genome.fa.s2.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 99090824 
Parameters: 2 7 7 80 10 50 1000
Length:  99090824

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   

This is table  158  of  318  ( 38146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48619472--48619613	53	2.6	53	82	2	158	37	17	23	21	1.94
48627119--48627146	14	2.0	14	100	0	56	35	14	7	42	1.73
48646445--48646656	47	4.5	46	74	10	162	28	20	28	22	1.99
48646443--48646656	94	2.3	93	81	3	250	28	21	28	22	1.99
48649534--48649612	25	3.3	25	66	16	67	31	30	5	32	1.79
48649484--48650021	47	11.3	47	92	2	833	28	29	9	32	1.88
48649894--48650016	22	5.3	22	62	18	61	26	30	10	32	1.90
48657544--48657710	40	4.2	40	81	2	176	24	27	22	25	2.00
48657560--48657710	80	1.9	79	83	6	198	23	27	22	25	2.00
48667573--48667739	40	4.2	40	81	2	176	24	27	22	25	2.00
48667589--48667739	80	1.9	79	83	6	198	23	27	22	25	2.00
48681619--48681794	46	3.8	44	80	10	192	21	20	28	28	1.98
48681615--48681786	93	1.8	93	92	0	290	21	20	29	27	1.98
48684736--48684804	15	4.6	15	83	0	84	11	17	13	57	1.64
48684727--48684814	30	3.0	30	81	8	99	10	17	15	56	1.66
48687732--48687773	22	2.0	22	85	4	59	16	45	19	19	1.86
48691907--48691954	23	2.1	23	85	14	64	41	20	14	22	1.89
48691989--48692051	27	2.3	28	84	13	87	28	14	11	46	1.78
48694475--48694620	40	3.6	40	78	8	127	28	23	25	22	1.99
48696899--48696934	10	3.6	10	100	0	72	41	22	0	36	1.54
48701690--48701728	16	2.4	17	95	4	71	48	38	5	7	1.54
48703309--48703529	40	5.6	39	81	8	232	25	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48711403--48711624	39	5.7	40	81	6	242	25	27	21	25	1.99
48711405--48711624	78	2.8	80	84	9	283	25	27	21	25	1.99
48716818--48716949	28	4.7	27	74	10	88	21	15	31	31	1.94
48716818--48716949	56	2.3	56	81	8	144	21	15	31	31	1.94
48723546--48723721	46	3.8	46	79	12	216	20	21	29	28	1.98
48723543--48723714	93	1.8	93	96	0	317	20	21	29	27	1.98
48731125--48731295	46	3.8	46	72	20	171	20	20	29	29	1.98
48731122--48731288	88	1.8	89	89	6	264	20	20	29	28	1.98
48735549--48735650	29	3.5	29	82	2	116	21	16	33	28	1.95
48741436--48741658	79	2.8	80	86	5	301	25	27	21	25	2.00
48741434--48741658	119	1.9	120	84	6	305	25	27	21	25	1.99
48741416--48741658	40	6.1	40	80	6	271	25	27	21	25	2.00
48744655--48744738	29	2.9	29	76	3	80	32	13	29	25	1.93
48746856--48747022	40	4.2	40	81	2	176	24	27	22	25	2.00
48746872--48747022	80	1.9	79	83	6	198	23	27	22	25	2.00
48753729--48753760	16	2.0	16	93	0	55	50	28	6	15	1.68
48757156--48757229	29	2.6	29	95	0	139	27	31	14	27	1.95
48757097--48757229	58	2.3	58	80	2	133	24	33	17	24	1.96
48764981--48765112	29	4.6	29	82	1	140	25	32	17	25	1.97
48770478--48770655	40	4.5	39	80	7	171	28	22	26	22	1.99
48770518--48770618	39	2.5	40	87	3	141	28	22	26	21	1.99
48770478--48770655	79	2.2	81	78	8	186	28	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48772193--48772379	71	2.7	68	93	5	281	18	28	18	34	1.95
48772216--48772379	71	2.3	71	100	0	328	18	28	17	35	1.94
48772216--48772413	71	2.8	70	92	3	276	20	28	17	33	1.95
48775879--48776045	40	4.2	40	82	2	185	24	26	22	26	2.00
48783865--48784031	40	4.2	40	82	2	185	24	26	22	26	2.00
48792837--48792966	40	3.3	39	76	8	136	23	27	23	24	2.00
48792853--48793004	40	3.8	40	78	6	148	22	26	23	27	1.99
48792853--48793002	80	1.9	80	83	8	198	22	26	24	27	1.99
48807224--48807258	18	1.9	18	94	0	61	54	2	2	40	1.30
48811885--48811992	38	2.8	38	83	8	139	22	22	26	28	1.99
48811985--48812182	43	4.6	43	92	0	315	12	24	31	31	1.92
48816737--48816789	27	2.0	27	84	0	70	33	16	16	32	1.92
48817063--48817142	34	2.4	34	83	8	92	31	23	20	25	1.98
48829745--48829916	95	1.8	95	84	0	236	28	16	26	27	1.97
48829694--48829950	50	5.4	45	75	11	151	28	16	27	28	1.97
48839968--48840156	29	6.5	29	85	3	238	26	16	30	25	1.97
48842473--48842746	49	5.5	49	88	1	395	25	17	27	29	1.98
48842468--48842765	150	2.0	149	91	0	479	25	18	26	28	1.98
48845479--48845517	15	2.5	15	91	4	60	15	12	15	56	1.68
48847563--48847618	29	1.9	29	85	7	78	37	8	25	28	1.86
48848266--48848447	49	3.7	49	85	2	265	26	19	25	28	1.99
48848268--48848466	100	2.0	100	93	0	344	27	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48850996--48851101	53	2.0	53	100	0	212	33	33	9	22	1.86
48851005--48851091	29	3.2	29	60	21	69	32	34	10	22	1.88
48851076--48851184	29	3.8	29	80	10	116	26	30	16	26	1.97
48851076--48851184	58	1.9	57	84	1	146	26	30	16	26	1.97
48853324--48853389	32	2.1	32	100	0	132	34	36	9	19	1.84
48855569--48855683	29	4.0	29	82	6	119	30	25	13	30	1.94
48860162--48860278	41	2.8	42	77	11	132	30	23	14	31	1.94
48867191--48867370	40	4.5	40	76	7	159	24	26	23	25	2.00
48874292--48874455	71	2.3	71	100	0	328	18	28	17	35	1.94
48874292--48874489	71	2.8	70	91	3	258	20	28	17	33	1.95
48877599--48877764	40	4.2	40	78	8	162	25	22	27	24	2.00
48877599--48877748	79	1.9	79	84	5	205	26	22	27	24	2.00
48885614--48885720	40	2.6	42	83	5	139	25	24	28	21	1.99
48885614--48885727	41	2.8	39	84	6	138	23	23	28	23	1.99
48893019--48893182	71	2.3	71	100	0	328	18	28	17	35	1.94
48893019--48893216	71	2.8	70	91	3	258	20	28	17	33	1.95
48896737--48896912	40	4.4	40	77	5	158	23	24	25	26	2.00
48912211--48912313	28	3.7	28	85	5	136	19	24	19	36	1.94
48916948--48917126	40	4.4	40	85	2	216	26	24	26	22	2.00
48916982--48917152	80	2.1	80	80	2	182	28	24	25	21	1.99
48918164--48918535	179	2.1	180	93	0	629	35	15	20	27	1.94
48925068--48925240	40	4.3	40	84	2	195	27	22	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48925096--48925266	80	2.1	80	80	2	182	28	24	25	21	1.99
48927596--48927711	28	4.2	28	86	2	155	17	25	21	36	1.95
48931747--48931849	28	3.7	28	86	0	134	20	25	19	34	1.96
48934436--48934648	40	5.4	40	82	5	254	24	27	23	24	2.00
48943406--48943478	29	2.5	29	100	0	146	31	15	28	24	1.95
48943465--48943537	29	2.5	29	84	0	92	28	17	26	27	1.98
48951349--48951450	29	3.5	29	100	0	204	32	14	28	24	1.95
48951437--48951509	29	2.5	29	84	0	92	28	17	26	27	1.98
48951350--48951509	58	2.8	58	85	9	195	31	15	26	25	1.96
48961211--48961340	40	3.2	40	81	2	163	23	23	28	24	2.00
48969125--48969290	40	4.2	40	77	8	162	26	23	26	23	2.00
48974074--48974143	27	2.5	28	88	2	106	31	25	14	28	1.95
48977373--48977425	20	2.8	20	81	13	67	77	1	15	5	1.04
48978584--48978666	29	2.9	29	98	0	157	31	14	27	26	1.95
48978580--48978707	58	2.2	58	81	4	152	30	15	29	24	1.96
48986662--48986749	42	2.1	42	100	0	176	21	19	11	47	1.80
48989284--48989310	14	1.9	14	100	0	54	66	0	0	33	0.92
48992278--48992469	40	4.8	39	78	6	138	24	23	28	23	2.00
48992278--48992462	79	2.3	82	82	9	222	24	23	27	24	2.00
48992331--48992470	40	3.5	40	83	6	144	25	24	27	22	2.00
48992278--48992495	79	2.7	78	77	8	174	24	22	27	24	2.00
48996951--48997088	37	3.7	37	98	0	258	23	32	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48997251--48997751	48	10.4	48	94	0	831	30	26	7	35	1.84
49001605--49001875	40	6.8	40	90	0	398	27	31	20	19	1.97
49003169--49003271	37	2.8	37	93	0	170	25	31	19	24	1.98
49003419--49003740	48	6.7	48	95	0	563	30	26	7	35	1.85
49011290--49011400	56	2.0	56	98	0	213	27	12	25	35	1.92
49019627--49019843	40	5.4	40	80	3	215	27	23	25	23	2.00
49019626--49019843	78	2.7	80	78	4	226	27	23	25	23	2.00
49023959--49024136	40	4.4	40	82	3	198	23	26	23	26	2.00
49024843--49024874	2	16.0	2	100	0	64	50	0	0	50	1.00
49033069--49033247	40	4.4	40	85	2	216	22	26	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318