16	93	0	53	41	0	22	35	1.54
36699726--36699892	40	4.2	40	78	6	160	25	22	27	24	2.00
36707717--36707883	40	4.2	40	78	6	160	25	22	27	24	2.00
36712779--36712804	2	13.0	2	100	0	52	50	0	0	50	1.00
36719277--36719404	37	3.4	37	97	1	238	25	32	18	23	1.97
36719444--36719642	48	4.2	48	96	1	364	31	28	6	33	1.83
36719444--36719642	95	2.1	96	96	0	364	31	28	6	33	1.83
36719588--36719847	57	4.5	57	73	13	196	31	28	8	31	1.87
36719658--36719693	18	2.0	18	88	0	54	33	22	11	33	1.89
36719555--36719800	123	2.0	123	99	0	483	32	26	8	32	1.87
36719757--36720045	49	5.9	49	93	3	492	29	27	8	33	1.87
36719757--36720047	96	3.0	96	93	3	492	29	27	8	33	1.87
36719757--36720045	145	2.0	146	93	2	490	29	27	8	33	1.87
36723822--36723965	40	3.6	40	95	0	245	25	27	21	25	1.99
36723820--36723990	80	2.2	80	86	6	240	26	28	20	24	1.99
36723962--36724082	40	3.0	40	79	4	127	29	28	18	23	1.98
36725989--36726079	37	2.4	37	96	1	164	25	32	18	23	1.97
36726119--36726318	48	4.2	48	96	0	364	31	28	6	33	1.83
36726334--36726369	18	2.0	18	88	0	54	33	22	11	33	1.89
36726231--36726476	123	2.0	123	99	0	483	32	26	8	32	1.87
36727497--36727721	40	5.7	40	91	2	312	22	23	27	27	1.99
36735724--36735945	40	5.6	40	92	1	356	24	21	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36735720--36735973	120	2.1	120	86	2	359	24	21	26	27	1.99
36737788--36737834	10	4.7	10	84	12	53	82	0	17	0	0.66
36737794--36737838	5	9.6	5	81	13	60	84	0	15	0	0.62
36739847--36739895	15	3.3	15	76	21	57	77	2	18	2	0.96
36739860--36739918	23	2.6	23	84	10	77	76	0	20	3	0.93
36739848--36739918	12	6.5	11	78	15	60	76	1	19	2	0.99
36743482--36743531	26	1.9	26	95	0	91	26	18	14	42	1.87
36743497--36743617	59	2.1	59	98	0	233	30	8	17	43	1.78
36757199--36757297	28	3.5	29	83	6	114	30	27	15	27	1.96
36765210--36765308	28	3.5	29	83	6	114	30	27	15	27	1.96
36769420--36769466	22	2.2	21	84	3	58	36	21	8	34	1.84
36769437--36769517	19	4.2	19	90	3	117	35	16	11	37	1.84
36769920--36770424	87	5.8	87	65	16	256	29	19	18	32	1.96
36769968--36770537	175	3.3	175	91	0	881	28	20	18	32	1.96
36770502--36770816	44	7.1	43	73	9	208	27	23	16	31	1.96
36770498--36770816	132	2.4	132	90	1	476	27	23	16	31	1.96
36773002--36773029	6	4.7	6	100	0	56	14	0	0	85	0.59
36778280--36778405	19	6.5	19	90	8	175	36	15	10	37	1.82
36778337--36778393	17	3.5	15	88	11	53	35	15	10	38	1.82
36778294--36778409	36	3.1	37	90	9	173	36	15	9	38	1.80
36791456--36791565	55	2.0	56	85	8	154	30	26	17	25	1.97
36792057--36792121	32	2.0	32	100	0	130	26	15	21	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36796747--36796828	41	2.0	41	87	0	119	30	26	10	31	1.91
36797289--36797345	27	2.2	26	83	3	69	24	8	22	43	1.81
36802335--36802372	18	2.3	16	83	16	51	81	0	7	10	0.87
36802336--36802381	8	5.9	8	85	12	60	80	0	6	13	0.89
36804523--36804573	2	27.0	2	88	11	81	47	0	0	52	1.00
36804466--36804558	47	2.0	43	86	12	123	39	1	2	56	1.18
36805614--36805638	12	2.1	12	100	0	50	16	24	20	40	1.91
36805695--36805784	46	1.9	47	86	2	128	16	21	25	36	1.94
36805904--36805974	36	2.0	36	83	5	90	30	8	12	47	1.71
36805918--36806056	18	7.2	18	69	16	82	33	10	15	41	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318